Wall clock time and date at job start Wed Apr 1 2020 04:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47323 * 2 1 4 4 H 1.09001 * 109.47188 * 54.54581 * 3 2 1 5 5 C 1.53001 * 109.47227 * 294.54081 * 3 2 1 6 6 N 1.46508 * 109.47201 * 174.54448 * 3 2 1 7 7 N 1.28440 * 125.19112 * 65.55335 * 6 3 2 8 8 C 1.30860 * 110.92700 * 179.97438 * 7 6 3 9 9 C 1.39674 * 107.86149 * 0.02562 * 8 7 6 10 10 C 1.36604 * 125.18605 * 245.25522 * 6 3 2 11 11 C 1.47159 * 126.88496 * 0.02562 * 10 6 3 12 12 O 1.21630 * 120.00123 * 16.87226 * 11 10 6 13 13 N 1.34781 * 120.00057 * 196.87110 * 11 10 6 14 14 C 1.45736 * 117.75596 * 6.14988 * 13 11 10 15 15 C 1.53054 * 109.55249 * 141.08537 * 14 13 11 16 16 C 1.52940 * 108.49528 * 53.80280 * 15 14 13 17 17 C 1.52936 * 109.79200 * 294.00558 * 16 15 14 18 18 H 1.08998 * 110.51055 * 292.90103 * 17 16 15 19 19 C 1.44189 * 117.76171 * 185.89518 * 13 11 10 20 20 H 1.08995 * 109.22419 * 333.40132 * 19 13 11 21 21 C 1.54563 * 111.48261 * 93.66128 * 19 13 11 22 22 C 1.54058 * 103.66952 * 153.28416 * 21 19 13 23 23 N 1.46877 * 107.70959 * 342.84578 * 22 21 19 24 24 C 1.36942 * 125.58487 * 177.04938 * 23 22 21 25 25 H 1.07990 * 119.99933 * 179.97438 * 24 23 22 26 26 C 1.38814 * 119.99435 * 359.97299 * 24 23 22 27 27 N 1.31614 * 120.00174 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 119.99494 * 179.97438 * 26 24 23 29 29 H 1.48501 * 109.46973 * 60.00087 * 28 26 24 30 30 H 1.48501 * 109.46937 * 179.97438 * 28 26 24 31 31 H 1.48503 * 109.47320 * 299.99837 * 28 26 24 32 32 H 1.08994 * 109.47317 * 185.29469 * 1 2 3 33 33 H 1.09008 * 109.46907 * 305.29999 * 1 2 3 34 34 H 1.09008 * 109.47110 * 65.29155 * 1 2 3 35 35 H 1.08997 * 109.46960 * 239.99485 * 2 1 3 36 36 H 1.09002 * 109.47141 * 119.99984 * 2 1 3 37 37 H 1.09001 * 109.47445 * 300.00342 * 5 3 2 38 38 H 1.09002 * 109.47217 * 60.00184 * 5 3 2 39 39 H 1.08997 * 109.47304 * 179.97438 * 5 3 2 40 40 H 1.07997 * 126.06845 * 179.97438 * 8 7 6 41 41 H 1.08001 * 127.31881 * 180.02562 * 9 8 7 42 42 H 1.09002 * 109.45676 * 261.11056 * 14 13 11 43 43 H 1.08997 * 109.46121 * 21.07997 * 14 13 11 44 44 H 1.09006 * 109.63301 * 173.50140 * 15 14 13 45 45 H 1.09002 * 109.63583 * 293.89796 * 15 14 13 46 46 H 1.09000 * 109.41903 * 54.10496 * 16 15 14 47 47 H 1.08996 * 109.41836 * 173.91140 * 16 15 14 48 48 H 1.08999 * 110.62571 * 34.73171 * 21 19 13 49 49 H 1.09004 * 110.70963 * 271.88085 * 21 19 13 50 50 H 1.08998 * 109.80747 * 223.29480 * 22 21 19 51 51 H 1.08995 * 109.86400 * 102.43090 * 22 21 19 52 52 H 0.97005 * 119.99760 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5992 1.9837 0.8371 5 6 1.6452 2.1230 -1.3122 6 7 3.4992 1.4445 0.1313 7 7 4.3215 0.9811 -0.7398 8 6 5.5585 1.1260 -0.3384 9 6 5.5329 1.7428 0.9145 10 6 4.1930 1.9448 1.1964 11 6 3.6287 2.5698 2.4033 12 8 2.4536 2.4142 2.6759 13 7 4.4139 3.3145 3.2066 14 6 5.7766 3.5825 2.7647 15 6 6.1585 5.0202 3.1250 16 6 5.9130 5.2272 4.6203 17 6 4.4156 5.1344 4.9170 18 1 3.8839 5.9711 4.4638 19 6 3.8466 3.7962 4.4415 20 1 2.7661 3.8853 4.3294 21 6 4.1480 2.8367 5.6152 22 6 4.1190 3.7543 6.8523 23 7 4.2399 5.1409 6.3831 24 6 4.1971 6.2569 7.1755 25 1 4.2962 7.2372 6.7334 26 6 4.0264 6.1280 8.5470 27 7 3.9061 4.9333 9.0858 28 14 3.9688 7.6504 9.6281 29 1 2.8379 8.5151 9.2054 30 1 3.7790 7.2450 11.0440 31 1 5.2430 8.4011 9.4942 32 1 -0.3633 -1.0232 0.0948 33 1 -0.3633 0.5939 0.8388 34 1 -0.3634 0.4296 -0.9336 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.0861 1.5817 -2.1493 38 1 0.5596 2.1215 -1.4100 39 1 2.0082 3.1508 -1.3120 40 1 6.4423 0.8219 -0.8794 41 1 6.3790 2.0100 1.5302 42 1 6.4605 2.8910 3.2569 43 1 5.8409 3.4499 1.6848 44 1 7.2121 5.1865 2.9004 45 1 5.5473 5.7164 2.5507 46 1 6.4424 4.4591 5.1842 47 1 6.2806 6.2100 4.9153 48 1 5.1323 2.3835 5.4975 49 1 3.3798 2.0671 5.6909 50 1 4.9534 3.5131 7.5108 51 1 3.1777 3.6259 7.3867 52 1 3.7871 4.8433 10.0444 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049504818.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:13 Heat of formation + Delta-G solvation = 84.288914 kcal Electronic energy + Delta-G solvation = -32250.396285 eV Core-core repulsion = 28252.923209 eV Total energy + Delta-G solvation = -3997.473076 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.76733 -40.30560 -37.90951 -36.74531 -35.49690 -32.67137 -32.54988 -31.72358 -30.95763 -29.22536 -28.98129 -28.24897 -25.45062 -24.86007 -24.46992 -22.72480 -22.51832 -21.99129 -21.03863 -20.10428 -19.31191 -18.44952 -17.30365 -16.96614 -16.65225 -16.03648 -15.60841 -15.34979 -14.92860 -14.73983 -14.65783 -14.33824 -14.06671 -13.84802 -13.68528 -13.38808 -13.29066 -13.00974 -12.77948 -12.56600 -12.49954 -12.12284 -12.04299 -11.98384 -11.93809 -11.44141 -11.33050 -11.13210 -11.04325 -10.95966 -10.83098 -10.70541 -10.65711 -10.42051 -10.14506 -10.10043 -9.73777 -9.64563 -9.62009 -9.28319 -8.99408 -8.61439 -8.38483 -6.88671 -5.72849 -3.07796 1.23006 2.23116 2.52474 3.10506 3.16668 3.39551 3.44007 3.45165 4.25153 4.31547 4.46693 4.53985 4.70279 4.87605 4.94321 5.01616 5.08387 5.10161 5.11879 5.23815 5.28464 5.34250 5.39712 5.45854 5.46651 5.53756 5.57960 5.60424 5.65240 5.65598 5.69713 5.75834 5.85376 5.93992 5.98234 6.00191 6.07009 6.19179 6.28246 6.34164 6.39053 6.52520 6.55672 6.67368 6.72028 6.92204 7.04331 7.40103 7.54800 7.61471 7.81358 7.97358 8.15979 8.24076 9.19101 9.78830 10.43454 11.37886 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017952 B = 0.002841 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.383385 B = 9853.214777 C =10680.643434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.134 3.866 4 H 0.131 0.869 5 C -0.160 4.160 6 N -0.250 5.250 7 N -0.277 5.277 8 C -0.009 4.009 9 C -0.203 4.203 10 C -0.030 4.030 11 C 0.578 3.422 12 O -0.541 6.541 13 N -0.566 5.566 14 C 0.085 3.915 15 C -0.132 4.132 16 C -0.132 4.132 17 C 0.163 3.837 18 H 0.055 0.945 19 C 0.136 3.864 20 H 0.096 0.904 21 C -0.151 4.151 22 C 0.179 3.821 23 N -0.595 5.595 24 C -0.229 4.229 25 H 0.078 0.922 26 C -0.005 4.005 27 N -0.920 5.920 28 Si 0.912 3.088 29 H -0.285 1.285 30 H -0.290 1.290 31 H -0.285 1.285 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.184 0.816 41 H 0.173 0.827 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.062 0.938 50 H 0.041 0.959 51 H 0.053 0.947 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 -8.044 -20.509 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.034 3.966 4 H 0.149 0.851 5 C -0.217 4.217 6 N -0.038 5.038 7 N -0.110 5.110 8 C -0.185 4.185 9 C -0.232 4.232 10 C -0.158 4.158 11 C 0.365 3.635 12 O -0.420 6.420 13 N -0.296 5.296 14 C -0.037 4.037 15 C -0.171 4.171 16 C -0.172 4.172 17 C 0.054 3.946 18 H 0.073 0.927 19 C 0.032 3.968 20 H 0.114 0.886 21 C -0.190 4.190 22 C 0.054 3.946 23 N -0.319 5.319 24 C -0.357 4.357 25 H 0.096 0.904 26 C -0.202 4.202 27 N -0.567 5.567 28 Si 0.743 3.257 29 H -0.211 1.211 30 H -0.216 1.216 31 H -0.212 1.212 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.201 0.799 41 H 0.190 0.810 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.059 0.941 51 H 0.071 0.929 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.113 -8.450 -20.934 22.575 hybrid contribution 0.760 0.999 1.384 1.869 sum 0.873 -7.451 -19.549 20.940 Atomic orbital electron populations 1.21773 0.94054 1.02512 1.02432 1.21801 0.96980 0.94411 1.03268 1.22100 0.73011 0.99386 1.02115 0.85107 1.22146 1.02585 1.00877 0.96123 1.45974 1.07407 1.39509 1.10934 1.73098 1.01225 1.18412 1.18238 1.23589 0.94537 1.04029 0.96323 1.22773 0.95300 1.06050 0.99075 1.21483 0.92388 1.08254 0.93708 1.17113 0.85585 0.79121 0.81676 1.90742 1.15686 1.61800 1.73733 1.46756 1.12916 1.49875 1.20042 1.22406 0.82490 0.97774 1.01076 1.21871 1.01286 0.95324 0.98637 1.22139 0.99507 1.02409 0.93136 1.20824 0.93299 0.93457 0.87020 0.92707 1.21235 0.98899 0.95216 0.81499 0.88640 1.23104 1.00515 0.98555 0.96827 1.21058 1.01362 0.81677 0.90454 1.44494 1.85353 1.02763 0.99323 1.18963 1.43365 0.85155 0.88215 0.90440 1.24800 1.01937 0.96830 0.96631 1.69957 1.55730 1.20249 1.10772 0.86198 0.77877 0.81939 0.79713 1.21143 1.21613 1.21177 0.91977 0.91843 0.92196 0.90831 0.91279 0.91031 0.90101 0.92072 0.79868 0.80988 0.91425 0.87957 0.90910 0.91715 0.91893 0.91782 0.92473 0.91932 0.94102 0.92905 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.54 37.16 0.35 -0.86 16 2 C -0.13 -1.27 5.66 -26.73 -0.15 -1.42 16 3 C 0.13 1.53 2.95 -67.93 -0.20 1.33 16 4 H 0.13 1.74 5.62 -51.93 -0.29 1.44 16 5 C -0.16 -1.47 9.06 37.16 0.34 -1.13 16 6 N -0.25 -3.22 3.09 -50.69 -0.16 -3.38 16 7 N -0.28 -3.41 11.52 30.59 0.35 -3.05 16 8 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 9 C -0.20 -2.22 8.56 -38.98 -0.33 -2.55 16 10 C -0.03 -0.40 6.55 -82.06 -0.54 -0.94 16 11 C 0.58 9.14 7.50 -12.64 -0.09 9.05 16 12 O -0.54 -9.89 13.87 5.25 0.07 -9.82 16 13 N -0.57 -8.65 2.79 -168.77 -0.47 -9.12 16 14 C 0.08 1.01 4.63 -4.43 -0.02 0.99 16 15 C -0.13 -1.66 6.10 -26.73 -0.16 -1.83 16 16 C -0.13 -2.23 5.31 -26.80 -0.14 -2.37 16 17 C 0.16 3.23 3.27 -67.33 -0.22 3.01 16 18 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 19 C 0.14 2.50 2.81 -68.34 -0.19 2.31 16 20 H 0.10 1.95 7.00 -51.93 -0.36 1.59 16 21 C -0.15 -2.94 6.46 -25.36 -0.16 -3.10 16 22 C 0.18 4.32 5.39 -3.28 -0.02 4.31 16 23 N -0.59 -14.66 2.94 -163.89 -0.48 -15.14 16 24 C -0.23 -6.19 10.27 -15.06 -0.15 -6.34 16 25 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 26 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 27 N -0.92 -26.66 10.29 55.49 0.57 -26.09 16 28 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 31 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 34 H 0.06 0.40 6.84 -51.92 -0.36 0.05 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.08 0.59 6.70 -51.93 -0.35 0.24 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.17 1.49 5.30 -52.49 -0.28 1.21 16 42 H 0.07 0.75 7.69 -51.93 -0.40 0.35 16 43 H 0.10 1.05 4.31 -51.93 -0.22 0.82 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.04 1.08 7.60 -51.93 -0.39 0.68 16 51 H 0.05 1.43 7.24 -51.93 -0.38 1.05 16 52 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 395.12 15.07 5.95 5.95 Total: -1.00 -31.33 395.12 -9.67 -41.00 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.49 Total: 2.94 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.01 Total: -0.09 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.19 Total: -56.77 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.07 Total: -9.82 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.33 -9.67 -41.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049504818.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.289 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds