Wall clock time and date at job start Wed Apr 1 2020 04:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47547 * 2 1 4 4 N 1.46507 * 109.47127 * 120.00447 * 2 1 3 5 5 C 1.35846 * 126.13234 * 299.96858 * 4 2 1 6 6 N 1.30171 * 109.00143 * 179.78571 * 5 4 2 7 7 C 1.35762 * 108.86810 * 0.38594 * 6 5 4 8 8 C 1.47321 * 126.23460 * 179.88257 * 7 6 5 9 9 O 1.21630 * 119.99538 * 179.68867 * 8 7 6 10 10 N 1.34770 * 120.00188 * 359.68956 * 8 7 6 11 11 C 1.46506 * 119.99840 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46690 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.43982 * 299.98066 * 12 11 10 14 14 C 1.53147 * 109.43741 * 59.85432 * 12 11 10 15 15 C 1.55651 * 108.76412 * 65.85699 * 14 12 11 16 16 H 1.08994 * 112.43252 * 187.56169 * 15 14 12 17 17 C 1.54611 * 108.45077 * 312.85114 * 15 14 12 18 18 C 1.53807 * 104.84812 * 87.90249 * 17 15 14 19 19 C 1.54607 * 104.84875 * 359.97438 * 18 17 15 20 20 H 1.09004 * 112.18960 * 146.68125 * 19 18 17 21 21 C 1.53148 * 109.43366 * 180.02562 * 12 11 10 22 22 N 1.48294 * 104.25905 * 25.02943 * 19 18 17 23 23 C 1.36940 * 128.21285 * 138.35523 * 22 19 18 24 24 H 1.08009 * 119.99720 * 344.94662 * 23 22 19 25 25 C 1.38807 * 120.00232 * 164.94376 * 23 22 19 26 26 N 1.31621 * 119.99934 * 351.73930 * 25 23 22 27 27 Si 1.86804 * 119.99821 * 171.74469 * 25 23 22 28 28 H 1.48503 * 109.46812 * 179.97438 * 27 25 23 29 29 H 1.48499 * 109.46908 * 299.99595 * 27 25 23 30 30 H 1.48495 * 109.47159 * 60.00180 * 27 25 23 31 31 C 1.35372 * 126.13523 * 120.00328 * 4 2 1 32 32 H 1.09010 * 109.46976 * 299.99512 * 1 2 3 33 33 H 1.09001 * 109.47231 * 59.99403 * 1 2 3 34 34 H 1.08994 * 109.47295 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47400 * 240.00152 * 2 1 3 36 36 H 1.09001 * 109.47343 * 300.00529 * 3 2 1 37 37 H 1.09009 * 109.46906 * 59.99816 * 3 2 1 38 38 H 1.09000 * 109.47233 * 179.97438 * 3 2 1 39 39 H 1.08000 * 125.49907 * 0.02562 * 5 4 2 40 40 H 0.97003 * 120.00070 * 0.02562 * 10 8 7 41 41 H 1.08991 * 109.46966 * 60.00148 * 11 10 8 42 42 H 1.08995 * 109.47164 * 299.99497 * 11 10 8 43 43 H 1.09008 * 109.56911 * 185.99233 * 14 12 11 44 44 H 1.09002 * 109.56651 * 306.35134 * 14 12 11 45 45 H 1.08996 * 110.37925 * 206.60101 * 17 15 14 46 46 H 1.09000 * 110.38446 * 328.97001 * 17 15 14 47 47 H 1.09000 * 110.42863 * 241.10033 * 18 17 15 48 48 H 1.08989 * 110.23913 * 118.80113 * 18 17 15 49 49 H 1.08995 * 109.57126 * 174.00618 * 21 12 11 50 50 H 1.09001 * 109.67110 * 53.69740 * 21 12 11 51 51 H 0.97004 * 119.99397 * 179.97438 * 26 25 23 52 52 H 1.08004 * 126.57043 * 359.97438 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7686 -0.3366 2.4837 6 7 2.3600 -1.1815 3.2779 7 6 3.0174 -2.1027 2.5280 8 6 3.8150 -3.2317 3.0376 9 8 4.3539 -3.9956 2.2595 10 7 3.9474 -3.4181 4.3657 11 6 4.7401 -4.5411 4.8724 12 6 4.7286 -4.5243 6.4023 13 1 5.1571 -3.5873 6.7580 14 6 3.2862 -4.6463 6.9024 15 6 2.7379 -6.0496 6.5119 16 1 1.6735 -6.1535 6.7221 17 6 3.0812 -6.3135 5.0276 18 6 4.4815 -6.9491 5.0539 19 6 4.8600 -7.0121 6.5516 20 1 5.4712 -7.8838 6.7855 21 6 5.5580 -5.6981 6.9310 22 7 3.5559 -7.0365 7.2572 23 6 3.1911 -7.7953 8.3372 24 1 3.7914 -8.6449 8.6277 25 6 2.0501 -7.4726 9.0587 26 7 1.4097 -6.3499 8.8097 27 14 1.4234 -8.6315 10.3829 28 1 0.1998 -8.0609 11.0015 29 1 1.1040 -9.9491 9.7769 30 1 2.4684 -8.8055 11.4235 31 6 2.7998 -1.7959 1.2167 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.6767 1.9564 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 3.1300 1.4424 0.0005 39 1 1.1721 0.5072 2.7976 40 1 3.5173 -2.8090 4.9862 41 1 5.7661 -4.4519 4.5154 42 1 4.3117 -5.4780 4.5165 43 1 3.2642 -4.5279 7.9858 44 1 2.6720 -3.8756 6.4366 45 1 2.3617 -7.0046 4.5887 46 1 3.0987 -5.3772 4.4698 47 1 5.1919 -6.3272 4.5091 48 1 4.4486 -7.9517 4.6278 49 1 5.6400 -5.6280 8.0156 50 1 6.5532 -5.6736 6.4873 51 1 0.6120 -6.1246 9.3137 52 1 3.1786 -2.3321 0.3591 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048549813.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:21 Heat of formation + Delta-G solvation = 117.109719 kcal Electronic energy + Delta-G solvation = -31749.660094 eV Core-core repulsion = 27753.610235 eV Total energy + Delta-G solvation = -3996.049859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.20372 -42.53193 -39.84811 -36.89236 -36.12272 -34.54822 -32.97000 -32.20659 -31.81837 -31.56398 -30.55623 -28.19057 -28.18223 -25.65330 -24.83143 -24.00893 -23.91776 -22.06075 -21.47857 -21.18303 -20.89045 -20.13101 -18.75566 -18.48392 -17.66571 -17.24206 -16.67593 -16.64994 -16.35851 -15.82349 -15.54357 -15.10779 -14.94864 -14.78864 -14.73380 -14.49441 -14.37318 -14.18146 -13.87874 -13.68705 -13.27304 -13.15282 -13.10382 -13.09881 -12.97277 -12.89067 -12.60421 -12.42428 -12.36168 -12.31461 -12.14257 -11.99915 -11.45730 -11.26158 -11.19042 -11.03660 -10.96589 -10.92500 -10.76371 -10.71467 -10.41702 -9.70191 -9.33863 -8.68233 -7.77954 -5.12918 0.63708 1.47789 1.49871 1.50015 1.55921 1.69656 2.46140 2.53800 2.62634 3.37703 3.49005 3.61490 3.63518 3.86186 3.96236 3.96710 4.02310 4.03550 4.13162 4.22133 4.29961 4.31388 4.43356 4.48471 4.56506 4.64472 4.67754 4.69339 4.75562 4.81018 4.84435 4.87125 4.93588 5.00415 5.06683 5.08531 5.18144 5.20304 5.26685 5.26976 5.32468 5.40908 5.51037 5.52896 5.56631 5.58446 5.65492 5.83444 5.90783 6.16000 6.32931 6.60645 6.93638 7.14498 7.34315 7.81489 8.63229 9.32382 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.002529 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.015732 B =11066.740761 C =11893.156521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 C -0.160 4.160 4 N -0.443 5.443 5 C 0.194 3.806 6 N -0.499 5.499 7 C -0.098 4.098 8 C 0.593 3.407 9 O -0.583 6.583 10 N -0.704 5.704 11 C 0.017 3.983 12 C -0.077 4.077 13 H 0.063 0.937 14 C -0.096 4.096 15 C 0.178 3.822 16 H 0.066 0.934 17 C -0.162 4.162 18 C -0.147 4.147 19 C 0.140 3.860 20 H 0.071 0.929 21 C -0.114 4.114 22 N -0.607 5.607 23 C -0.231 4.231 24 H 0.074 0.926 25 C -0.061 4.061 26 N -0.935 5.935 27 Si 0.970 3.030 28 H -0.297 1.297 29 H -0.283 1.283 30 H -0.280 1.280 31 C 0.042 3.958 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.051 0.949 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.240 0.760 40 H 0.405 0.595 41 H 0.057 0.943 42 H 0.181 0.819 43 H 0.033 0.967 44 H 0.043 0.957 45 H 0.041 0.959 46 H 0.102 0.898 47 H 0.113 0.887 48 H 0.063 0.937 49 H 0.043 0.957 50 H 0.081 0.919 51 H 0.244 0.756 52 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 17.345 -20.818 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 C -0.217 4.217 4 N -0.124 5.124 5 C -0.091 4.091 6 N -0.218 5.218 7 C -0.227 4.227 8 C 0.380 3.620 9 O -0.464 6.464 10 N -0.353 5.353 11 C -0.102 4.102 12 C -0.096 4.096 13 H 0.082 0.918 14 C -0.135 4.135 15 C 0.072 3.928 16 H 0.084 0.916 17 C -0.200 4.200 18 C -0.185 4.185 19 C 0.034 3.966 20 H 0.089 0.911 21 C -0.154 4.154 22 N -0.329 5.329 23 C -0.361 4.361 24 H 0.092 0.908 25 C -0.255 4.255 26 N -0.583 5.583 27 Si 0.800 3.200 28 H -0.223 1.223 29 H -0.209 1.209 30 H -0.206 1.206 31 C -0.100 4.100 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.256 0.744 40 H 0.240 0.760 41 H 0.075 0.925 42 H 0.196 0.804 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.119 0.881 47 H 0.130 0.870 48 H 0.082 0.918 49 H 0.062 0.938 50 H 0.099 0.901 51 H 0.053 0.947 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.021 16.837 -20.363 26.442 hybrid contribution -0.722 -0.245 0.888 1.171 sum 0.299 16.592 -19.475 25.586 Atomic orbital electron populations 1.22194 0.91890 1.02972 1.04854 1.21924 0.96430 0.94711 0.85024 1.22183 1.01572 0.93110 1.04857 1.45901 1.36472 1.20964 1.09074 1.25626 1.02873 1.01711 0.78845 1.70576 1.12109 1.04987 1.34130 1.20532 1.09220 1.01018 0.91886 1.17248 0.79362 0.83078 0.82275 1.90726 1.50831 1.47646 1.57235 1.46055 1.51822 1.30886 1.06543 1.24784 0.96239 0.94689 0.94502 1.21145 0.96274 0.98432 0.93732 0.91839 1.22119 0.94661 0.97759 0.98975 1.21741 0.95955 0.87915 0.87226 0.91616 1.23320 0.96711 1.00903 0.99054 1.23180 0.96648 1.00901 0.97733 1.21774 0.87839 0.95849 0.91154 0.91104 1.21994 0.98214 0.95302 0.99848 1.45375 1.08950 1.46348 1.32194 1.19260 1.07912 1.05411 1.03489 0.90795 1.25550 1.00246 0.98502 1.01162 1.70068 1.20450 1.23740 1.44023 0.85282 0.77186 0.78316 0.79261 1.22326 1.20920 1.20573 1.22788 0.97079 0.91079 0.99014 0.91157 0.88024 0.92988 0.86596 0.88080 0.91124 0.92705 0.74408 0.75970 0.92471 0.80384 0.94804 0.93875 0.93971 0.88061 0.86989 0.91812 0.93773 0.90093 0.94651 0.78287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 9.24 71.98 0.67 -0.12 16 2 C 0.12 0.79 3.57 44.99 0.16 0.95 16 3 C -0.16 -0.62 9.24 71.98 0.67 0.04 16 4 N -0.44 -6.65 2.59 -505.87 -1.31 -7.96 16 5 C 0.19 3.49 11.53 180.10 2.08 5.56 16 6 N -0.50 -13.56 11.01 -188.82 -2.08 -15.64 16 7 C -0.10 -2.86 6.98 40.50 0.28 -2.57 16 8 C 0.59 20.25 7.57 86.63 0.66 20.91 16 9 O -0.58 -22.19 16.88 -4.13 -0.07 -22.25 16 10 N -0.70 -23.56 4.42 -466.47 -2.06 -25.62 16 11 C 0.02 0.59 2.71 86.38 0.23 0.82 16 12 C -0.08 -2.81 2.77 -10.69 -0.03 -2.84 16 13 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 14 C -0.10 -4.24 5.27 31.56 0.17 -4.07 16 15 C 0.18 8.68 3.23 46.11 0.15 8.83 16 16 H 0.07 3.78 6.29 -2.39 -0.02 3.76 16 17 C -0.16 -6.62 5.72 31.41 0.18 -6.44 16 18 C -0.15 -5.33 5.72 31.41 0.18 -5.15 16 19 C 0.14 5.74 4.27 45.38 0.19 5.93 16 20 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 21 C -0.11 -4.19 5.37 30.83 0.17 -4.02 16 22 N -0.61 -30.87 2.79 -633.90 -1.77 -32.63 16 23 C -0.23 -13.00 10.38 84.03 0.87 -12.13 16 24 H 0.07 4.02 7.84 -2.91 -0.02 4.00 16 25 C -0.06 -3.46 5.43 84.86 0.46 -3.00 16 26 N -0.93 -55.80 10.59 21.65 0.23 -55.57 16 27 Si 0.97 46.49 29.56 68.60 2.03 48.52 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 30 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 31 C 0.04 0.89 11.22 83.72 0.94 1.83 16 32 H 0.07 0.33 7.94 -2.38 -0.02 0.31 16 33 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.12 0.50 8.07 -2.39 -0.02 0.48 16 36 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.07 0.26 7.94 -2.38 -0.02 0.24 16 38 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.24 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.40 13.50 7.02 -92.71 -0.65 12.85 16 41 H 0.06 1.85 8.02 -2.39 -0.02 1.83 16 42 H 0.18 6.38 1.11 -104.36 -0.12 6.26 16 43 H 0.03 1.75 8.05 -2.38 -0.02 1.73 16 44 H 0.04 1.81 6.70 -2.39 -0.02 1.80 16 45 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 46 H 0.10 3.97 4.08 -2.39 -0.01 3.96 16 47 H 0.11 3.62 4.90 -2.39 -0.01 3.61 16 48 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 51 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 52 H 0.20 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -74.19 393.15 3.16 -71.04 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.17 Total: 35.58 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 8.02 Total: 4.53 kcal Atomic # 7 Polarization: -130.43 SS G_CDS: -6.99 Total: -137.42 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.07 Total: -22.25 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -74.19 3.16 -71.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048549813.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.147 kcal (2) G-P(sol) polarization free energy of solvation -74.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds