Wall clock time and date at job start Wed Apr 1 2020 04:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47087 * 2 1 4 4 N 1.46497 * 109.47165 * 180.02562 * 3 2 1 5 5 N 1.39927 * 125.75453 * 270.00057 * 4 3 2 6 6 C 1.30456 * 108.89784 * 179.73700 * 5 4 3 7 7 C 1.41292 * 108.02013 * 0.40796 * 6 5 4 8 8 C 1.47425 * 126.41087 * 179.85425 * 7 6 5 9 9 O 1.21611 * 119.99656 * 155.44584 * 8 7 6 10 10 N 1.34775 * 120.00394 * 335.44447 * 8 7 6 11 11 C 1.47559 * 125.67054 * 354.55405 * 10 8 7 12 12 C 1.55188 * 105.00301 * 203.85417 * 11 10 8 13 13 C 1.53715 * 101.43909 * 324.52774 * 12 11 10 14 14 C 1.53661 * 111.40437 * 272.72151 * 13 12 11 15 15 C 1.55182 * 101.41594 * 272.69916 * 14 13 12 16 16 N 1.47557 * 105.01033 * 324.50322 * 15 14 13 17 17 C 1.36934 * 125.67827 * 203.86046 * 16 15 14 18 18 H 1.08000 * 120.00145 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99714 * 359.97438 * 17 16 15 20 20 N 1.31616 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99618 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47215 * 89.99891 * 21 19 17 23 23 H 1.48503 * 109.46682 * 209.99913 * 21 19 17 24 24 H 1.48499 * 109.47155 * 329.99570 * 21 19 17 25 25 C 1.47412 * 108.65000 * 23.85903 * 16 15 14 26 26 C 1.47405 * 125.67395 * 174.55395 * 10 8 7 27 27 C 1.34259 * 125.75283 * 89.99607 * 4 3 2 28 28 C 1.50698 * 126.29330 * 0.02711 * 27 4 3 29 29 H 1.08996 * 109.47096 * 299.99916 * 1 2 3 30 30 H 1.08995 * 109.47009 * 60.00204 * 1 2 3 31 31 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47096 * 240.00084 * 2 1 3 33 33 H 1.08998 * 109.47495 * 119.99638 * 2 1 3 34 34 H 1.08997 * 109.46736 * 59.99663 * 3 2 1 35 35 H 1.09006 * 109.46584 * 299.99882 * 3 2 1 36 36 H 1.08003 * 125.98715 * 180.25635 * 6 5 4 37 37 H 1.08995 * 110.33550 * 322.74034 * 11 10 8 38 38 H 1.09005 * 110.33626 * 84.87416 * 11 10 8 39 39 H 1.09010 * 111.02871 * 82.54079 * 12 11 10 40 40 H 1.09001 * 111.03609 * 206.42692 * 12 11 10 41 41 H 1.09000 * 111.03471 * 30.72905 * 14 13 12 42 42 H 1.09001 * 111.03527 * 154.66956 * 14 13 12 43 43 H 1.09005 * 110.33549 * 205.62111 * 15 14 13 44 44 H 1.09006 * 110.42271 * 83.43091 * 15 14 13 45 45 H 0.96996 * 119.99793 * 179.97438 * 20 19 17 46 46 H 1.08993 * 109.98613 * 238.54805 * 25 16 15 47 47 H 1.09002 * 109.98464 * 117.23975 * 25 16 15 48 48 H 1.09006 * 109.98429 * 297.24217 * 26 10 8 49 49 H 1.08997 * 109.98463 * 58.51077 * 26 10 8 50 50 H 1.09000 * 109.46750 * 269.99409 * 28 27 4 51 51 H 1.09006 * 109.47403 * 29.99249 * 28 27 4 52 52 H 1.09003 * 109.47619 * 149.99734 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 7 4.3231 1.4424 1.1346 6 6 5.5714 1.4368 0.7558 7 6 5.5995 1.4427 -0.6569 8 6 6.8032 1.4424 -1.5081 9 8 6.7450 1.0098 -2.6432 10 7 7.9680 1.9217 -1.0286 11 6 8.1551 2.5767 0.2804 12 6 9.4222 3.4566 0.1117 13 6 10.2775 2.5841 -0.8210 14 6 11.1321 1.5844 -0.0264 15 6 12.3991 2.4304 0.2691 16 7 12.5866 3.2695 -0.9301 17 6 13.7701 3.8223 -1.3410 18 1 13.8026 4.4243 -2.2370 19 6 14.9278 3.6098 -0.6051 20 7 14.8881 2.8765 0.4872 21 14 16.5422 4.3645 -1.1652 22 1 16.6979 5.7093 -0.5551 23 1 17.6687 3.4949 -0.7409 24 1 16.5433 4.4891 -2.6450 25 6 11.2878 3.4136 -1.6123 26 6 9.2668 1.8787 -1.7243 27 6 4.2890 1.4427 -1.0905 28 6 3.8238 1.4434 -2.5239 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 6.4324 1.4314 1.4077 37 1 7.2919 3.1975 0.5202 38 1 8.3117 1.8298 1.0588 39 1 9.1774 4.4087 -0.3593 40 1 9.9204 3.6128 1.0686 41 1 10.6335 1.2910 0.8974 42 1 11.3770 0.7114 -0.6314 43 1 13.2623 1.7812 0.4158 44 1 12.2425 3.0557 1.1482 45 1 15.6971 2.7278 1.0011 46 1 11.3596 3.0386 -2.6332 47 1 10.9853 4.4608 -1.6201 48 1 9.5693 0.8439 -1.8849 49 1 9.1949 2.3982 -2.6798 50 1 3.7114 0.4158 -2.8699 51 1 2.8652 1.9575 -2.5947 52 1 4.5584 1.9572 -3.1441 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041756593.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:59 Heat of formation + Delta-G solvation = 45.684780 kcal Electronic energy + Delta-G solvation = -30791.225234 eV Core-core repulsion = 26792.078157 eV Total energy + Delta-G solvation = -3999.147077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.57137 -41.24603 -39.45260 -37.15673 -36.40489 -34.48772 -33.44488 -32.50759 -31.79819 -30.50443 -30.22391 -28.56800 -27.45866 -26.97967 -25.31446 -24.26012 -23.03041 -22.77358 -22.02951 -21.18275 -20.28126 -19.80492 -18.82615 -18.20722 -17.26449 -16.96470 -16.74263 -16.57409 -16.34112 -15.88719 -15.71786 -15.54345 -15.28892 -14.86604 -14.52766 -14.29823 -14.19015 -13.97276 -13.89248 -13.75619 -13.68029 -13.59368 -13.28785 -13.04297 -12.98155 -12.93562 -12.87893 -12.62118 -12.60730 -12.37771 -12.29231 -11.99314 -11.97654 -11.76583 -11.70570 -11.54572 -11.37987 -11.16726 -10.90611 -10.70195 -10.38546 -9.80507 -9.47215 -8.84121 -7.74439 -5.17673 0.50170 1.15184 1.35284 1.48221 1.49564 1.58287 2.02382 2.33744 2.51896 3.30982 3.38760 3.54561 3.56694 3.59038 3.69396 3.82903 3.84583 3.93420 3.99309 4.14678 4.24601 4.27177 4.29080 4.33715 4.43441 4.49982 4.56786 4.63191 4.65131 4.69714 4.77655 4.78642 4.80506 4.87620 4.92599 4.97710 5.04055 5.07496 5.09503 5.11412 5.14121 5.27077 5.32909 5.36077 5.36763 5.45625 5.50890 5.70313 5.87245 5.90349 6.34989 6.52228 6.58990 7.14691 7.20602 7.81541 8.45742 9.27229 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.035786 B = 0.001967 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.251615 B =14231.487782 C =14619.698217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.119 3.881 4 N -0.355 5.355 5 N -0.318 5.318 6 C 0.084 3.916 7 C -0.316 4.316 8 C 0.607 3.393 9 O -0.585 6.585 10 N -0.611 5.611 11 C 0.106 3.894 12 C -0.110 4.110 13 C -0.069 4.069 14 C -0.115 4.115 15 C 0.159 3.841 16 N -0.625 5.625 17 C -0.237 4.237 18 H 0.078 0.922 19 C -0.066 4.066 20 N -0.947 5.947 21 Si 0.978 3.022 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.272 1.272 25 C 0.148 3.852 26 C 0.136 3.864 27 C 0.155 3.845 28 C -0.091 4.091 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.208 0.792 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.068 0.932 44 H -0.005 1.005 45 H 0.246 0.754 46 H 0.022 0.978 47 H 0.028 0.972 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.093 0.907 51 H 0.103 0.897 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.996 -3.387 0.539 31.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.001 4.001 4 N -0.134 5.134 5 N -0.137 5.137 6 C -0.103 4.103 7 C -0.331 4.331 8 C 0.398 3.602 9 O -0.467 6.467 10 N -0.343 5.343 11 C -0.016 4.016 12 C -0.148 4.148 13 C -0.070 4.070 14 C -0.153 4.153 15 C 0.034 3.966 16 N -0.351 5.351 17 C -0.367 4.367 18 H 0.096 0.904 19 C -0.259 4.259 20 N -0.597 5.597 21 Si 0.806 3.194 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.197 1.197 25 C 0.023 3.977 26 C 0.013 3.987 27 C 0.021 3.979 28 C -0.149 4.149 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.140 0.860 36 H 0.224 0.776 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.013 0.987 45 H 0.056 0.944 46 H 0.040 0.960 47 H 0.046 0.954 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.112 0.888 51 H 0.122 0.878 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -31.865 -3.612 1.000 32.084 hybrid contribution 2.176 0.329 -0.761 2.329 sum -29.689 -3.282 0.239 29.871 Atomic orbital electron populations 1.21672 0.92414 1.02985 1.03193 1.21872 0.98143 0.94892 1.02515 1.22281 0.71681 0.99553 1.06539 1.48803 1.07750 1.54317 1.02541 1.77150 1.02125 1.25902 1.08553 1.24496 0.95829 0.96428 0.93560 1.19888 0.92495 1.26657 0.94060 1.17150 0.81485 0.76333 0.85194 1.90722 1.85307 1.50137 1.20560 1.48389 1.07224 1.58783 1.19938 1.22687 0.98414 0.95898 0.84596 1.22625 0.94263 0.97631 1.00242 1.21353 0.93741 0.96106 0.95842 1.22742 0.96003 0.96636 0.99913 1.21745 0.95718 0.92028 0.87134 1.44889 1.03750 1.59167 1.27318 1.19433 0.85801 1.24481 1.06937 0.90426 1.25579 1.01026 1.01501 0.97754 1.70050 1.27183 1.44160 1.18282 0.85087 0.79180 0.77269 0.77844 1.21380 1.21993 1.19699 1.21196 0.85206 0.96751 0.94562 1.21580 0.81669 1.00186 0.95272 1.21783 0.89797 0.94079 0.92224 1.20632 1.03050 1.04712 0.86491 0.91712 0.90877 0.91854 0.91625 0.92675 0.87534 0.85964 0.77595 0.88748 0.89253 0.90434 0.89259 0.89199 0.92380 0.91435 0.98656 0.94387 0.95973 0.95386 0.91868 0.92046 0.88814 0.87826 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 9.91 71.98 0.71 0.06 16 2 C -0.14 -1.19 6.26 30.60 0.19 -1.00 16 3 C 0.12 1.10 6.21 86.38 0.54 1.64 16 4 N -0.35 -6.26 3.58 -332.99 -1.19 -7.45 16 5 N -0.32 -6.90 12.50 -56.27 -0.70 -7.61 16 6 C 0.08 1.77 10.19 85.65 0.87 2.65 16 7 C -0.32 -7.66 5.77 -20.15 -0.12 -7.78 16 8 C 0.61 17.79 7.70 86.66 0.67 18.46 16 9 O -0.59 -20.70 15.87 -4.07 -0.06 -20.76 16 10 N -0.61 -16.63 3.34 -816.72 -2.73 -19.36 16 11 C 0.11 2.27 5.09 86.93 0.44 2.71 16 12 C -0.11 -2.90 5.89 31.59 0.19 -2.72 16 13 C -0.07 -2.26 0.62 -51.84 -0.03 -2.29 16 14 C -0.11 -4.10 5.89 31.57 0.19 -3.91 16 15 C 0.16 7.61 5.77 86.93 0.50 8.11 16 16 N -0.63 -32.04 3.41 -693.03 -2.36 -34.41 16 17 C -0.24 -13.39 10.28 84.04 0.86 -12.53 16 18 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 19 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 20 N -0.95 -56.21 10.10 21.65 0.22 -56.00 16 21 Si 0.98 45.95 29.55 68.60 2.03 47.97 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 C 0.15 6.09 6.42 86.14 0.55 6.64 16 26 C 0.14 4.18 6.05 86.14 0.52 4.71 16 27 C 0.15 3.10 7.00 42.14 0.29 3.40 16 28 C -0.09 -1.35 9.44 71.24 0.67 -0.68 16 29 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.12 0.48 7.01 -2.38 -0.02 0.46 16 36 H 0.21 3.39 5.95 -2.91 -0.02 3.37 16 37 H 0.09 1.72 6.94 -2.39 -0.02 1.70 16 38 H 0.09 1.60 7.22 -2.38 -0.02 1.58 16 39 H 0.08 2.03 7.80 -2.38 -0.02 2.01 16 40 H 0.09 2.41 7.89 -2.39 -0.02 2.39 16 41 H 0.09 2.68 7.88 -2.39 -0.02 2.66 16 42 H 0.06 2.13 7.79 -2.39 -0.02 2.12 16 43 H 0.07 3.76 5.89 -2.38 -0.01 3.75 16 44 H 0.00 -0.23 8.10 -2.38 -0.02 -0.25 16 45 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 46 H 0.02 0.93 7.78 -2.39 -0.02 0.91 16 47 H 0.03 1.14 7.61 -2.39 -0.02 1.12 16 48 H 0.06 2.03 7.61 -2.38 -0.02 2.01 16 49 H 0.06 1.99 7.78 -2.39 -0.02 1.97 16 50 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.10 0.78 7.05 -2.38 -0.02 0.77 16 52 H 0.08 1.53 7.20 -2.39 -0.02 1.51 16 Total: -1.00 -74.38 404.30 3.62 -70.76 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.91 Total: 12.67 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 7.52 Total: 14.18 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -6.77 Total: -124.82 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.06 Total: -20.76 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -74.38 3.62 -70.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041756593.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.445 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds