Wall clock time and date at job start Wed Apr 1 2020 04:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47064 * 2 1 4 4 H 1.08995 * 109.47434 * 305.00600 * 3 2 1 5 5 C 1.52999 * 109.46608 * 65.00565 * 3 2 1 6 6 N 1.46500 * 109.47115 * 185.00111 * 3 2 1 7 7 N 1.28470 * 124.88141 * 299.70264 * 6 3 2 8 8 C 1.31818 * 110.06900 * 179.88320 * 7 6 3 9 9 C 1.47712 * 126.51674 * 180.13037 * 8 7 6 10 10 O 1.21575 * 119.99604 * 180.28490 * 9 8 7 11 11 N 1.34775 * 119.99890 * 0.28058 * 9 8 7 12 12 C 1.46673 * 125.33392 * 180.02562 * 11 9 8 13 13 C 1.53735 * 107.93812 * 180.54605 * 12 11 9 14 14 H 1.09006 * 112.55436 * 139.72345 * 13 12 11 15 15 C 1.53690 * 109.33960 * 266.25406 * 13 12 11 16 16 N 1.46633 * 108.00818 * 127.56124 * 15 13 12 17 17 C 1.36943 * 125.33049 * 180.81150 * 16 15 13 18 18 H 1.07993 * 119.99913 * 174.00822 * 17 16 15 19 19 C 1.38813 * 119.99637 * 354.01661 * 17 16 15 20 20 N 1.31616 * 120.00325 * 6.93485 * 19 17 16 21 21 Si 1.86801 * 119.99597 * 186.94311 * 19 17 16 22 22 H 1.48493 * 109.47572 * 94.98040 * 21 19 17 23 23 H 1.48508 * 109.46625 * 214.98120 * 21 19 17 24 24 H 1.48495 * 109.47205 * 334.97688 * 21 19 17 25 25 C 1.46746 * 109.34263 * 0.83372 * 16 15 13 26 26 C 1.53927 * 106.72053 * 341.66060 * 25 16 15 27 27 H 1.08997 * 113.01310 * 150.83208 * 26 25 16 28 28 C 1.46776 * 125.34175 * 359.69873 * 11 9 8 29 29 C 1.41503 * 106.96122 * 0.36510 * 8 7 6 30 30 C 1.35027 * 124.88507 * 120.00058 * 6 3 2 31 31 C 1.50703 * 126.38526 * 359.97438 * 30 6 3 32 32 H 1.08992 * 109.47135 * 59.99584 * 1 2 3 33 33 H 1.09002 * 109.47005 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46597 * 299.99259 * 1 2 3 35 35 H 1.08999 * 109.46866 * 240.00283 * 2 1 3 36 36 H 1.09002 * 109.47172 * 120.00448 * 2 1 3 37 37 H 1.09004 * 109.47181 * 299.99334 * 5 3 2 38 38 H 1.08995 * 109.47720 * 59.99888 * 5 3 2 39 39 H 1.09002 * 109.46902 * 179.97438 * 5 3 2 40 40 H 1.08992 * 109.77521 * 300.16854 * 12 11 9 41 41 H 1.08997 * 109.77037 * 60.93105 * 12 11 9 42 42 H 1.09005 * 109.75589 * 247.19804 * 15 13 12 43 43 H 1.08997 * 109.76269 * 7.91248 * 15 13 12 44 44 H 0.96998 * 120.00040 * 180.02562 * 20 19 17 45 45 H 1.08998 * 110.00656 * 222.34444 * 25 16 15 46 46 H 1.09003 * 110.01042 * 100.97399 * 25 16 15 47 47 H 1.08999 * 110.02820 * 280.77712 * 28 11 9 48 48 H 1.09005 * 110.02546 * 42.18511 * 28 11 9 49 49 H 1.07998 * 127.24171 * 179.77427 * 29 8 7 50 50 H 1.09001 * 109.47166 * 89.99772 * 31 30 6 51 51 H 1.09000 * 109.46911 * 209.99784 * 31 30 6 52 52 H 1.09004 * 109.46851 * 329.99084 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6354 2.1264 1.3074 6 7 3.5001 1.4442 -0.1204 7 7 4.3069 0.8966 0.7160 8 6 5.5530 1.0714 0.3232 9 6 6.7676 0.5893 1.0119 10 8 7.8650 0.8235 0.5441 11 7 6.6591 -0.1102 2.1588 12 6 7.7825 -0.6423 2.9373 13 6 7.2061 -1.3802 4.1567 14 1 7.7383 -2.3061 4.3751 15 6 7.1534 -0.4192 5.3549 16 7 5.7909 -0.4442 5.8964 17 6 5.3481 0.2948 6.9609 18 1 4.3019 0.2831 7.2285 19 6 6.2440 1.0591 7.6958 20 7 7.4902 1.1829 7.2909 21 14 5.6810 1.9116 9.2597 22 1 5.9966 1.0556 10.4313 23 1 6.3831 3.2133 9.3941 24 1 4.2156 2.1438 9.1968 25 6 4.9763 -1.3855 5.1194 26 6 5.7148 -1.6167 3.7888 27 1 5.5277 -2.6026 3.3634 28 6 5.3987 -0.4529 2.8283 29 6 5.5061 1.8133 -0.8808 30 6 4.1916 2.0266 -1.1234 31 6 3.6085 2.7748 -2.2944 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3632 0.5137 0.8901 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 0.5490 2.1251 1.3970 38 1 2.0700 1.5873 2.1492 39 1 1.9991 3.1539 1.3077 40 1 8.3594 -1.3357 2.3256 41 1 8.4213 0.1760 3.2696 42 1 7.8596 -0.7439 6.1191 43 1 7.4019 0.5907 5.0287 44 1 8.1163 1.7167 7.8047 45 1 3.9915 -0.9583 4.9300 46 1 4.8772 -2.3271 5.6595 47 1 5.0272 0.4060 3.3871 48 1 4.6589 -0.7682 2.0924 49 1 6.3430 2.1406 -1.4799 50 1 3.5108 3.8300 -2.0392 51 1 4.2664 2.6691 -3.1571 52 1 2.6267 2.3664 -2.5341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048911847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:48 Heat of formation + Delta-G solvation = 49.465525 kcal Electronic energy + Delta-G solvation = -32001.787173 eV Core-core repulsion = 28002.804041 eV Total energy + Delta-G solvation = -3998.983132 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.76876 -41.42187 -39.55361 -37.41475 -36.60231 -34.23911 -33.68853 -32.75884 -31.81910 -31.12597 -30.00020 -28.04832 -27.57089 -27.01955 -26.18332 -25.00200 -23.54880 -22.08592 -21.85197 -21.22414 -20.80398 -19.93379 -18.82271 -18.06101 -17.70368 -17.39713 -17.02281 -16.51402 -16.42647 -16.04723 -15.80472 -15.53323 -15.05570 -14.75132 -14.62324 -14.42528 -14.30088 -14.02052 -13.83862 -13.65812 -13.52736 -13.52355 -13.36868 -13.28269 -13.08770 -13.06898 -12.74720 -12.72254 -12.68713 -12.54371 -12.00174 -11.98605 -11.91436 -11.87552 -11.81955 -11.65608 -11.48719 -11.31156 -11.24822 -10.68241 -10.15389 -9.88079 -9.65955 -8.86823 -7.86095 -5.20279 0.50861 1.10990 1.43889 1.44459 1.46133 1.54723 1.98514 2.31229 2.48996 3.15779 3.31753 3.37082 3.57110 3.66757 3.71423 3.76540 3.83976 3.92348 3.99876 4.03145 4.27753 4.28969 4.37039 4.42711 4.44265 4.50179 4.59182 4.61229 4.63456 4.72667 4.75086 4.78003 4.81908 4.89143 4.92740 5.02116 5.03964 5.06138 5.08206 5.09695 5.12362 5.20893 5.27919 5.38197 5.41209 5.45200 5.47456 5.63424 5.75792 5.94915 6.21028 6.40131 6.82578 7.09570 7.10712 7.80001 8.42468 9.24661 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010563 B = 0.003428 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.031071 B = 8167.052137 C = 9251.519299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.139 3.861 4 H 0.144 0.856 5 C -0.163 4.163 6 N -0.270 5.270 7 N -0.260 5.260 8 C -0.043 4.043 9 C 0.606 3.394 10 O -0.578 6.578 11 N -0.599 5.599 12 C 0.124 3.876 13 C -0.110 4.110 14 H 0.121 0.879 15 C 0.199 3.801 16 N -0.622 5.622 17 C -0.240 4.240 18 H 0.085 0.915 19 C -0.066 4.066 20 N -0.950 5.950 21 Si 0.976 3.024 22 H -0.285 1.285 23 H -0.299 1.299 24 H -0.265 1.265 25 C 0.143 3.857 26 C -0.097 4.097 27 H 0.133 0.867 28 C 0.135 3.865 29 C -0.205 4.205 30 C 0.022 3.978 31 C -0.081 4.081 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.044 0.956 42 H 0.012 0.988 43 H 0.000 1.000 44 H 0.245 0.755 45 H 0.042 0.958 46 H 0.035 0.965 47 H 0.040 0.960 48 H 0.096 0.904 49 H 0.161 0.839 50 H 0.091 0.909 51 H 0.097 0.903 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.627 -2.240 -21.494 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.040 3.960 4 H 0.161 0.839 5 C -0.221 4.221 6 N -0.060 5.060 7 N -0.097 5.097 8 C -0.201 4.201 9 C 0.395 3.605 10 O -0.457 6.457 11 N -0.330 5.330 12 C 0.001 3.999 13 C -0.130 4.130 14 H 0.139 0.861 15 C 0.074 3.926 16 N -0.349 5.349 17 C -0.369 4.369 18 H 0.103 0.897 19 C -0.259 4.259 20 N -0.599 5.599 21 Si 0.804 3.196 22 H -0.212 1.212 23 H -0.226 1.226 24 H -0.190 1.190 25 C 0.018 3.982 26 C -0.116 4.116 27 H 0.151 0.849 28 C 0.013 3.987 29 C -0.233 4.233 30 C -0.103 4.103 31 C -0.139 4.139 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.018 0.982 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.114 0.886 49 H 0.178 0.822 50 H 0.109 0.891 51 H 0.116 0.884 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.762 -2.424 -20.789 26.815 hybrid contribution 1.214 1.164 0.914 1.914 sum -15.549 -1.260 -19.874 25.265 Atomic orbital electron populations 1.21780 0.92045 1.03202 1.03345 1.21830 0.98431 0.93546 1.02836 1.22130 0.71688 0.99926 1.02212 0.83890 1.22196 1.04174 1.00145 0.95539 1.46196 1.08205 1.36449 1.15116 1.73563 1.00086 1.18253 1.17762 1.21612 0.90900 1.08301 0.99318 1.16972 0.87172 0.77126 0.79251 1.90714 1.28084 1.59751 1.67183 1.48164 1.09615 1.52973 1.22287 1.21783 0.88790 0.97343 0.91989 1.23028 0.96832 0.99321 0.93810 0.86113 1.20754 0.86439 0.94264 0.91179 1.44499 1.07880 1.47744 1.34748 1.19446 0.93675 1.20181 1.03564 0.89728 1.25660 0.96000 1.01907 1.02325 1.70220 1.04748 1.44887 1.40086 0.85098 0.77787 0.76992 0.79725 1.21223 1.22645 1.18997 1.21340 0.94075 0.92782 0.90032 1.23059 0.94318 0.99208 0.95026 0.84885 1.22009 0.85400 0.96631 0.94695 1.21656 0.97404 1.05827 0.98406 1.21987 0.90983 1.01958 0.95322 1.20549 1.02248 0.99247 0.91867 0.90543 0.91663 0.91533 0.91475 0.92247 0.87177 0.93384 0.92638 0.89807 0.93735 0.97024 0.98158 0.94604 0.93934 0.94715 0.94177 0.88566 0.82179 0.89076 0.88384 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 71.98 0.70 -0.42 16 2 C -0.13 -1.68 5.58 30.60 0.17 -1.51 16 3 C 0.14 1.95 3.02 44.99 0.14 2.08 16 4 H 0.14 0.96 6.55 -2.39 -0.02 0.94 16 5 C -0.16 -2.57 9.12 71.98 0.66 -1.92 16 6 N -0.27 -6.04 3.04 -314.21 -0.96 -7.00 16 7 N -0.26 -7.90 8.84 -48.17 -0.43 -8.33 16 8 C -0.04 -1.50 6.96 42.46 0.30 -1.21 16 9 C 0.61 24.63 7.84 86.75 0.68 25.31 16 10 O -0.58 -26.31 17.23 -3.95 -0.07 -26.38 16 11 N -0.60 -23.36 3.31 -820.50 -2.72 -26.07 16 12 C 0.12 4.74 6.23 86.59 0.54 5.28 16 13 C -0.11 -4.15 4.02 -9.48 -0.04 -4.19 16 14 H 0.12 3.87 8.14 -2.38 -0.02 3.85 16 15 C 0.20 10.13 4.76 86.59 0.41 10.54 16 16 N -0.62 -32.19 3.37 -697.89 -2.35 -34.54 16 17 C -0.24 -13.59 10.24 84.03 0.86 -12.73 16 18 H 0.08 4.54 7.84 -2.91 -0.02 4.52 16 19 C -0.07 -3.84 5.48 84.86 0.46 -3.38 16 20 N -0.95 -59.21 10.30 21.65 0.22 -58.98 16 21 Si 0.98 46.78 29.56 68.60 2.03 48.81 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.14 5.65 6.37 86.65 0.55 6.20 16 26 C -0.10 -3.21 4.19 -9.25 -0.04 -3.25 16 27 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 28 C 0.14 4.84 5.20 86.73 0.45 5.29 16 29 C -0.20 -5.82 10.73 22.41 0.24 -5.58 16 30 C 0.02 0.46 6.92 41.40 0.29 0.74 16 31 C -0.08 -0.77 9.92 71.24 0.71 -0.06 16 32 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.49 6.56 -2.39 -0.02 0.47 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.11 1.06 6.57 -2.39 -0.02 1.05 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.04 1.96 7.44 -2.39 -0.02 1.94 16 42 H 0.01 0.66 7.32 -2.38 -0.02 0.64 16 43 H 0.00 0.01 6.67 -2.39 -0.02 0.00 16 44 H 0.24 14.92 8.31 -92.71 -0.77 14.14 16 45 H 0.04 1.63 7.94 -2.39 -0.02 1.61 16 46 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.04 1.73 7.72 -2.39 -0.02 1.71 16 48 H 0.10 3.08 6.49 -2.38 -0.02 3.07 16 49 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 50 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.09 0.42 7.03 -2.38 -0.02 0.41 16 Total: -1.00 -80.63 405.39 3.71 -76.92 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.90 Total: 14.35 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 7.07 Total: 21.22 kcal Atomic # 7 Polarization: -128.69 SS G_CDS: -6.23 Total: -134.92 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.07 Total: -26.38 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -80.63 3.71 -76.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048911847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.387 kcal (2) G-P(sol) polarization free energy of solvation -80.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds