Wall clock time and date at job start Wed Apr 1 2020 04:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 N 1.46502 * 109.47461 * 179.97438 * 3 2 1 5 5 C 1.34261 * 125.75537 * 124.99290 * 4 3 2 6 6 C 1.38040 * 107.41669 * 179.74062 * 5 4 3 7 7 C 1.47426 * 126.41269 * 180.26279 * 6 5 4 8 8 O 1.21606 * 120.00235 * 204.61052 * 7 6 5 9 9 N 1.34773 * 120.00120 * 24.62209 * 7 6 5 10 10 C 1.47557 * 125.67493 * 5.11253 * 9 7 6 11 11 C 1.55433 * 104.88237 * 156.03748 * 10 9 7 12 12 C 1.53650 * 101.31306 * 35.83016 * 11 10 9 13 13 C 1.53657 * 111.42371 * 204.77744 * 12 11 10 14 14 C 1.55186 * 101.41559 * 272.73057 * 13 12 11 15 15 N 1.47555 * 105.00959 * 324.50692 * 14 13 12 16 16 C 1.36934 * 125.67787 * 203.82743 * 15 14 13 17 17 H 1.08004 * 120.00400 * 180.02562 * 16 15 14 18 18 C 1.38811 * 119.99870 * 0.03894 * 16 15 14 19 19 N 1.31620 * 120.00020 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00467 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46590 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47335 * 119.99816 * 20 18 16 23 23 H 1.48496 * 109.47150 * 240.00362 * 20 18 16 24 24 C 1.47405 * 108.65206 * 23.85938 * 15 14 13 25 25 C 1.47412 * 125.67642 * 185.42823 * 9 7 6 26 26 C 1.41289 * 107.17102 * 0.26714 * 6 5 4 27 27 C 1.50702 * 125.98634 * 179.97438 * 26 6 5 28 28 N 1.30442 * 108.02571 * 0.02562 * 26 6 5 29 29 H 1.08998 * 109.46780 * 60.00183 * 1 2 3 30 30 H 1.09002 * 109.47141 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47006 * 299.99782 * 1 2 3 32 32 H 1.08995 * 109.47432 * 239.99684 * 2 1 3 33 33 H 1.09012 * 109.46829 * 119.99656 * 2 1 3 34 34 H 1.09003 * 109.47377 * 59.99838 * 3 2 1 35 35 H 1.08998 * 109.47135 * 299.99599 * 3 2 1 36 36 H 1.07996 * 126.28819 * 0.02562 * 5 4 3 37 37 H 1.09004 * 110.34111 * 275.02765 * 10 9 7 38 38 H 1.09005 * 110.33140 * 37.26182 * 10 9 7 39 39 H 1.09002 * 111.25543 * 277.75568 * 11 10 9 40 40 H 1.09002 * 110.95629 * 153.77256 * 11 10 9 41 41 H 1.09001 * 111.03194 * 30.76250 * 13 12 11 42 42 H 1.08997 * 111.04070 * 154.70086 * 13 12 11 43 43 H 1.08997 * 110.33256 * 205.61653 * 14 13 12 44 44 H 1.09008 * 110.41819 * 83.43224 * 14 13 12 45 45 H 0.96998 * 120.00057 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.98871 * 238.53932 * 24 15 14 47 47 H 1.09003 * 109.98692 * 117.23383 * 24 15 14 48 48 H 1.09000 * 109.98458 * 301.45423 * 25 9 7 49 49 H 1.08997 * 109.98477 * 62.71598 * 25 9 7 50 50 H 1.09003 * 109.47207 * 90.00579 * 27 26 6 51 51 H 1.09000 * 109.47039 * 210.00185 * 27 26 6 52 52 H 1.09001 * 109.47250 * 330.00170 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2899 2.0673 -0.8917 6 6 5.6000 1.8232 -0.5319 7 6 6.8042 2.3174 -1.2241 8 8 7.8556 1.7152 -1.1200 9 7 6.7399 3.4366 -1.9722 10 6 5.5651 4.3203 -2.0995 11 6 6.1472 5.7013 -2.5118 12 6 7.3129 5.2784 -3.4190 13 6 8.4029 6.3601 -3.4731 14 6 7.8877 7.2577 -4.6294 15 7 7.2688 6.3249 -5.5907 16 6 7.0930 6.5571 -6.9287 17 1 6.6266 5.8071 -7.5503 18 6 7.5145 7.7565 -7.4862 19 7 8.0827 8.6706 -6.7287 20 14 7.2741 8.0737 -9.3113 21 1 6.6148 6.8984 -9.9353 22 1 6.4214 9.2753 -9.4968 23 1 8.5942 8.2997 -9.9526 24 6 6.8706 5.1017 -4.8710 25 6 7.8295 3.9781 -2.8045 26 6 5.5708 1.0111 0.6239 27 6 6.7716 0.4926 1.3724 28 7 4.3223 0.7879 0.9289 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9572 2.6566 -1.7334 37 1 4.8907 3.9454 -2.8695 38 1 5.0450 4.3987 -1.1448 39 1 6.5073 6.2534 -1.6437 40 1 5.4118 6.2846 -3.0660 41 1 8.4490 6.9162 -2.5368 42 1 9.3727 5.9265 -3.7169 43 1 8.7179 7.7875 -5.0964 44 1 7.1471 7.9668 -4.2593 45 1 8.3775 9.5085 -7.1183 46 1 7.3652 4.2344 -5.3082 47 1 5.7887 4.9771 -4.9183 48 1 8.7049 4.1797 -2.1872 49 1 8.0845 3.2688 -3.5918 50 1 7.0560 1.2085 2.1437 51 1 6.5260 -0.4627 1.8362 52 1 7.6014 0.3570 0.6788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041756645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:31 Heat of formation + Delta-G solvation = 66.032608 kcal Electronic energy + Delta-G solvation = -30895.792941 eV Core-core repulsion = 26897.528212 eV Total energy + Delta-G solvation = -3998.264729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.67041 -40.00377 -38.16088 -35.90972 -35.62125 -32.93096 -32.69119 -30.96624 -30.08015 -29.33648 -29.04039 -28.21334 -26.25492 -25.43926 -23.99453 -22.91907 -22.25213 -21.77449 -20.45468 -20.25623 -19.17067 -18.72475 -17.18981 -16.80722 -16.42758 -16.03665 -15.90299 -15.15899 -15.09264 -14.79322 -14.53963 -14.27072 -13.93031 -13.90287 -13.74898 -13.35446 -13.02739 -12.80503 -12.69895 -12.54912 -12.48304 -12.38571 -12.29906 -12.12692 -11.89241 -11.79900 -11.51893 -11.39494 -11.37033 -11.21328 -10.93484 -10.89496 -10.79406 -10.21498 -10.03557 -9.96234 -9.81817 -9.74322 -9.52440 -9.47720 -8.83398 -8.66562 -8.46755 -6.84766 -5.67093 -3.08410 1.36357 2.03883 2.07936 3.10197 3.38158 3.38217 3.43963 3.46295 3.97065 4.31662 4.37821 4.45913 4.48014 4.62414 4.70480 4.72240 4.80057 4.94455 5.00141 5.03667 5.15202 5.17485 5.30827 5.34616 5.41796 5.44632 5.49349 5.51388 5.53718 5.56457 5.71625 5.78622 5.80564 5.82559 5.88134 5.98665 6.06022 6.17264 6.26194 6.31923 6.35643 6.40044 6.54210 6.59307 6.65030 6.74167 6.83495 7.40324 7.49801 7.61261 7.66370 7.84565 8.32972 8.34386 9.20390 9.81036 10.46174 11.36913 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.002368 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.721560 B =11822.608833 C =13111.090615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.130 3.870 4 N -0.360 5.360 5 C 0.097 3.903 6 C -0.281 4.281 7 C 0.608 3.392 8 O -0.545 6.545 9 N -0.614 5.614 10 C 0.097 3.903 11 C -0.113 4.113 12 C -0.082 4.082 13 C -0.131 4.131 14 C 0.155 3.845 15 N -0.604 5.604 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.152 3.848 25 C 0.127 3.873 26 C 0.129 3.871 27 C -0.081 4.081 28 N -0.301 5.301 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.184 0.816 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.013 0.987 45 H 0.251 0.749 46 H 0.026 0.974 47 H 0.022 0.978 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 -13.101 16.359 24.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.009 3.991 4 N -0.138 5.138 5 C -0.054 4.054 6 C -0.296 4.296 7 C 0.397 3.603 8 O -0.423 6.423 9 N -0.347 5.347 10 C -0.026 4.026 11 C -0.151 4.151 12 C -0.083 4.083 13 C -0.170 4.170 14 C 0.030 3.970 15 N -0.330 5.330 16 C -0.349 4.349 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.026 3.974 25 C 0.005 3.995 26 C -0.038 4.038 27 C -0.139 4.139 28 N -0.122 5.122 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.201 0.799 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.123 0.877 44 H 0.031 0.969 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.040 0.960 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.090 0.910 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.679 -13.911 17.103 25.432 hybrid contribution 0.086 0.741 -1.655 1.815 sum -12.593 -13.170 15.448 23.889 Atomic orbital electron populations 1.21715 0.94247 1.02643 1.02237 1.21805 0.96520 0.95191 1.03961 1.21941 0.73474 0.99411 1.04281 1.48469 1.06718 1.38108 1.20535 1.23370 0.90471 0.96427 0.95120 1.20171 0.92548 1.13130 1.03746 1.16867 0.86961 0.78898 0.77536 1.90730 1.30763 1.57585 1.63227 1.48496 1.15320 1.24443 1.46480 1.22623 0.88722 0.90650 1.00563 1.22674 0.98030 0.94981 0.99390 1.21548 0.96537 0.94248 0.95950 1.22872 0.96907 0.96768 1.00430 1.21960 0.98173 0.90313 0.86561 1.44629 1.69945 1.13692 1.04753 1.19111 1.32912 1.00269 0.82619 0.90508 1.24781 1.01242 0.96505 0.98186 1.69811 1.46224 1.07760 1.33264 0.86016 0.77336 0.77679 0.84576 1.20568 1.21805 1.21740 1.21129 0.96647 0.91099 0.88540 1.21883 0.89692 0.94429 0.93470 1.22423 0.93396 0.94344 0.93680 1.20367 0.92980 1.00745 0.99846 1.77111 1.01134 1.20011 1.13984 0.92267 0.91863 0.92234 0.91286 0.90268 0.89289 0.88252 0.79871 0.91466 0.90926 0.90647 0.89274 0.92002 0.91795 0.87743 0.96928 0.93795 0.95647 0.95993 0.91153 0.91197 0.90465 0.90969 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.91 37.16 0.37 -0.26 16 2 C -0.14 -0.82 6.11 -26.73 -0.16 -0.98 16 3 C 0.13 0.79 6.49 -4.04 -0.03 0.76 16 4 N -0.36 -3.56 3.65 -60.81 -0.22 -3.78 16 5 C 0.10 0.99 9.63 -16.56 -0.16 0.83 16 6 C -0.28 -3.68 5.79 -105.07 -0.61 -4.29 16 7 C 0.61 9.28 7.75 -12.52 -0.10 9.19 16 8 O -0.54 -9.87 15.51 5.27 0.08 -9.79 16 9 N -0.61 -8.68 3.34 -171.96 -0.57 -9.25 16 10 C 0.10 1.12 5.18 -2.17 -0.01 1.11 16 11 C -0.11 -1.52 5.87 -25.10 -0.15 -1.67 16 12 C -0.08 -1.33 0.61 -154.02 -0.09 -1.42 16 13 C -0.13 -2.36 5.93 -25.23 -0.15 -2.51 16 14 C 0.15 3.59 5.83 -2.31 -0.01 3.58 16 15 N -0.60 -14.90 3.41 -170.41 -0.58 -15.48 16 16 C -0.22 -6.01 10.28 -15.06 -0.15 -6.17 16 17 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 19 N -0.92 -26.37 10.10 55.49 0.56 -25.81 16 20 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.15 3.01 6.39 -3.64 -0.02 2.98 16 25 C 0.13 1.97 6.14 -3.64 -0.02 1.95 16 26 C 0.13 1.66 7.26 -82.02 -0.60 1.07 16 27 C -0.08 -0.89 10.18 36.01 0.37 -0.52 16 28 N -0.30 -3.69 12.33 33.89 0.42 -3.27 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.37 8.06 -51.93 -0.42 -0.04 16 36 H 0.18 1.38 5.91 -52.49 -0.31 1.07 16 37 H 0.07 0.69 7.30 -51.93 -0.38 0.31 16 38 H 0.07 0.71 6.92 -51.93 -0.36 0.35 16 39 H 0.07 0.96 7.82 -51.93 -0.41 0.56 16 40 H 0.09 1.27 7.94 -51.93 -0.41 0.86 16 41 H 0.06 0.99 7.78 -51.93 -0.40 0.59 16 42 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 43 H 0.10 2.78 5.89 -51.93 -0.31 2.48 16 44 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.03 0.52 7.44 -51.93 -0.39 0.13 16 47 H 0.02 0.43 7.78 -51.93 -0.40 0.02 16 48 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 49 H 0.07 1.14 7.42 -51.93 -0.39 0.76 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 52 H 0.10 1.22 6.44 -51.93 -0.33 0.89 16 LS Contribution 406.07 15.07 6.12 6.12 Total: -1.00 -33.19 406.07 -9.53 -42.72 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.68 Total: -1.41 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.63 Total: 3.22 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.40 Total: -57.59 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.19 -9.53 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041756645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.756 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds