Wall clock time and date at job start Wed Apr 1 2020 04:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47169 * 2 1 4 4 N 1.46494 * 109.47372 * 179.97438 * 3 2 1 5 5 C 1.34258 * 125.75318 * 124.99837 * 4 3 2 6 6 C 1.38048 * 107.41594 * 179.97438 * 5 4 3 7 7 C 1.47426 * 126.41392 * 179.97438 * 6 5 4 8 8 O 1.21608 * 120.00211 * 216.95619 * 7 6 5 9 9 N 1.34778 * 119.99930 * 36.96130 * 7 6 5 10 10 C 1.44475 * 117.13646 * 5.11383 * 9 7 6 11 11 C 1.50980 * 113.13031 * 148.27804 * 10 9 7 12 12 C 1.48611 * 116.02561 * 32.08137 * 11 10 9 13 13 H 1.09002 * 105.76840 * 206.02274 * 12 11 10 14 14 C 1.53321 * 114.95781 * 90.58095 * 12 11 10 15 15 C 1.54522 * 102.38222 * 196.30572 * 14 12 11 16 16 N 1.46892 * 106.66297 * 27.58751 * 15 14 12 17 17 C 1.36939 * 125.36132 * 164.88890 * 16 15 14 18 18 H 1.07997 * 120.00072 * 180.02562 * 17 16 15 19 19 C 1.38820 * 119.99834 * 0.02562 * 17 16 15 20 20 N 1.31621 * 119.99530 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00021 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46975 * 60.00462 * 21 19 17 23 23 H 1.48504 * 109.47392 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47245 * 300.00268 * 21 19 17 25 25 C 1.48180 * 109.28109 * 344.86052 * 16 15 14 26 26 H 1.08998 * 109.74288 * 237.27470 * 25 16 15 27 27 C 1.43941 * 117.13632 * 184.86369 * 9 7 6 28 28 C 1.41286 * 107.17194 * 0.02562 * 6 5 4 29 29 C 1.50701 * 125.99015 * 179.97438 * 28 6 5 30 30 N 1.30454 * 108.02231 * 359.73783 * 28 6 5 31 31 H 1.09000 * 109.47164 * 60.00691 * 1 2 3 32 32 H 1.08997 * 109.47427 * 299.99968 * 1 2 3 33 33 H 1.08999 * 109.46764 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.47141 * 119.99665 * 2 1 3 35 35 H 1.08997 * 109.47427 * 240.00032 * 2 1 3 36 36 H 1.09001 * 109.47070 * 300.00221 * 3 2 1 37 37 H 1.08997 * 109.46920 * 59.99722 * 3 2 1 38 38 H 1.08004 * 126.29282 * 359.97438 * 5 4 3 39 39 H 1.08998 * 108.75102 * 269.22256 * 10 9 7 40 40 H 1.08999 * 108.74427 * 27.33865 * 10 9 7 41 41 H 1.09004 * 108.17123 * 153.78143 * 11 10 9 42 42 H 1.09001 * 108.17542 * 270.58332 * 11 10 9 43 43 H 1.08999 * 110.82491 * 314.52412 * 14 12 11 44 44 H 1.08998 * 110.82594 * 77.88628 * 14 12 11 45 45 H 1.09001 * 110.02432 * 146.88555 * 15 14 12 46 46 H 1.08995 * 110.02188 * 268.24166 * 15 14 12 47 47 H 0.97007 * 119.99366 * 179.97438 * 20 19 17 48 48 H 1.09000 * 108.41755 * 332.78291 * 27 9 7 49 49 H 1.09000 * 108.42145 * 90.03547 * 27 9 7 50 50 H 1.09003 * 109.46820 * 89.99639 * 29 28 6 51 51 H 1.08995 * 109.47258 * 209.99681 * 29 28 6 52 52 H 1.09001 * 109.46990 * 330.00220 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2898 2.0674 -0.8917 6 6 5.6000 1.8189 -0.5350 7 6 6.8043 2.3066 -1.2317 8 8 7.7867 1.5951 -1.3182 9 7 6.8164 3.5409 -1.7727 10 6 5.6607 4.3753 -1.5366 11 6 5.9954 5.8458 -1.4661 12 6 7.1292 6.2979 -2.3138 13 1 7.5284 7.1868 -1.8251 14 6 6.7396 6.7586 -3.7233 15 6 8.0964 6.7461 -4.4628 16 7 8.9302 5.7371 -3.7961 17 6 10.0840 5.2016 -4.3033 18 1 10.6305 4.4619 -3.7371 19 6 10.5511 5.6096 -5.5452 20 7 9.8852 6.5115 -6.2349 21 14 12.1245 4.8787 -6.2375 22 1 11.9673 3.4088 -6.3786 23 1 12.4050 5.4769 -7.5675 24 1 13.2526 5.1697 -5.3165 25 6 8.3266 5.3903 -2.4879 26 1 9.0465 5.5732 -1.6902 27 6 7.9819 3.9143 -2.5304 28 6 5.5708 1.0087 0.6221 29 6 6.7716 0.4867 1.3683 30 7 4.3222 0.7958 0.9344 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 0.8901 35 1 1.8934 -0.5138 -0.8899 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 3.9572 2.6562 -1.7338 39 1 4.9439 4.2172 -2.3423 40 1 5.1987 4.0755 -0.5960 41 1 5.1088 6.4104 -1.7549 42 1 6.2298 6.0919 -0.4304 43 1 6.0423 6.0571 -4.1813 44 1 6.3170 7.7630 -3.6997 45 1 7.9490 6.4764 -5.5085 46 1 8.5683 7.7261 -4.3933 47 1 10.2119 6.7968 -7.1026 48 1 8.8340 3.3496 -2.1521 49 1 7.8213 3.6320 -3.5709 50 1 7.0608 1.2027 2.1376 51 1 6.5236 -0.4669 1.8343 52 1 7.5991 0.3469 0.6726 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042288316.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:33 Heat of formation + Delta-G solvation = 50.604032 kcal Electronic energy + Delta-G solvation = -31527.762379 eV Core-core repulsion = 27528.828617 eV Total energy + Delta-G solvation = -3998.933762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.63085 -41.24363 -39.53952 -36.93216 -36.42124 -34.87603 -33.49081 -33.33864 -32.02446 -30.61696 -30.01698 -29.76002 -26.99660 -26.56803 -25.49632 -24.08923 -23.12427 -22.61298 -22.15231 -21.49921 -20.30059 -19.07128 -18.86446 -18.04411 -17.55624 -16.97604 -16.77638 -16.63563 -16.44163 -16.17318 -15.68397 -15.60489 -15.36603 -15.04303 -14.78342 -14.45689 -14.22831 -14.13520 -13.86414 -13.66183 -13.54418 -13.42874 -13.25071 -13.06933 -13.02564 -12.94628 -12.80099 -12.68561 -12.60355 -12.33433 -12.22385 -12.05356 -11.93299 -11.66230 -11.58965 -11.42677 -11.21790 -11.06714 -10.89182 -10.69083 -10.29042 -9.65309 -9.42282 -8.92636 -7.82273 -5.21672 0.59287 1.12519 1.41766 1.43636 1.46350 1.52528 2.03365 2.31206 2.48348 3.30406 3.32452 3.59097 3.67071 3.72748 3.79701 3.88996 3.93432 3.98664 4.07056 4.17960 4.25332 4.30140 4.32670 4.46162 4.47067 4.53561 4.55372 4.57640 4.65705 4.71790 4.77844 4.81342 4.93104 4.95764 4.96636 5.00067 5.04676 5.12128 5.15547 5.18669 5.19973 5.38743 5.39571 5.49170 5.51709 5.56442 5.71735 5.77088 5.84572 5.94424 6.25710 6.45201 6.61621 7.11685 7.26404 7.77088 8.38450 9.22699 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.002670 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.685574 B =10484.426540 C =11251.477834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.121 3.879 4 N -0.351 5.351 5 C 0.120 3.880 6 C -0.309 4.309 7 C 0.578 3.422 8 O -0.589 6.589 9 N -0.586 5.586 10 C 0.106 3.894 11 C -0.105 4.105 12 C -0.081 4.081 13 H 0.056 0.944 14 C -0.118 4.118 15 C 0.168 3.832 16 N -0.615 5.615 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.061 4.061 20 N -0.945 5.945 21 Si 0.972 3.028 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.161 3.839 26 H 0.026 0.974 27 C 0.130 3.870 28 C 0.112 3.888 29 C -0.079 4.079 30 N -0.316 5.316 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.221 0.779 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.046 0.954 46 H -0.012 1.012 47 H 0.247 0.753 48 H 0.045 0.955 49 H 0.034 0.966 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.148 -5.955 14.725 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.002 3.998 4 N -0.129 5.129 5 C -0.032 4.032 6 C -0.325 4.325 7 C 0.368 3.632 8 O -0.470 6.470 9 N -0.317 5.317 10 C -0.016 4.016 11 C -0.143 4.143 12 C -0.100 4.100 13 H 0.074 0.926 14 C -0.156 4.156 15 C 0.043 3.957 16 N -0.341 5.341 17 C -0.366 4.366 18 H 0.089 0.911 19 C -0.254 4.254 20 N -0.594 5.594 21 Si 0.800 3.200 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.206 1.206 25 C 0.054 3.946 26 H 0.044 0.956 27 C 0.004 3.996 28 C -0.055 4.055 29 C -0.137 4.137 30 N -0.138 5.138 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.152 0.848 37 H 0.122 0.878 38 H 0.237 0.763 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.133 0.867 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.064 0.936 46 H 0.006 0.994 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.052 0.948 50 H 0.105 0.895 51 H 0.105 0.895 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.485 -6.770 15.296 29.654 hybrid contribution 2.377 0.046 -1.419 2.769 sum -22.109 -6.724 13.877 26.955 Atomic orbital electron populations 1.21677 0.92574 1.02809 1.03217 1.21750 0.97852 0.95225 1.02365 1.22375 0.71075 0.99587 1.06723 1.48811 1.07918 1.36951 1.19199 1.23666 0.88908 0.95375 0.95277 1.20019 0.92923 1.14767 1.04741 1.17987 0.86622 0.81369 0.77247 1.90709 1.37386 1.57597 1.61306 1.46638 1.19019 1.14302 1.51727 1.21247 0.86567 0.90818 1.02940 1.20377 0.98662 0.95237 0.99985 1.20055 0.94960 0.97993 0.96990 0.92563 1.22524 0.96841 1.01666 0.94562 1.21223 0.88463 0.89588 0.96385 1.45026 1.25499 1.46808 1.16722 1.19264 0.99190 1.17817 1.00375 0.91123 1.25530 1.02208 0.99909 0.97727 1.70146 1.40658 1.34797 1.13831 0.85256 0.79658 0.77776 0.77299 1.20799 1.21477 1.20553 1.20423 0.94270 0.91951 0.87922 0.95565 1.20873 0.87250 0.97576 0.93862 1.22564 0.93985 0.94736 0.94217 1.20296 0.92122 1.01851 0.99470 1.77069 1.00917 1.20969 1.14894 0.90990 0.91438 0.92226 0.92362 0.92517 0.84756 0.87813 0.76306 0.90205 0.88136 0.86688 0.90782 0.91347 0.89012 0.93594 0.99380 0.94339 0.93695 0.94787 0.89467 0.89545 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.91 71.98 0.71 -0.05 16 2 C -0.13 -1.30 6.11 30.60 0.19 -1.11 16 3 C 0.12 0.95 6.49 86.38 0.56 1.51 16 4 N -0.35 -5.86 3.65 -346.30 -1.26 -7.13 16 5 C 0.12 2.09 9.16 84.28 0.77 2.86 16 6 C -0.31 -8.17 5.06 -20.15 -0.10 -8.27 16 7 C 0.58 19.78 7.35 86.66 0.64 20.42 16 8 O -0.59 -25.54 14.77 -4.05 -0.06 -25.60 16 9 N -0.59 -18.66 3.13 -843.57 -2.64 -21.30 16 10 C 0.11 2.16 4.91 86.10 0.42 2.58 16 11 C -0.10 -2.10 5.55 28.55 0.16 -1.95 16 12 C -0.08 -2.50 2.32 -12.65 -0.03 -2.53 16 13 H 0.06 1.75 8.01 -2.39 -0.02 1.73 16 14 C -0.12 -3.92 6.47 31.22 0.20 -3.72 16 15 C 0.17 8.19 5.53 86.82 0.48 8.67 16 16 N -0.62 -32.04 2.91 -675.67 -1.97 -34.00 16 17 C -0.24 -13.78 9.82 84.04 0.82 -12.96 16 18 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.06 -3.54 5.48 84.86 0.47 -3.08 16 20 N -0.95 -57.15 10.23 21.65 0.22 -56.93 16 21 Si 0.97 47.63 29.55 68.60 2.03 49.66 16 22 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 25 C 0.16 6.75 3.53 43.65 0.15 6.90 16 26 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 27 C 0.13 5.41 5.42 86.41 0.47 5.88 16 28 C 0.11 2.95 7.26 43.51 0.32 3.26 16 29 C -0.08 -1.92 10.26 71.24 0.73 -1.19 16 30 N -0.32 -7.45 12.34 -46.67 -0.58 -8.03 16 31 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.13 0.17 8.06 -2.39 -0.02 0.15 16 37 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.22 2.07 6.42 -2.91 -0.02 2.05 16 39 H 0.08 1.23 7.09 -2.39 -0.02 1.21 16 40 H 0.10 1.65 5.60 -2.39 -0.01 1.64 16 41 H 0.11 1.53 7.94 -2.39 -0.02 1.51 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.05 2.55 6.44 -2.39 -0.02 2.54 16 46 H -0.01 -0.64 8.11 -2.39 -0.02 -0.66 16 47 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 48 H 0.04 2.12 6.91 -2.39 -0.02 2.11 16 49 H 0.03 1.62 7.83 -2.39 -0.02 1.60 16 50 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.07 2.09 6.70 -2.39 -0.02 2.07 16 Total: -1.00 -81.16 401.47 3.61 -77.56 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.90 Total: 8.53 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 6.96 Total: 17.24 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -6.23 Total: -127.38 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.06 Total: -25.60 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -81.16 3.61 -77.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042288316.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.160 kcal (2) G-P(sol) polarization free energy of solvation -81.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds