Wall clock time and date at job start Wed Apr 1 2020 04:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 N 1.46502 * 109.47461 * 179.97438 * 3 2 1 5 5 C 1.34261 * 125.75537 * 124.99290 * 4 3 2 6 6 C 1.38040 * 107.41669 * 179.74062 * 5 4 3 7 7 C 1.47426 * 126.41269 * 180.26279 * 6 5 4 8 8 O 1.21606 * 120.00235 * 204.61052 * 7 6 5 9 9 N 1.34773 * 120.00120 * 24.62209 * 7 6 5 10 10 C 1.47557 * 125.67493 * 5.11253 * 9 7 6 11 11 C 1.55433 * 104.88237 * 156.03748 * 10 9 7 12 12 C 1.53650 * 101.31306 * 35.83016 * 11 10 9 13 13 C 1.53657 * 111.42371 * 204.77744 * 12 11 10 14 14 C 1.55186 * 101.41559 * 272.73057 * 13 12 11 15 15 N 1.47555 * 105.00959 * 324.50692 * 14 13 12 16 16 C 1.36934 * 125.67787 * 203.82743 * 15 14 13 17 17 H 1.08004 * 120.00400 * 180.02562 * 16 15 14 18 18 C 1.38811 * 119.99870 * 0.03894 * 16 15 14 19 19 N 1.31620 * 120.00020 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00467 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46590 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47335 * 119.99816 * 20 18 16 23 23 H 1.48496 * 109.47150 * 240.00362 * 20 18 16 24 24 C 1.47405 * 108.65206 * 23.85938 * 15 14 13 25 25 C 1.47412 * 125.67642 * 185.42823 * 9 7 6 26 26 C 1.41289 * 107.17102 * 0.26714 * 6 5 4 27 27 C 1.50702 * 125.98634 * 179.97438 * 26 6 5 28 28 N 1.30442 * 108.02571 * 0.02562 * 26 6 5 29 29 H 1.08998 * 109.46780 * 60.00183 * 1 2 3 30 30 H 1.09002 * 109.47141 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47006 * 299.99782 * 1 2 3 32 32 H 1.08995 * 109.47432 * 239.99684 * 2 1 3 33 33 H 1.09012 * 109.46829 * 119.99656 * 2 1 3 34 34 H 1.09003 * 109.47377 * 59.99838 * 3 2 1 35 35 H 1.08998 * 109.47135 * 299.99599 * 3 2 1 36 36 H 1.07996 * 126.28819 * 0.02562 * 5 4 3 37 37 H 1.09004 * 110.34111 * 275.02765 * 10 9 7 38 38 H 1.09005 * 110.33140 * 37.26182 * 10 9 7 39 39 H 1.09002 * 111.25543 * 277.75568 * 11 10 9 40 40 H 1.09002 * 110.95629 * 153.77256 * 11 10 9 41 41 H 1.09001 * 111.03194 * 30.76250 * 13 12 11 42 42 H 1.08997 * 111.04070 * 154.70086 * 13 12 11 43 43 H 1.08997 * 110.33256 * 205.61653 * 14 13 12 44 44 H 1.09008 * 110.41819 * 83.43224 * 14 13 12 45 45 H 0.96998 * 120.00057 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.98871 * 238.53932 * 24 15 14 47 47 H 1.09003 * 109.98692 * 117.23383 * 24 15 14 48 48 H 1.09000 * 109.98458 * 301.45423 * 25 9 7 49 49 H 1.08997 * 109.98477 * 62.71598 * 25 9 7 50 50 H 1.09003 * 109.47207 * 90.00579 * 27 26 6 51 51 H 1.09000 * 109.47039 * 210.00185 * 27 26 6 52 52 H 1.09001 * 109.47250 * 330.00170 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2899 2.0673 -0.8917 6 6 5.6000 1.8232 -0.5319 7 6 6.8042 2.3174 -1.2241 8 8 7.8556 1.7152 -1.1200 9 7 6.7399 3.4366 -1.9722 10 6 5.5651 4.3203 -2.0995 11 6 6.1472 5.7013 -2.5118 12 6 7.3129 5.2784 -3.4190 13 6 8.4029 6.3601 -3.4731 14 6 7.8877 7.2577 -4.6294 15 7 7.2688 6.3249 -5.5907 16 6 7.0930 6.5571 -6.9287 17 1 6.6266 5.8071 -7.5503 18 6 7.5145 7.7565 -7.4862 19 7 8.0827 8.6706 -6.7287 20 14 7.2741 8.0737 -9.3113 21 1 6.6148 6.8984 -9.9353 22 1 6.4214 9.2753 -9.4968 23 1 8.5942 8.2997 -9.9526 24 6 6.8706 5.1017 -4.8710 25 6 7.8295 3.9781 -2.8045 26 6 5.5708 1.0111 0.6239 27 6 6.7716 0.4926 1.3724 28 7 4.3223 0.7879 0.9289 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9572 2.6566 -1.7334 37 1 4.8907 3.9454 -2.8695 38 1 5.0450 4.3987 -1.1448 39 1 6.5073 6.2534 -1.6437 40 1 5.4118 6.2846 -3.0660 41 1 8.4490 6.9162 -2.5368 42 1 9.3727 5.9265 -3.7169 43 1 8.7179 7.7875 -5.0964 44 1 7.1471 7.9668 -4.2593 45 1 8.3775 9.5085 -7.1183 46 1 7.3652 4.2344 -5.3082 47 1 5.7887 4.9771 -4.9183 48 1 8.7049 4.1797 -2.1872 49 1 8.0845 3.2688 -3.5918 50 1 7.0560 1.2085 2.1437 51 1 6.5260 -0.4627 1.8362 52 1 7.6014 0.3570 0.6788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041756645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:30 Heat of formation + Delta-G solvation = 46.481567 kcal Electronic energy + Delta-G solvation = -30896.640738 eV Core-core repulsion = 26897.528212 eV Total energy + Delta-G solvation = -3999.112526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.53282 -41.22904 -39.46225 -37.15883 -36.42542 -34.54693 -33.50044 -32.35160 -31.26227 -30.75259 -29.76014 -29.62691 -27.49137 -26.70640 -25.26707 -24.20506 -22.85491 -22.57343 -22.17992 -21.30020 -20.27619 -19.88106 -18.83203 -17.95849 -17.43947 -17.03568 -16.82935 -16.67101 -16.14116 -15.88667 -15.72077 -15.58848 -15.31557 -15.04702 -14.48550 -14.29478 -14.08382 -13.95199 -13.85975 -13.72486 -13.61792 -13.46305 -13.10109 -13.04254 -13.02964 -12.93453 -12.85130 -12.70280 -12.66516 -12.39065 -12.25785 -11.96843 -11.95683 -11.74398 -11.61631 -11.48384 -11.44826 -11.19597 -10.87277 -10.70389 -10.35181 -9.80303 -9.50988 -8.83920 -7.74434 -5.17609 0.53157 1.09709 1.37614 1.48378 1.49229 1.59105 2.01762 2.32765 2.51556 3.27511 3.34059 3.49507 3.56894 3.67346 3.68668 3.85471 3.88882 3.90188 4.08250 4.19271 4.26322 4.27827 4.28962 4.38711 4.48858 4.51615 4.54769 4.61084 4.68144 4.73939 4.77086 4.79348 4.80958 4.89886 4.94172 4.97892 5.01163 5.08924 5.10357 5.12640 5.17593 5.25359 5.34969 5.36458 5.39954 5.50712 5.52035 5.69610 5.87040 5.90010 6.34883 6.50431 6.62110 7.14613 7.20795 7.81858 8.45895 9.27535 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.002368 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.721560 B =11822.608833 C =13111.090615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.120 3.880 4 N -0.353 5.353 5 C 0.117 3.883 6 C -0.310 4.310 7 C 0.607 3.393 8 O -0.584 6.584 9 N -0.613 5.613 10 C 0.101 3.899 11 C -0.108 4.108 12 C -0.070 4.070 13 C -0.118 4.118 14 C 0.159 3.841 15 N -0.625 5.625 16 C -0.233 4.233 17 H 0.079 0.921 18 C -0.068 4.068 19 N -0.948 5.948 20 Si 0.976 3.024 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.294 1.294 24 C 0.150 3.850 25 C 0.134 3.866 26 C 0.114 3.886 27 C -0.078 4.078 28 N -0.319 5.319 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.216 0.784 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.066 0.934 44 H -0.004 1.004 45 H 0.246 0.754 46 H 0.018 0.982 47 H 0.035 0.965 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.085 0.915 51 H 0.084 0.916 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.976 -13.507 16.993 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.001 3.999 4 N -0.130 5.130 5 C -0.036 4.036 6 C -0.325 4.325 7 C 0.398 3.602 8 O -0.466 6.466 9 N -0.345 5.345 10 C -0.021 4.021 11 C -0.146 4.146 12 C -0.071 4.071 13 C -0.157 4.157 14 C 0.034 3.966 15 N -0.352 5.352 16 C -0.362 4.362 17 H 0.097 0.903 18 C -0.260 4.260 19 N -0.598 5.598 20 Si 0.805 3.195 21 H -0.192 1.192 22 H -0.219 1.219 23 H -0.222 1.222 24 C 0.026 3.974 25 C 0.012 3.988 26 C -0.053 4.053 27 C -0.136 4.136 28 N -0.141 5.141 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.150 0.850 36 H 0.232 0.768 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.014 0.986 45 H 0.056 0.944 46 H 0.036 0.964 47 H 0.053 0.947 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.104 0.896 51 H 0.103 0.897 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.400 -14.343 17.762 27.539 hybrid contribution 0.854 0.830 -1.850 2.200 sum -14.546 -13.513 15.912 25.444 Atomic orbital electron populations 1.21683 0.92645 1.02877 1.03147 1.21737 0.97797 0.95014 1.02479 1.22367 0.71230 0.99758 1.06533 1.48819 1.07925 1.36785 1.19521 1.23730 0.89376 0.95345 0.95104 1.20076 0.92865 1.14966 1.04619 1.17185 0.87180 0.78641 0.77208 1.90707 1.32413 1.58801 1.64639 1.48491 1.15698 1.24491 1.45859 1.22787 0.87951 0.88701 1.02652 1.22654 0.96653 0.96311 0.98955 1.21365 0.97040 0.94151 0.94564 1.22721 0.97061 0.96515 0.99371 1.21711 0.96334 0.90787 0.87741 1.44913 1.70281 1.15401 1.04565 1.19455 1.32294 1.00283 0.84177 0.90281 1.25578 1.01659 0.96621 1.02137 1.70062 1.47267 1.07869 1.34631 0.85033 0.76839 0.77634 0.79975 1.19201 1.21900 1.22169 1.21273 0.97170 0.88875 0.90123 1.21644 0.90277 0.93614 0.93314 1.22658 0.93964 0.94589 0.94089 1.20329 0.92112 1.01649 0.99540 1.77078 1.01124 1.20775 1.15116 0.91100 0.92053 0.91533 0.92344 0.92221 0.88024 0.85015 0.76762 0.89484 0.88230 0.89419 0.89623 0.89442 0.92298 0.91556 0.98615 0.94439 0.96429 0.94688 0.91381 0.92472 0.89618 0.89748 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 71.98 0.71 -0.12 16 2 C -0.13 -1.30 6.11 30.59 0.19 -1.11 16 3 C 0.12 1.03 6.49 86.38 0.56 1.59 16 4 N -0.35 -5.93 3.65 -346.30 -1.26 -7.19 16 5 C 0.12 1.99 9.63 84.27 0.81 2.80 16 6 C -0.31 -7.57 5.79 -20.15 -0.12 -7.68 16 7 C 0.61 17.83 7.75 86.66 0.67 18.50 16 8 O -0.58 -21.33 15.51 -4.05 -0.06 -21.40 16 9 N -0.61 -16.02 3.34 -816.21 -2.73 -18.74 16 10 C 0.10 1.93 5.18 87.01 0.45 2.38 16 11 C -0.11 -2.59 5.87 31.65 0.19 -2.41 16 12 C -0.07 -2.18 0.61 -51.87 -0.03 -2.21 16 13 C -0.12 -4.18 5.93 31.56 0.19 -3.99 16 14 C 0.16 7.52 5.83 86.93 0.51 8.03 16 15 N -0.63 -31.03 3.41 -693.05 -2.36 -33.39 16 16 C -0.23 -12.77 10.28 84.03 0.86 -11.90 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 18 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 19 N -0.95 -55.64 10.10 21.65 0.22 -55.42 16 20 Si 0.98 45.09 29.55 68.60 2.03 47.12 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 C 0.15 5.82 6.39 86.14 0.55 6.37 16 25 C 0.13 4.00 6.14 86.14 0.53 4.53 16 26 C 0.11 2.83 7.26 43.52 0.32 3.14 16 27 C -0.08 -1.71 10.18 71.24 0.73 -0.98 16 28 N -0.32 -7.32 12.33 -46.68 -0.58 -7.90 16 29 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.13 0.33 8.06 -2.39 -0.02 0.31 16 36 H 0.22 2.12 5.91 -2.91 -0.02 2.10 16 37 H 0.09 1.37 7.30 -2.39 -0.02 1.36 16 38 H 0.10 1.45 6.92 -2.38 -0.02 1.43 16 39 H 0.09 1.94 7.82 -2.39 -0.02 1.92 16 40 H 0.09 2.18 7.94 -2.39 -0.02 2.16 16 41 H 0.09 2.65 7.78 -2.39 -0.02 2.63 16 42 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 43 H 0.07 3.67 5.89 -2.39 -0.01 3.65 16 44 H 0.00 -0.21 8.14 -2.38 -0.02 -0.22 16 45 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.02 0.71 7.44 -2.39 -0.02 0.70 16 47 H 0.04 1.28 7.78 -2.39 -0.02 1.26 16 48 H 0.07 2.07 7.86 -2.39 -0.02 2.06 16 49 H 0.06 1.85 7.42 -2.39 -0.02 1.83 16 50 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.08 2.05 6.44 -2.39 -0.02 2.03 16 Total: -1.00 -74.69 406.07 3.73 -70.96 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.90 Total: 12.34 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 7.57 Total: 13.63 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -6.71 Total: -122.64 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.06 Total: -21.40 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.69 3.73 -70.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041756645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.438 kcal (2) G-P(sol) polarization free energy of solvation -74.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds