Wall clock time and date at job start Wed Apr 1 2020 04:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47440 * 2 1 4 4 H 1.09000 * 109.46789 * 55.00267 * 3 2 1 5 5 C 1.52995 * 109.47109 * 295.00139 * 3 2 1 6 6 N 1.46502 * 109.47412 * 174.99968 * 3 2 1 7 7 N 1.28443 * 125.18918 * 66.53916 * 6 3 2 8 8 C 1.30866 * 110.92422 * 180.02562 * 7 6 3 9 9 C 1.39668 * 107.86171 * 359.77184 * 8 7 6 10 10 C 1.36598 * 125.18960 * 246.56975 * 6 3 2 11 11 C 1.47165 * 126.88269 * 359.93690 * 10 6 3 12 12 O 1.21622 * 120.00129 * 10.35115 * 11 10 6 13 13 N 1.34781 * 119.99850 * 190.34983 * 11 10 6 14 14 C 1.48264 * 127.73277 * 0.94355 * 13 11 10 15 15 C 1.54709 * 104.66789 * 141.18974 * 14 13 11 16 16 C 1.53043 * 104.47250 * 23.66293 * 15 14 13 17 17 C 1.53886 * 111.36978 * 121.01891 * 16 15 14 18 18 C 1.55145 * 101.45324 * 154.99521 * 17 16 15 19 19 N 1.47535 * 105.06428 * 324.20075 * 18 17 16 20 20 C 1.36936 * 125.67202 * 203.97380 * 19 18 17 21 21 H 1.08006 * 120.00215 * 146.79277 * 20 19 18 22 22 C 1.38813 * 120.00105 * 326.79066 * 20 19 18 23 23 N 1.31616 * 120.00042 * 163.48979 * 22 20 19 24 24 Si 1.86806 * 119.99751 * 343.49723 * 22 20 19 25 25 H 1.48500 * 109.47114 * 88.42489 * 24 22 20 26 26 H 1.48498 * 109.47040 * 208.42188 * 24 22 20 27 27 H 1.48492 * 109.46967 * 328.42584 * 24 22 20 28 28 C 1.47603 * 108.52321 * 23.93829 * 19 18 17 29 29 C 1.48445 * 127.73538 * 180.93881 * 13 11 10 30 30 H 1.08999 * 109.47151 * 300.00124 * 1 2 3 31 31 H 1.09000 * 109.46734 * 59.99828 * 1 2 3 32 32 H 1.08998 * 109.47553 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47422 * 240.00207 * 2 1 3 34 34 H 1.09002 * 109.47397 * 119.99834 * 2 1 3 35 35 H 1.09005 * 109.47052 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47400 * 299.99755 * 5 3 2 37 37 H 1.09001 * 109.47227 * 59.99531 * 5 3 2 38 38 H 1.08002 * 126.06433 * 180.02562 * 8 7 6 39 39 H 1.08007 * 127.32000 * 180.23837 * 9 8 7 40 40 H 1.08997 * 110.40203 * 22.38917 * 14 13 11 41 41 H 1.09007 * 110.49095 * 260.03543 * 14 13 11 42 42 H 1.09001 * 110.43337 * 264.91558 * 15 14 13 43 43 H 1.08996 * 110.54044 * 142.46023 * 15 14 13 44 44 H 1.08996 * 111.03393 * 36.94399 * 17 16 15 45 45 H 1.09008 * 111.05856 * 273.04546 * 17 16 15 46 46 H 1.08994 * 110.33913 * 83.12804 * 18 17 16 47 47 H 1.08997 * 110.33829 * 205.27358 * 18 17 16 48 48 H 0.97000 * 119.99757 * 180.02562 * 23 22 20 49 49 H 1.08995 * 109.94772 * 238.66119 * 28 19 18 50 50 H 1.09000 * 109.96522 * 117.40846 * 28 19 18 51 51 H 1.09006 * 110.46229 * 99.70310 * 29 13 11 52 52 H 1.08997 * 110.46527 * 337.11634 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 7 3.5001 1.4442 0.1204 7 7 4.3164 0.9994 -0.7659 8 6 5.5563 1.1373 -0.3705 9 6 5.5394 1.7338 0.8923 10 6 4.2010 1.9186 1.1926 11 6 3.6447 2.5131 2.4185 12 8 2.4497 2.4517 2.6360 13 7 4.4595 3.1257 3.3002 14 6 5.9265 3.3157 3.1995 15 6 6.1767 4.7368 3.7572 16 6 4.9746 5.0088 4.6645 17 6 5.4168 5.2944 6.1106 18 6 4.2273 6.1414 6.6348 19 7 3.7980 6.9548 5.4813 20 6 3.1253 8.1456 5.5500 21 1 3.3018 8.9093 4.8070 22 6 2.2164 8.3711 6.5747 23 7 1.8157 9.5962 6.8411 24 14 1.5621 6.9359 7.5755 25 1 2.4672 6.6804 8.7247 26 1 0.2035 7.2618 8.0785 27 1 1.4957 5.7247 6.7190 28 6 4.2164 6.2697 4.2427 29 6 4.0893 3.7615 4.5894 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9983 3.1544 -1.3071 36 1 2.0699 1.5875 -2.1491 37 1 0.5490 2.1252 -1.3969 38 1 6.4364 0.8458 -0.9244 39 1 6.3899 1.9935 1.5052 40 1 6.2472 3.2537 2.1596 41 1 6.4497 2.5733 3.8024 42 1 6.2129 5.4633 2.9454 43 1 7.1019 4.7643 4.3329 44 1 6.3438 5.8673 6.1303 45 1 5.5188 4.3697 6.6788 46 1 3.4159 5.4923 6.9636 47 1 4.5519 6.7849 7.4525 48 1 1.1809 9.7538 7.5574 49 1 4.8697 6.9197 3.6606 50 1 3.3405 5.9977 3.6537 51 1 4.3049 3.0905 5.4210 52 1 3.0358 4.0414 4.5877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041331698.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:03 Heat of formation + Delta-G solvation = 61.565067 kcal Electronic energy + Delta-G solvation = -31818.268876 eV Core-core repulsion = 27819.810420 eV Total energy + Delta-G solvation = -3998.458456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.62545 -41.43606 -39.69988 -37.73353 -37.19231 -34.70681 -33.04799 -32.54668 -31.78843 -30.86733 -30.03330 -29.70967 -27.78166 -26.25722 -25.74710 -24.04749 -23.24825 -23.02727 -22.64655 -21.72115 -20.38196 -20.02273 -18.96745 -18.20724 -17.64507 -17.23236 -17.18090 -16.64241 -16.47846 -16.21090 -16.16014 -15.52446 -15.27112 -15.14477 -15.08904 -14.78111 -14.66643 -14.28042 -14.05874 -13.74915 -13.69697 -13.49731 -13.27658 -13.22626 -13.01022 -12.91566 -12.83708 -12.76838 -12.61708 -12.36574 -12.25427 -12.15407 -11.90596 -11.87854 -11.73492 -11.60790 -11.45292 -11.18265 -11.08537 -10.80919 -10.31187 -9.99908 -9.81267 -8.87685 -8.26411 -5.64312 0.19335 1.21566 1.23917 1.33767 1.43764 1.67205 1.93184 2.08250 2.34919 3.02457 3.20613 3.29215 3.39136 3.55082 3.64969 3.67483 3.69588 3.89802 4.04314 4.06087 4.12908 4.22436 4.30899 4.31626 4.34066 4.44695 4.46747 4.48114 4.58768 4.65471 4.69156 4.73845 4.81809 4.82702 4.84310 4.86792 4.89545 4.94044 4.95789 5.02514 5.06490 5.13358 5.14433 5.24589 5.26330 5.36802 5.40794 5.57186 5.76404 5.77156 6.07003 6.35251 6.75582 6.85229 7.10650 7.46788 8.10877 8.94566 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013479 B = 0.003071 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.772774 B = 9113.884406 C =10287.427018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.126 3.874 4 H 0.106 0.894 5 C -0.152 4.152 6 N -0.261 5.261 7 N -0.292 5.292 8 C -0.006 4.006 9 C -0.183 4.183 10 C -0.059 4.059 11 C 0.599 3.401 12 O -0.587 6.587 13 N -0.604 5.604 14 C 0.081 3.919 15 C -0.110 4.110 16 C -0.076 4.076 17 C -0.098 4.098 18 C 0.099 3.901 19 N -0.627 5.627 20 C -0.241 4.241 21 H 0.047 0.953 22 C -0.025 4.025 23 N -0.955 5.955 24 Si 0.951 3.049 25 H -0.263 1.263 26 H -0.306 1.306 27 H -0.274 1.274 28 C 0.145 3.855 29 C 0.125 3.875 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.222 0.778 39 H 0.205 0.795 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.074 0.926 43 H 0.121 0.879 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.013 0.987 47 H 0.042 0.958 48 H 0.265 0.735 49 H 0.037 0.963 50 H 0.000 1.000 51 H 0.101 0.899 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.334 -23.421 -13.336 29.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C 0.026 3.974 4 H 0.124 0.876 5 C -0.210 4.210 6 N -0.050 5.050 7 N -0.124 5.124 8 C -0.181 4.181 9 C -0.212 4.212 10 C -0.187 4.187 11 C 0.388 3.612 12 O -0.468 6.468 13 N -0.336 5.336 14 C -0.039 4.039 15 C -0.149 4.149 16 C -0.078 4.078 17 C -0.136 4.136 18 C -0.025 4.025 19 N -0.354 5.354 20 C -0.370 4.370 21 H 0.064 0.936 22 C -0.221 4.221 23 N -0.601 5.601 24 Si 0.779 3.221 25 H -0.188 1.188 26 H -0.234 1.234 27 H -0.200 1.200 28 C 0.021 3.979 29 C 0.003 3.997 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.239 0.761 39 H 0.221 0.779 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.093 0.907 43 H 0.139 0.861 44 H 0.115 0.885 45 H 0.127 0.873 46 H 0.031 0.969 47 H 0.060 0.940 48 H 0.074 0.926 49 H 0.056 0.944 50 H 0.018 0.982 51 H 0.119 0.881 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.697 -23.707 -14.102 29.585 hybrid contribution -0.923 0.667 1.347 1.764 sum 9.774 -23.040 -12.755 28.090 Atomic orbital electron populations 1.21782 0.92763 1.03335 1.02675 1.21735 0.98058 0.93197 1.02512 1.22141 0.72992 1.00120 1.02181 0.87620 1.22101 1.03733 0.99865 0.95255 1.46105 1.07781 1.40907 1.10172 1.73115 1.02450 1.18827 1.18004 1.24284 0.94734 1.02929 0.96164 1.23165 0.94544 1.04457 0.98988 1.21340 0.93697 1.10790 0.92884 1.16856 0.84676 0.77811 0.81862 1.90741 1.16494 1.61994 1.77597 1.48751 1.10534 1.54295 1.20018 1.23424 0.77817 0.97871 1.04788 1.22521 0.97251 0.96219 0.98860 1.21520 0.96131 0.92415 0.97719 1.22714 0.97169 1.00503 0.93198 1.22191 0.95642 0.93534 0.91142 1.45002 1.66289 1.22056 1.02095 1.18482 1.16286 0.90125 1.12147 0.93560 1.25999 0.97294 0.98352 1.00454 1.69912 1.36057 1.20927 1.33169 0.85782 0.77136 0.80186 0.79022 1.18792 1.23405 1.19969 1.21527 0.95393 0.92257 0.88739 1.22298 0.98654 0.93472 0.85277 0.93218 0.90637 0.90593 0.90160 0.93106 0.93370 0.90469 0.88304 0.76149 0.77868 0.86753 0.86765 0.90743 0.86053 0.88505 0.87333 0.96912 0.93975 0.92636 0.94447 0.98221 0.88088 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.67 71.98 0.70 -1.68 16 2 C -0.12 -2.32 5.67 30.59 0.17 -2.15 16 3 C 0.13 3.01 2.96 44.99 0.13 3.14 16 4 H 0.11 3.14 5.50 -2.39 -0.01 3.13 16 5 C -0.15 -2.99 9.04 71.98 0.65 -2.34 16 6 N -0.26 -6.56 3.09 -314.29 -0.97 -7.53 16 7 N -0.29 -6.52 11.50 -57.14 -0.66 -7.18 16 8 C -0.01 -0.09 12.03 85.18 1.02 0.93 16 9 C -0.18 -3.05 9.36 22.65 0.21 -2.83 16 10 C -0.06 -1.49 6.90 40.79 0.28 -1.20 16 11 C 0.60 18.10 7.88 86.59 0.68 18.78 16 12 O -0.59 -22.48 14.75 -4.10 -0.06 -22.54 16 13 N -0.60 -15.09 3.33 -812.80 -2.71 -17.79 16 14 C 0.08 1.13 5.94 86.62 0.51 1.64 16 15 C -0.11 -1.84 6.31 31.19 0.20 -1.65 16 16 C -0.08 -2.07 0.79 -51.80 -0.04 -2.11 16 17 C -0.10 -2.53 5.90 31.63 0.19 -2.35 16 18 C 0.10 4.01 4.87 86.92 0.42 4.43 16 19 N -0.63 -30.65 3.02 -692.22 -2.09 -32.74 16 20 C -0.24 -14.42 10.54 84.03 0.89 -13.54 16 21 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 22 C -0.03 -1.54 5.46 84.86 0.46 -1.08 16 23 N -0.96 -61.71 13.97 21.65 0.30 -61.41 16 24 Si 0.95 48.81 24.63 68.60 1.69 50.50 16 25 H -0.26 -12.40 7.11 99.48 0.71 -11.70 16 26 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 27 H -0.27 -14.02 6.66 99.48 0.66 -13.35 16 28 C 0.15 5.79 6.37 86.19 0.55 6.34 16 29 C 0.13 3.57 6.04 86.05 0.52 4.09 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.99 6.56 -2.39 -0.02 0.97 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 37 H 0.10 1.53 6.56 -2.39 -0.02 1.52 16 38 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.20 1.79 5.08 -2.91 -0.01 1.77 16 40 H 0.11 1.20 4.57 -2.39 -0.01 1.19 16 41 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.07 1.37 7.41 -2.39 -0.02 1.35 16 43 H 0.12 1.26 7.62 -2.39 -0.02 1.24 16 44 H 0.10 2.19 7.90 -2.39 -0.02 2.17 16 45 H 0.11 2.04 7.65 -2.38 -0.02 2.02 16 46 H 0.01 0.56 5.18 -2.39 -0.01 0.55 16 47 H 0.04 1.80 7.91 -2.39 -0.02 1.78 16 48 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 49 H 0.04 1.46 7.48 -2.39 -0.02 1.44 16 50 H 0.00 -0.02 7.63 -2.39 -0.02 -0.03 16 51 H 0.10 2.36 7.59 -2.38 -0.02 2.34 16 52 H 0.04 1.63 7.40 -2.39 -0.02 1.62 16 Total: -1.00 -83.43 394.31 3.93 -79.49 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.88 Total: 10.76 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 7.55 Total: 8.45 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -6.13 Total: -126.66 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.06 Total: -22.54 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 1.69 Total: 50.50 kcal Total: -83.43 3.93 -79.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041331698.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.060 kcal (2) G-P(sol) polarization free energy of solvation -83.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds