Wall clock time and date at job start Wed Apr 1 2020 04:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47064 * 2 1 4 4 H 1.08995 * 109.47434 * 305.00600 * 3 2 1 5 5 C 1.52999 * 109.46608 * 65.00565 * 3 2 1 6 6 N 1.46500 * 109.47115 * 185.00111 * 3 2 1 7 7 N 1.28470 * 124.88141 * 299.70264 * 6 3 2 8 8 C 1.31818 * 110.06900 * 179.88320 * 7 6 3 9 9 C 1.47712 * 126.51674 * 180.13037 * 8 7 6 10 10 O 1.21575 * 119.99604 * 180.28490 * 9 8 7 11 11 N 1.34775 * 119.99890 * 0.28058 * 9 8 7 12 12 C 1.46673 * 125.33392 * 180.02562 * 11 9 8 13 13 C 1.53735 * 107.93812 * 180.54605 * 12 11 9 14 14 H 1.09006 * 112.55436 * 139.72345 * 13 12 11 15 15 C 1.53690 * 109.33960 * 266.25406 * 13 12 11 16 16 N 1.46633 * 108.00818 * 127.56124 * 15 13 12 17 17 C 1.36943 * 125.33049 * 180.81150 * 16 15 13 18 18 H 1.07993 * 119.99913 * 174.00822 * 17 16 15 19 19 C 1.38813 * 119.99637 * 354.01661 * 17 16 15 20 20 N 1.31616 * 120.00325 * 6.93485 * 19 17 16 21 21 Si 1.86801 * 119.99597 * 186.94311 * 19 17 16 22 22 H 1.48493 * 109.47572 * 94.98040 * 21 19 17 23 23 H 1.48508 * 109.46625 * 214.98120 * 21 19 17 24 24 H 1.48495 * 109.47205 * 334.97688 * 21 19 17 25 25 C 1.46746 * 109.34263 * 0.83372 * 16 15 13 26 26 C 1.53927 * 106.72053 * 341.66060 * 25 16 15 27 27 H 1.08997 * 113.01310 * 150.83208 * 26 25 16 28 28 C 1.46776 * 125.34175 * 359.69873 * 11 9 8 29 29 C 1.41503 * 106.96122 * 0.36510 * 8 7 6 30 30 C 1.35027 * 124.88507 * 120.00058 * 6 3 2 31 31 C 1.50703 * 126.38526 * 359.97438 * 30 6 3 32 32 H 1.08992 * 109.47135 * 59.99584 * 1 2 3 33 33 H 1.09002 * 109.47005 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46597 * 299.99259 * 1 2 3 35 35 H 1.08999 * 109.46866 * 240.00283 * 2 1 3 36 36 H 1.09002 * 109.47172 * 120.00448 * 2 1 3 37 37 H 1.09004 * 109.47181 * 299.99334 * 5 3 2 38 38 H 1.08995 * 109.47720 * 59.99888 * 5 3 2 39 39 H 1.09002 * 109.46902 * 179.97438 * 5 3 2 40 40 H 1.08992 * 109.77521 * 300.16854 * 12 11 9 41 41 H 1.08997 * 109.77037 * 60.93105 * 12 11 9 42 42 H 1.09005 * 109.75589 * 247.19804 * 15 13 12 43 43 H 1.08997 * 109.76269 * 7.91248 * 15 13 12 44 44 H 0.96998 * 120.00040 * 180.02562 * 20 19 17 45 45 H 1.08998 * 110.00656 * 222.34444 * 25 16 15 46 46 H 1.09003 * 110.01042 * 100.97399 * 25 16 15 47 47 H 1.08999 * 110.02820 * 280.77712 * 28 11 9 48 48 H 1.09005 * 110.02546 * 42.18511 * 28 11 9 49 49 H 1.07998 * 127.24171 * 179.77427 * 29 8 7 50 50 H 1.09001 * 109.47166 * 89.99772 * 31 30 6 51 51 H 1.09000 * 109.46911 * 209.99784 * 31 30 6 52 52 H 1.09004 * 109.46851 * 329.99084 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6354 2.1264 1.3074 6 7 3.5001 1.4442 -0.1204 7 7 4.3069 0.8966 0.7160 8 6 5.5530 1.0714 0.3232 9 6 6.7676 0.5893 1.0119 10 8 7.8650 0.8235 0.5441 11 7 6.6591 -0.1102 2.1588 12 6 7.7825 -0.6423 2.9373 13 6 7.2061 -1.3802 4.1567 14 1 7.7383 -2.3061 4.3751 15 6 7.1534 -0.4192 5.3549 16 7 5.7909 -0.4442 5.8964 17 6 5.3481 0.2948 6.9609 18 1 4.3019 0.2831 7.2285 19 6 6.2440 1.0591 7.6958 20 7 7.4902 1.1829 7.2909 21 14 5.6810 1.9116 9.2597 22 1 5.9966 1.0556 10.4313 23 1 6.3831 3.2133 9.3941 24 1 4.2156 2.1438 9.1968 25 6 4.9763 -1.3855 5.1194 26 6 5.7148 -1.6167 3.7888 27 1 5.5277 -2.6026 3.3634 28 6 5.3987 -0.4529 2.8283 29 6 5.5061 1.8133 -0.8808 30 6 4.1916 2.0266 -1.1234 31 6 3.6085 2.7748 -2.2944 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3632 0.5137 0.8901 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 0.5490 2.1251 1.3970 38 1 2.0700 1.5873 2.1492 39 1 1.9991 3.1539 1.3077 40 1 8.3594 -1.3357 2.3256 41 1 8.4213 0.1760 3.2696 42 1 7.8596 -0.7439 6.1191 43 1 7.4019 0.5907 5.0287 44 1 8.1163 1.7167 7.8047 45 1 3.9915 -0.9583 4.9300 46 1 4.8772 -2.3271 5.6595 47 1 5.0272 0.4060 3.3871 48 1 4.6589 -0.7682 2.0924 49 1 6.3430 2.1406 -1.4799 50 1 3.5108 3.8300 -2.0392 51 1 4.2664 2.6691 -3.1571 52 1 2.6267 2.3664 -2.5341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048911847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:49 Heat of formation + Delta-G solvation = 70.199052 kcal Electronic energy + Delta-G solvation = -32000.888100 eV Core-core repulsion = 28002.804041 eV Total energy + Delta-G solvation = -3998.084059 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.74639 -39.86397 -37.96916 -36.66582 -34.82338 -32.97208 -32.17632 -31.81073 -30.28518 -29.33981 -29.18129 -27.16475 -26.02609 -25.33920 -25.02101 -23.74575 -22.21915 -21.16751 -20.29682 -19.96769 -19.21807 -18.64321 -17.08092 -16.85323 -16.30134 -16.19378 -15.71018 -15.42347 -14.99835 -14.57025 -14.26862 -14.16714 -13.96216 -13.63695 -13.39591 -13.27431 -13.11317 -12.91804 -12.79862 -12.65155 -12.48870 -12.41289 -12.14488 -11.96681 -11.92406 -11.83476 -11.44482 -11.34819 -11.30998 -11.16260 -10.85127 -10.80663 -10.56596 -10.33000 -10.04875 -9.98829 -9.78523 -9.71944 -9.56686 -9.05982 -8.89865 -8.54584 -8.14008 -6.78600 -5.70075 -3.02513 1.73323 2.13194 2.33580 3.37647 3.41432 3.46295 3.48794 3.70135 4.07256 4.39221 4.45161 4.51894 4.55403 4.65965 4.75995 4.90527 4.95567 5.00229 5.11926 5.15918 5.21639 5.31532 5.40058 5.42674 5.51685 5.53114 5.53679 5.58587 5.66256 5.67193 5.71104 5.79505 5.85593 5.89787 5.90952 5.96129 6.05984 6.14586 6.30170 6.40489 6.43098 6.54659 6.64827 6.68635 6.74277 6.86190 6.91263 7.59140 7.65380 7.85175 7.87796 8.00180 8.30336 8.52190 9.25023 9.86034 10.50747 11.41786 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010563 B = 0.003428 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.031071 B = 8167.052137 C = 9251.519299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.147 3.853 4 H 0.105 0.895 5 C -0.166 4.166 6 N -0.277 5.277 7 N -0.246 5.246 8 C -0.008 4.008 9 C 0.613 3.387 10 O -0.545 6.545 11 N -0.594 5.594 12 C 0.121 3.879 13 C -0.123 4.123 14 H 0.090 0.910 15 C 0.185 3.815 16 N -0.602 5.602 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.918 5.918 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.147 3.853 26 C -0.114 4.114 27 H 0.087 0.913 28 C 0.122 3.878 29 C -0.180 4.180 30 C 0.003 3.997 31 C -0.082 4.082 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.252 0.748 45 H 0.036 0.964 46 H 0.019 0.981 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.159 0.841 50 H 0.076 0.924 51 H 0.084 0.916 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.144 -1.497 -19.430 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.046 3.954 4 H 0.123 0.877 5 C -0.223 4.223 6 N -0.066 5.066 7 N -0.081 5.081 8 C -0.167 4.167 9 C 0.400 3.600 10 O -0.422 6.422 11 N -0.326 5.326 12 C -0.001 4.001 13 C -0.143 4.143 14 H 0.109 0.891 15 C 0.060 3.940 16 N -0.328 5.328 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.565 5.565 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.021 3.979 26 C -0.134 4.134 27 H 0.106 0.894 28 C -0.001 4.001 29 C -0.208 4.208 30 C -0.121 4.121 31 C -0.140 4.140 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.176 0.824 50 H 0.095 0.905 51 H 0.103 0.897 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.227 -1.647 -18.723 22.983 hybrid contribution 0.242 0.882 0.313 0.967 sum -12.985 -0.765 -18.410 22.541 Atomic orbital electron populations 1.21794 0.94127 1.02671 1.02248 1.21878 0.96764 0.94439 1.04044 1.21669 0.73765 0.98899 1.01024 0.87698 1.22206 1.02481 1.01194 0.96448 1.45735 1.07092 1.37932 1.15858 1.73668 1.00357 1.17333 1.16707 1.21813 0.91124 1.05939 0.97873 1.16493 0.86487 0.77741 0.79325 1.90760 1.26611 1.58553 1.66229 1.48054 1.09334 1.52883 1.22316 1.21850 0.88733 0.97881 0.91637 1.23154 0.94989 0.99703 0.96436 0.89137 1.21110 0.87263 0.95407 0.90217 1.44201 1.06874 1.47108 1.34633 1.19022 0.93267 1.20445 1.03092 0.90459 1.24808 0.95775 1.00471 0.99138 1.69974 1.03619 1.43842 1.39059 0.86142 0.77580 0.78663 0.83641 1.21621 1.21823 1.20700 1.21136 0.94160 0.93399 0.89231 1.22994 0.96453 0.97399 0.96542 0.89436 1.22162 0.85471 0.97807 0.94646 1.21451 0.95636 1.04945 0.98751 1.21345 0.91998 1.03748 0.94999 1.20323 1.00866 0.99122 0.93697 0.92552 0.91811 0.91775 0.91374 0.89881 0.90109 0.90272 0.91866 0.92191 0.90777 0.93485 0.93471 0.93733 0.94593 0.96331 0.90540 0.90467 0.82381 0.90503 0.89694 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.67 37.16 0.36 -0.47 16 2 C -0.13 -1.03 5.58 -26.73 -0.15 -1.18 16 3 C 0.15 1.23 3.02 -67.93 -0.21 1.03 16 4 H 0.11 0.61 6.55 -51.93 -0.34 0.27 16 5 C -0.17 -1.45 9.12 37.16 0.34 -1.11 16 6 N -0.28 -3.31 3.04 -50.67 -0.15 -3.47 16 7 N -0.25 -3.73 8.84 33.42 0.30 -3.43 16 8 C -0.01 -0.13 6.96 -82.76 -0.58 -0.70 16 9 C 0.61 11.94 7.84 -12.39 -0.10 11.84 16 10 O -0.54 -11.81 17.23 5.30 0.09 -11.72 16 11 N -0.59 -11.25 3.31 -173.31 -0.57 -11.82 16 12 C 0.12 2.26 6.23 -3.57 -0.02 2.24 16 13 C -0.12 -2.32 4.02 -88.60 -0.36 -2.68 16 14 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 15 C 0.18 4.49 4.76 -3.61 -0.02 4.47 16 16 N -0.60 -15.21 3.37 -171.94 -0.58 -15.79 16 17 C -0.23 -6.39 10.24 -15.06 -0.15 -6.54 16 18 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 19 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 20 N -0.92 -27.17 10.30 55.49 0.57 -26.60 16 21 Si 0.91 22.23 29.56 -169.99 -5.02 17.20 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.15 2.98 6.37 -3.42 -0.02 2.96 16 26 C -0.11 -1.98 4.19 -88.24 -0.37 -2.35 16 27 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 28 C 0.12 2.17 5.20 -3.28 -0.02 2.15 16 29 C -0.18 -2.56 10.73 -39.36 -0.42 -2.98 16 30 C 0.00 0.03 6.92 -82.21 -0.57 -0.54 16 31 C -0.08 -0.55 9.92 36.01 0.36 -0.19 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.51 6.57 -51.93 -0.34 0.17 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.51 7.44 -51.93 -0.39 1.13 16 42 H 0.05 1.27 7.32 -51.93 -0.38 0.89 16 43 H 0.05 1.30 6.67 -51.93 -0.35 0.95 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.04 0.71 7.94 -51.93 -0.41 0.29 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 1.59 7.72 -51.93 -0.40 1.18 16 48 H 0.08 1.26 6.49 -51.93 -0.34 0.92 16 49 H 0.16 2.07 8.06 -52.49 -0.42 1.64 16 50 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 51 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.07 0.33 7.03 -51.93 -0.36 -0.03 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -34.07 405.39 -9.97 -44.05 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -8.69 Total: -0.23 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -2.02 Total: 5.70 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.44 Total: -61.10 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.07 -9.97 -44.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048911847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.244 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds