Wall clock time and date at job start Wed Apr 1 2020 04:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47087 * 2 1 4 4 N 1.46497 * 109.47165 * 180.02562 * 3 2 1 5 5 N 1.39927 * 125.75453 * 270.00057 * 4 3 2 6 6 C 1.30456 * 108.89784 * 179.73700 * 5 4 3 7 7 C 1.41292 * 108.02013 * 0.40796 * 6 5 4 8 8 C 1.47425 * 126.41087 * 179.85425 * 7 6 5 9 9 O 1.21611 * 119.99656 * 155.44584 * 8 7 6 10 10 N 1.34775 * 120.00394 * 335.44447 * 8 7 6 11 11 C 1.47559 * 125.67054 * 354.55405 * 10 8 7 12 12 C 1.55188 * 105.00301 * 203.85417 * 11 10 8 13 13 C 1.53715 * 101.43909 * 324.52774 * 12 11 10 14 14 C 1.53661 * 111.40437 * 272.72151 * 13 12 11 15 15 C 1.55182 * 101.41594 * 272.69916 * 14 13 12 16 16 N 1.47557 * 105.01033 * 324.50322 * 15 14 13 17 17 C 1.36934 * 125.67827 * 203.86046 * 16 15 14 18 18 H 1.08000 * 120.00145 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99714 * 359.97438 * 17 16 15 20 20 N 1.31616 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99618 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47215 * 89.99891 * 21 19 17 23 23 H 1.48503 * 109.46682 * 209.99913 * 21 19 17 24 24 H 1.48499 * 109.47155 * 329.99570 * 21 19 17 25 25 C 1.47412 * 108.65000 * 23.85903 * 16 15 14 26 26 C 1.47405 * 125.67395 * 174.55395 * 10 8 7 27 27 C 1.34259 * 125.75283 * 89.99607 * 4 3 2 28 28 C 1.50698 * 126.29330 * 0.02711 * 27 4 3 29 29 H 1.08996 * 109.47096 * 299.99916 * 1 2 3 30 30 H 1.08995 * 109.47009 * 60.00204 * 1 2 3 31 31 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47096 * 240.00084 * 2 1 3 33 33 H 1.08998 * 109.47495 * 119.99638 * 2 1 3 34 34 H 1.08997 * 109.46736 * 59.99663 * 3 2 1 35 35 H 1.09006 * 109.46584 * 299.99882 * 3 2 1 36 36 H 1.08003 * 125.98715 * 180.25635 * 6 5 4 37 37 H 1.08995 * 110.33550 * 322.74034 * 11 10 8 38 38 H 1.09005 * 110.33626 * 84.87416 * 11 10 8 39 39 H 1.09010 * 111.02871 * 82.54079 * 12 11 10 40 40 H 1.09001 * 111.03609 * 206.42692 * 12 11 10 41 41 H 1.09000 * 111.03471 * 30.72905 * 14 13 12 42 42 H 1.09001 * 111.03527 * 154.66956 * 14 13 12 43 43 H 1.09005 * 110.33549 * 205.62111 * 15 14 13 44 44 H 1.09006 * 110.42271 * 83.43091 * 15 14 13 45 45 H 0.96996 * 119.99793 * 179.97438 * 20 19 17 46 46 H 1.08993 * 109.98613 * 238.54805 * 25 16 15 47 47 H 1.09002 * 109.98464 * 117.23975 * 25 16 15 48 48 H 1.09006 * 109.98429 * 297.24217 * 26 10 8 49 49 H 1.08997 * 109.98463 * 58.51077 * 26 10 8 50 50 H 1.09000 * 109.46750 * 269.99409 * 28 27 4 51 51 H 1.09006 * 109.47403 * 29.99249 * 28 27 4 52 52 H 1.09003 * 109.47619 * 149.99734 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 7 4.3231 1.4424 1.1346 6 6 5.5714 1.4368 0.7558 7 6 5.5995 1.4427 -0.6569 8 6 6.8032 1.4424 -1.5081 9 8 6.7450 1.0098 -2.6432 10 7 7.9680 1.9217 -1.0286 11 6 8.1551 2.5767 0.2804 12 6 9.4222 3.4566 0.1117 13 6 10.2775 2.5841 -0.8210 14 6 11.1321 1.5844 -0.0264 15 6 12.3991 2.4304 0.2691 16 7 12.5866 3.2695 -0.9301 17 6 13.7701 3.8223 -1.3410 18 1 13.8026 4.4243 -2.2370 19 6 14.9278 3.6098 -0.6051 20 7 14.8881 2.8765 0.4872 21 14 16.5422 4.3645 -1.1652 22 1 16.6979 5.7093 -0.5551 23 1 17.6687 3.4949 -0.7409 24 1 16.5433 4.4891 -2.6450 25 6 11.2878 3.4136 -1.6123 26 6 9.2668 1.8787 -1.7243 27 6 4.2890 1.4427 -1.0905 28 6 3.8238 1.4434 -2.5239 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 6.4324 1.4314 1.4077 37 1 7.2919 3.1975 0.5202 38 1 8.3117 1.8298 1.0588 39 1 9.1774 4.4087 -0.3593 40 1 9.9204 3.6128 1.0686 41 1 10.6335 1.2910 0.8974 42 1 11.3770 0.7114 -0.6314 43 1 13.2623 1.7812 0.4158 44 1 12.2425 3.0557 1.1482 45 1 15.6971 2.7278 1.0011 46 1 11.3596 3.0386 -2.6332 47 1 10.9853 4.4608 -1.6201 48 1 9.5693 0.8439 -1.8849 49 1 9.1949 2.3982 -2.6798 50 1 3.7114 0.4158 -2.8699 51 1 2.8652 1.9575 -2.5947 52 1 4.5584 1.9572 -3.1441 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041756593.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:00 Heat of formation + Delta-G solvation = 65.453433 kcal Electronic energy + Delta-G solvation = -30790.368001 eV Core-core repulsion = 26792.078157 eV Total energy + Delta-G solvation = -3998.289844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.73191 -39.98676 -38.13005 -35.90304 -35.60214 -32.89292 -32.56573 -31.59080 -30.33363 -29.18436 -28.67158 -27.58512 -26.77862 -25.43806 -23.85742 -23.00797 -22.49665 -21.78445 -20.39867 -20.20232 -19.08055 -18.63573 -17.33064 -16.81745 -16.22183 -16.06671 -15.65426 -15.47961 -15.12860 -14.73930 -14.61697 -14.25778 -13.87125 -13.75671 -13.49607 -13.38168 -13.12193 -12.94787 -12.82566 -12.68996 -12.52994 -12.49527 -12.43285 -12.31439 -11.92520 -11.80449 -11.45014 -11.40439 -11.27109 -11.06565 -11.02404 -10.90564 -10.74186 -10.19839 -10.02499 -9.91614 -9.76827 -9.71937 -9.62823 -9.45534 -8.82697 -8.62733 -8.40332 -6.80712 -5.63225 -3.04222 1.35018 2.02680 2.07558 3.11959 3.39226 3.41704 3.46919 3.48734 4.05008 4.22288 4.31262 4.47031 4.50683 4.56350 4.71521 4.73923 4.79701 4.83357 4.96647 5.06705 5.09180 5.12788 5.25190 5.25949 5.37558 5.42990 5.44305 5.48444 5.51478 5.56913 5.60079 5.68133 5.76633 5.85999 5.89912 6.05004 6.10910 6.16335 6.23956 6.29200 6.37345 6.43508 6.59398 6.60598 6.66722 6.80227 6.88474 7.35381 7.53133 7.65020 7.68923 7.87980 8.33954 8.38163 9.24377 9.84987 10.50343 11.40788 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.035786 B = 0.001967 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.251615 B =14231.487782 C =14619.698217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.128 3.872 4 N -0.361 5.361 5 N -0.299 5.299 6 C 0.082 3.918 7 C -0.288 4.288 8 C 0.608 3.392 9 O -0.551 6.551 10 N -0.611 5.611 11 C 0.099 3.901 12 C -0.114 4.114 13 C -0.081 4.081 14 C -0.131 4.131 15 C 0.155 3.845 16 N -0.604 5.604 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.152 3.848 26 C 0.128 3.872 27 C 0.151 3.849 28 C -0.093 4.093 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.192 0.808 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.012 0.988 45 H 0.251 0.749 46 H 0.027 0.973 47 H 0.025 0.975 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.088 0.912 51 H 0.069 0.931 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.333 -3.773 0.410 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.007 3.993 4 N -0.141 5.141 5 N -0.118 5.118 6 C -0.105 4.105 7 C -0.303 4.303 8 C 0.398 3.602 9 O -0.430 6.430 10 N -0.344 5.344 11 C -0.024 4.024 12 C -0.152 4.152 13 C -0.082 4.082 14 C -0.170 4.170 15 C 0.030 3.970 16 N -0.330 5.330 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.026 3.974 26 C 0.006 3.994 27 C 0.019 3.981 28 C -0.151 4.151 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.208 0.792 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.030 0.970 45 H 0.062 0.938 46 H 0.045 0.955 47 H 0.043 0.957 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.107 0.893 51 H 0.088 0.912 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -29.156 -4.008 0.854 29.443 hybrid contribution 1.426 0.444 -0.690 1.646 sum -27.730 -3.564 0.164 27.959 Atomic orbital electron populations 1.21694 0.94069 1.02670 1.02274 1.21938 0.96841 0.95559 1.03682 1.21880 0.73828 0.98818 1.04762 1.48498 1.06592 1.55648 1.03352 1.77189 1.01822 1.25314 1.07444 1.24271 0.95308 0.96998 0.93959 1.19948 0.92662 1.24036 0.93642 1.16823 0.80948 0.77066 0.85407 1.90748 1.84756 1.48526 1.18971 1.48383 1.07974 1.58749 1.19288 1.22586 0.98865 0.95633 0.85298 1.22650 0.93902 0.97566 1.01044 1.21542 0.94293 0.96563 0.95821 1.22911 0.98179 0.97480 0.98417 1.21969 0.94630 0.92485 0.87931 1.44601 1.02809 1.59013 1.26550 1.19081 0.84419 1.24529 1.06860 0.90517 1.24773 0.97927 1.00634 0.97383 1.69799 1.26885 1.43069 1.17381 0.86084 0.83296 0.78314 0.77879 1.21706 1.21695 1.20724 1.21050 0.86003 0.95881 0.94513 1.21827 0.81006 1.00891 0.95674 1.21437 0.90045 0.95539 0.91053 1.20577 1.01990 1.04178 0.88378 0.92184 0.92245 0.91823 0.91171 0.90769 0.88318 0.88696 0.79155 0.90744 0.91338 0.90708 0.89284 0.92193 0.91922 0.87783 0.96972 0.93791 0.95544 0.95700 0.91254 0.91325 0.89332 0.91237 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.91 37.16 0.37 -0.16 16 2 C -0.14 -0.77 6.26 -26.73 -0.17 -0.94 16 3 C 0.13 0.77 6.21 -4.04 -0.03 0.75 16 4 N -0.36 -3.60 3.58 -56.60 -0.20 -3.80 16 5 N -0.30 -3.54 12.50 30.86 0.39 -3.15 16 6 C 0.08 0.95 10.19 -16.98 -0.17 0.78 16 7 C -0.29 -3.72 5.77 -105.07 -0.61 -4.32 16 8 C 0.61 9.21 7.70 -12.52 -0.10 9.12 16 9 O -0.55 -9.78 15.87 5.27 0.08 -9.70 16 10 N -0.61 -8.78 3.34 -172.12 -0.58 -9.35 16 11 C 0.10 1.19 5.09 -2.30 -0.01 1.18 16 12 C -0.11 -1.61 5.89 -25.20 -0.15 -1.76 16 13 C -0.08 -1.35 0.62 -153.99 -0.10 -1.45 16 14 C -0.13 -2.39 5.89 -25.23 -0.15 -2.54 16 15 C 0.15 3.63 5.77 -2.31 -0.01 3.62 16 16 N -0.60 -15.18 3.41 -170.40 -0.58 -15.76 16 17 C -0.22 -6.11 10.28 -15.06 -0.15 -6.26 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -26.66 10.10 55.49 0.56 -26.10 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.15 3.10 6.42 -3.64 -0.02 3.08 16 26 C 0.13 2.02 6.05 -3.65 -0.02 2.00 16 27 C 0.15 1.66 7.00 -81.60 -0.57 1.09 16 28 C -0.09 -0.79 9.44 36.00 0.34 -0.45 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.37 7.01 -51.93 -0.36 0.01 16 36 H 0.19 1.82 5.95 -52.48 -0.31 1.51 16 37 H 0.07 0.80 6.94 -51.93 -0.36 0.43 16 38 H 0.07 0.73 7.22 -51.93 -0.37 0.36 16 39 H 0.07 1.05 7.80 -51.92 -0.40 0.64 16 40 H 0.09 1.28 7.89 -51.93 -0.41 0.87 16 41 H 0.06 0.96 7.88 -51.93 -0.41 0.55 16 42 H 0.06 1.16 7.79 -51.93 -0.40 0.76 16 43 H 0.10 2.80 5.89 -51.93 -0.31 2.49 16 44 H 0.01 0.30 8.10 -51.93 -0.42 -0.12 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.03 0.55 7.78 -51.93 -0.40 0.14 16 47 H 0.03 0.51 7.61 -51.93 -0.40 0.11 16 48 H 0.07 1.13 7.61 -51.93 -0.40 0.74 16 49 H 0.07 1.11 7.78 -51.93 -0.40 0.71 16 50 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.07 0.38 7.05 -51.93 -0.37 0.02 16 52 H 0.10 0.99 7.20 -51.93 -0.37 0.62 16 LS Contribution 404.30 15.07 6.09 6.09 Total: -1.00 -33.41 404.30 -9.52 -42.93 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.61 Total: -1.50 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.64 Total: 3.31 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.41 Total: -58.16 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.41 -9.52 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041756593.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.380 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds