Wall clock time and date at job start Wed Apr 1 2020 04:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47547 * 2 1 4 4 N 1.46507 * 109.47127 * 120.00447 * 2 1 3 5 5 C 1.35846 * 126.13234 * 299.96858 * 4 2 1 6 6 N 1.30171 * 109.00143 * 179.78571 * 5 4 2 7 7 C 1.35762 * 108.86810 * 0.38594 * 6 5 4 8 8 C 1.47321 * 126.23460 * 179.88257 * 7 6 5 9 9 O 1.21630 * 119.99538 * 179.68867 * 8 7 6 10 10 N 1.34770 * 120.00188 * 359.68956 * 8 7 6 11 11 C 1.46506 * 119.99840 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46690 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.43982 * 299.98066 * 12 11 10 14 14 C 1.53147 * 109.43741 * 59.85432 * 12 11 10 15 15 C 1.55651 * 108.76412 * 65.85699 * 14 12 11 16 16 H 1.08994 * 112.43252 * 187.56169 * 15 14 12 17 17 C 1.54611 * 108.45077 * 312.85114 * 15 14 12 18 18 C 1.53807 * 104.84812 * 87.90249 * 17 15 14 19 19 C 1.54607 * 104.84875 * 359.97438 * 18 17 15 20 20 H 1.09004 * 112.18960 * 146.68125 * 19 18 17 21 21 C 1.53148 * 109.43366 * 180.02562 * 12 11 10 22 22 N 1.48294 * 104.25905 * 25.02943 * 19 18 17 23 23 C 1.36940 * 128.21285 * 138.35523 * 22 19 18 24 24 H 1.08009 * 119.99720 * 344.94662 * 23 22 19 25 25 C 1.38807 * 120.00232 * 164.94376 * 23 22 19 26 26 N 1.31621 * 119.99934 * 351.73930 * 25 23 22 27 27 Si 1.86804 * 119.99821 * 171.74469 * 25 23 22 28 28 H 1.48503 * 109.46812 * 179.97438 * 27 25 23 29 29 H 1.48499 * 109.46908 * 299.99595 * 27 25 23 30 30 H 1.48495 * 109.47159 * 60.00180 * 27 25 23 31 31 C 1.35372 * 126.13523 * 120.00328 * 4 2 1 32 32 H 1.09010 * 109.46976 * 299.99512 * 1 2 3 33 33 H 1.09001 * 109.47231 * 59.99403 * 1 2 3 34 34 H 1.08994 * 109.47295 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47400 * 240.00152 * 2 1 3 36 36 H 1.09001 * 109.47343 * 300.00529 * 3 2 1 37 37 H 1.09009 * 109.46906 * 59.99816 * 3 2 1 38 38 H 1.09000 * 109.47233 * 179.97438 * 3 2 1 39 39 H 1.08000 * 125.49907 * 0.02562 * 5 4 2 40 40 H 0.97003 * 120.00070 * 0.02562 * 10 8 7 41 41 H 1.08991 * 109.46966 * 60.00148 * 11 10 8 42 42 H 1.08995 * 109.47164 * 299.99497 * 11 10 8 43 43 H 1.09008 * 109.56911 * 185.99233 * 14 12 11 44 44 H 1.09002 * 109.56651 * 306.35134 * 14 12 11 45 45 H 1.08996 * 110.37925 * 206.60101 * 17 15 14 46 46 H 1.09000 * 110.38446 * 328.97001 * 17 15 14 47 47 H 1.09000 * 110.42863 * 241.10033 * 18 17 15 48 48 H 1.08989 * 110.23913 * 118.80113 * 18 17 15 49 49 H 1.08995 * 109.57126 * 174.00618 * 21 12 11 50 50 H 1.09001 * 109.67110 * 53.69740 * 21 12 11 51 51 H 0.97004 * 119.99397 * 179.97438 * 26 25 23 52 52 H 1.08004 * 126.57043 * 359.97438 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7686 -0.3366 2.4837 6 7 2.3600 -1.1815 3.2779 7 6 3.0174 -2.1027 2.5280 8 6 3.8150 -3.2317 3.0376 9 8 4.3539 -3.9956 2.2595 10 7 3.9474 -3.4181 4.3657 11 6 4.7401 -4.5411 4.8724 12 6 4.7286 -4.5243 6.4023 13 1 5.1571 -3.5873 6.7580 14 6 3.2862 -4.6463 6.9024 15 6 2.7379 -6.0496 6.5119 16 1 1.6735 -6.1535 6.7221 17 6 3.0812 -6.3135 5.0276 18 6 4.4815 -6.9491 5.0539 19 6 4.8600 -7.0121 6.5516 20 1 5.4712 -7.8838 6.7855 21 6 5.5580 -5.6981 6.9310 22 7 3.5559 -7.0365 7.2572 23 6 3.1911 -7.7953 8.3372 24 1 3.7914 -8.6449 8.6277 25 6 2.0501 -7.4726 9.0587 26 7 1.4097 -6.3499 8.8097 27 14 1.4234 -8.6315 10.3829 28 1 0.1998 -8.0609 11.0015 29 1 1.1040 -9.9491 9.7769 30 1 2.4684 -8.8055 11.4235 31 6 2.7998 -1.7959 1.2167 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.6767 1.9564 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 3.1300 1.4424 0.0005 39 1 1.1721 0.5072 2.7976 40 1 3.5173 -2.8090 4.9862 41 1 5.7661 -4.4519 4.5154 42 1 4.3117 -5.4780 4.5165 43 1 3.2642 -4.5279 7.9858 44 1 2.6720 -3.8756 6.4366 45 1 2.3617 -7.0046 4.5887 46 1 3.0987 -5.3772 4.4698 47 1 5.1919 -6.3272 4.5091 48 1 4.4486 -7.9517 4.6278 49 1 5.6400 -5.6280 8.0156 50 1 6.5532 -5.6736 6.4873 51 1 0.6120 -6.1246 9.3137 52 1 3.1786 -2.3321 0.3591 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048549813.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:22 Heat of formation + Delta-G solvation = 135.616749 kcal Electronic energy + Delta-G solvation = -31748.857569 eV Core-core repulsion = 27753.610235 eV Total energy + Delta-G solvation = -3995.247334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.36671 -40.94676 -38.49817 -36.33781 -34.51458 -32.74841 -31.48923 -31.23361 -30.27327 -29.80206 -29.46626 -27.91724 -26.53052 -24.00007 -23.38901 -23.15449 -22.61221 -20.69327 -20.43258 -19.87037 -19.23968 -18.54549 -17.73059 -16.90211 -16.54695 -15.87258 -15.76642 -15.23050 -14.83594 -14.66231 -14.31383 -14.14446 -14.04653 -13.74826 -13.48746 -13.19308 -12.85892 -12.83877 -12.73508 -12.68160 -12.49821 -11.99599 -11.87807 -11.80713 -11.56262 -11.31301 -11.29564 -11.10265 -10.75206 -10.62947 -10.47112 -10.32446 -10.11451 -9.93816 -9.84624 -9.57888 -9.41854 -9.31139 -9.23265 -9.09788 -8.72732 -8.47936 -7.94833 -6.69144 -5.67482 -3.02013 1.59461 2.35715 2.41638 3.44054 3.49043 3.49640 3.68341 3.78930 3.98408 4.29119 4.37051 4.42259 4.53021 4.54152 4.90339 5.01632 5.09341 5.15790 5.17489 5.35536 5.38734 5.41975 5.47055 5.53322 5.60313 5.64166 5.73729 5.90084 5.93222 5.94443 6.05229 6.19825 6.24207 6.29110 6.36226 6.40139 6.54278 6.63373 6.71795 6.79049 6.85111 6.86735 6.95663 7.00003 7.07421 7.19179 7.25486 7.64500 7.66835 7.70705 7.86712 8.06262 8.34445 8.63931 9.23082 9.85087 10.65551 11.44465 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.002529 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.015732 B =11066.740761 C =11893.156521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 C -0.164 4.164 4 N -0.454 5.454 5 C 0.184 3.816 6 N -0.460 5.460 7 C -0.057 4.057 8 C 0.595 3.405 9 O -0.556 6.556 10 N -0.703 5.703 11 C 0.008 3.992 12 C -0.087 4.087 13 H 0.050 0.950 14 C -0.109 4.109 15 C 0.183 3.817 16 H 0.110 0.890 17 C -0.171 4.171 18 C -0.158 4.158 19 C 0.148 3.852 20 H 0.065 0.935 21 C -0.119 4.119 22 N -0.586 5.586 23 C -0.220 4.220 24 H 0.073 0.927 25 C -0.006 4.006 26 N -0.912 5.912 27 Si 0.908 3.092 28 H -0.291 1.291 29 H -0.287 1.287 30 H -0.286 1.286 31 C 0.028 3.972 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.206 0.794 40 H 0.404 0.596 41 H 0.046 0.954 42 H 0.190 0.810 43 H 0.073 0.927 44 H 0.037 0.963 45 H 0.049 0.951 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.054 0.946 49 H 0.065 0.935 50 H 0.044 0.956 51 H 0.252 0.748 52 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 15.965 -18.616 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.222 4.222 4 N -0.137 5.137 5 C -0.100 4.100 6 N -0.178 5.178 7 C -0.186 4.186 8 C 0.381 3.619 9 O -0.435 6.435 10 N -0.352 5.352 11 C -0.111 4.111 12 C -0.106 4.106 13 H 0.068 0.932 14 C -0.149 4.149 15 C 0.076 3.924 16 H 0.127 0.873 17 C -0.210 4.210 18 C -0.197 4.197 19 C 0.040 3.960 20 H 0.083 0.917 21 C -0.159 4.159 22 N -0.307 5.307 23 C -0.349 4.349 24 H 0.091 0.909 25 C -0.203 4.203 26 N -0.558 5.558 27 Si 0.739 3.261 28 H -0.217 1.217 29 H -0.213 1.213 30 H -0.213 1.213 31 C -0.110 4.110 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.222 0.778 40 H 0.240 0.760 41 H 0.064 0.936 42 H 0.205 0.795 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.107 0.893 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.063 0.937 51 H 0.062 0.938 52 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.405 15.440 -18.135 23.821 hybrid contribution -0.484 0.101 0.289 0.573 sum -0.079 15.541 -17.845 23.664 Atomic orbital electron populations 1.22194 0.92830 1.03621 1.03586 1.21553 0.95780 0.94133 0.86264 1.22190 1.02336 0.94034 1.03593 1.45630 1.37882 1.21993 1.08158 1.24995 1.04182 1.02066 0.78708 1.70660 1.10654 1.03925 1.32589 1.20724 1.07071 1.00335 0.90449 1.16883 0.79654 0.82714 0.82670 1.90762 1.49505 1.46418 1.56810 1.46098 1.51771 1.31081 1.06279 1.25042 0.95591 0.94685 0.95797 1.21259 0.98616 0.97851 0.92864 0.93182 1.22371 0.92249 0.98710 1.01561 1.21874 0.98198 0.86985 0.85306 0.87259 1.23399 0.95708 1.00388 1.01483 1.23244 0.97473 1.00034 0.98918 1.21522 0.89269 0.94656 0.90519 0.91700 1.22075 0.96563 0.96394 1.00908 1.45175 1.06830 1.46313 1.32338 1.18939 1.07900 1.05111 1.02945 0.90942 1.24818 0.99676 0.96986 0.98833 1.69858 1.20441 1.22312 1.43194 0.86260 0.78079 0.80166 0.81577 1.21739 1.21336 1.21266 1.22572 0.97910 0.90798 0.99753 0.91377 0.90274 0.91428 0.87918 0.90270 0.91405 0.91567 0.77755 0.76038 0.93596 0.79493 0.90804 0.94398 0.93197 0.89066 0.89322 0.92702 0.91654 0.93700 0.93776 0.79760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.24 37.15 0.34 -0.30 16 2 C 0.13 0.59 3.57 -67.93 -0.24 0.35 16 3 C -0.16 -0.58 9.24 37.16 0.34 -0.23 16 4 N -0.45 -3.89 2.59 -111.25 -0.29 -4.18 16 5 C 0.18 1.83 11.53 -89.91 -1.04 0.79 16 6 N -0.46 -6.40 11.01 -11.03 -0.12 -6.52 16 7 C -0.06 -0.83 6.98 -83.09 -0.58 -1.41 16 8 C 0.60 10.29 7.57 -12.57 -0.10 10.20 16 9 O -0.56 -10.77 16.88 5.25 0.09 -10.69 16 10 N -0.70 -11.94 4.42 -61.42 -0.27 -12.21 16 11 C 0.01 0.14 2.71 -4.04 -0.01 0.13 16 12 C -0.09 -1.62 2.77 -90.47 -0.25 -1.87 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.11 -2.35 5.27 -25.24 -0.13 -2.49 16 15 C 0.18 4.32 3.23 -64.70 -0.21 4.11 16 16 H 0.11 2.97 6.29 -51.93 -0.33 2.64 16 17 C -0.17 -3.50 5.72 -25.46 -0.15 -3.65 16 18 C -0.16 -3.00 5.72 -25.47 -0.15 -3.14 16 19 C 0.15 3.09 4.27 -65.82 -0.28 2.81 16 20 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 21 C -0.12 -2.27 5.37 -26.37 -0.14 -2.42 16 22 N -0.59 -14.60 2.79 -151.71 -0.42 -15.03 16 23 C -0.22 -6.06 10.38 -15.06 -0.16 -6.22 16 24 H 0.07 1.95 7.84 -52.48 -0.41 1.53 16 25 C -0.01 -0.18 5.43 -17.43 -0.09 -0.27 16 26 N -0.91 -26.05 10.59 55.49 0.59 -25.46 16 27 Si 0.91 22.06 29.56 -169.99 -5.03 17.03 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 31 C 0.03 0.32 11.22 -16.64 -0.19 0.14 16 32 H 0.07 0.26 7.94 -51.92 -0.41 -0.15 16 33 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.38 8.07 -51.93 -0.42 -0.03 16 36 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.07 0.23 7.94 -51.92 -0.41 -0.18 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.21 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.40 6.73 7.02 -40.82 -0.29 6.45 16 41 H 0.05 0.80 8.02 -51.93 -0.42 0.39 16 42 H 0.19 3.48 1.11 -160.49 -0.18 3.31 16 43 H 0.07 1.84 8.05 -51.92 -0.42 1.42 16 44 H 0.04 0.77 6.70 -51.93 -0.35 0.42 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.09 1.79 4.08 -51.93 -0.21 1.58 16 47 H 0.09 1.56 4.90 -51.93 -0.25 1.30 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 50 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 52 H 0.19 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 393.15 15.07 5.92 5.92 Total: -1.00 -32.78 393.15 -10.85 -43.63 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -8.30 Total: 10.96 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.02 Total: -3.47 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.52 Total: -63.39 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.78 -10.85 -43.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048549813.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.250 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds