Wall clock time and date at job start Wed Apr 1 2020 04:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47323 * 2 1 4 4 H 1.09001 * 109.47188 * 54.54581 * 3 2 1 5 5 C 1.53001 * 109.47227 * 294.54081 * 3 2 1 6 6 N 1.46508 * 109.47201 * 174.54448 * 3 2 1 7 7 N 1.28440 * 125.19112 * 65.55335 * 6 3 2 8 8 C 1.30860 * 110.92700 * 179.97438 * 7 6 3 9 9 C 1.39674 * 107.86149 * 0.02562 * 8 7 6 10 10 C 1.36604 * 125.18605 * 245.25522 * 6 3 2 11 11 C 1.47159 * 126.88496 * 0.02562 * 10 6 3 12 12 O 1.21630 * 120.00123 * 16.87226 * 11 10 6 13 13 N 1.34781 * 120.00057 * 196.87110 * 11 10 6 14 14 C 1.45736 * 117.75596 * 6.14988 * 13 11 10 15 15 C 1.53054 * 109.55249 * 141.08537 * 14 13 11 16 16 C 1.52940 * 108.49528 * 53.80280 * 15 14 13 17 17 C 1.52936 * 109.79200 * 294.00558 * 16 15 14 18 18 H 1.08998 * 110.51055 * 292.90103 * 17 16 15 19 19 C 1.44189 * 117.76171 * 185.89518 * 13 11 10 20 20 H 1.08995 * 109.22419 * 333.40132 * 19 13 11 21 21 C 1.54563 * 111.48261 * 93.66128 * 19 13 11 22 22 C 1.54058 * 103.66952 * 153.28416 * 21 19 13 23 23 N 1.46877 * 107.70959 * 342.84578 * 22 21 19 24 24 C 1.36942 * 125.58487 * 177.04938 * 23 22 21 25 25 H 1.07990 * 119.99933 * 179.97438 * 24 23 22 26 26 C 1.38814 * 119.99435 * 359.97299 * 24 23 22 27 27 N 1.31614 * 120.00174 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 119.99494 * 179.97438 * 26 24 23 29 29 H 1.48501 * 109.46973 * 60.00087 * 28 26 24 30 30 H 1.48501 * 109.46937 * 179.97438 * 28 26 24 31 31 H 1.48503 * 109.47320 * 299.99837 * 28 26 24 32 32 H 1.08994 * 109.47317 * 185.29469 * 1 2 3 33 33 H 1.09008 * 109.46907 * 305.29999 * 1 2 3 34 34 H 1.09008 * 109.47110 * 65.29155 * 1 2 3 35 35 H 1.08997 * 109.46960 * 239.99485 * 2 1 3 36 36 H 1.09002 * 109.47141 * 119.99984 * 2 1 3 37 37 H 1.09001 * 109.47445 * 300.00342 * 5 3 2 38 38 H 1.09002 * 109.47217 * 60.00184 * 5 3 2 39 39 H 1.08997 * 109.47304 * 179.97438 * 5 3 2 40 40 H 1.07997 * 126.06845 * 179.97438 * 8 7 6 41 41 H 1.08001 * 127.31881 * 180.02562 * 9 8 7 42 42 H 1.09002 * 109.45676 * 261.11056 * 14 13 11 43 43 H 1.08997 * 109.46121 * 21.07997 * 14 13 11 44 44 H 1.09006 * 109.63301 * 173.50140 * 15 14 13 45 45 H 1.09002 * 109.63583 * 293.89796 * 15 14 13 46 46 H 1.09000 * 109.41903 * 54.10496 * 16 15 14 47 47 H 1.08996 * 109.41836 * 173.91140 * 16 15 14 48 48 H 1.08999 * 110.62571 * 34.73171 * 21 19 13 49 49 H 1.09004 * 110.70963 * 271.88085 * 21 19 13 50 50 H 1.08998 * 109.80747 * 223.29480 * 22 21 19 51 51 H 1.08995 * 109.86400 * 102.43090 * 22 21 19 52 52 H 0.97005 * 119.99760 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5992 1.9837 0.8371 5 6 1.6452 2.1230 -1.3122 6 7 3.4992 1.4445 0.1313 7 7 4.3215 0.9811 -0.7398 8 6 5.5585 1.1260 -0.3384 9 6 5.5329 1.7428 0.9145 10 6 4.1930 1.9448 1.1964 11 6 3.6287 2.5698 2.4033 12 8 2.4536 2.4142 2.6759 13 7 4.4139 3.3145 3.2066 14 6 5.7766 3.5825 2.7647 15 6 6.1585 5.0202 3.1250 16 6 5.9130 5.2272 4.6203 17 6 4.4156 5.1344 4.9170 18 1 3.8839 5.9711 4.4638 19 6 3.8466 3.7962 4.4415 20 1 2.7661 3.8853 4.3294 21 6 4.1480 2.8367 5.6152 22 6 4.1190 3.7543 6.8523 23 7 4.2399 5.1409 6.3831 24 6 4.1971 6.2569 7.1755 25 1 4.2962 7.2372 6.7334 26 6 4.0264 6.1280 8.5470 27 7 3.9061 4.9333 9.0858 28 14 3.9688 7.6504 9.6281 29 1 2.8379 8.5151 9.2054 30 1 3.7790 7.2450 11.0440 31 1 5.2430 8.4011 9.4942 32 1 -0.3633 -1.0232 0.0948 33 1 -0.3633 0.5939 0.8388 34 1 -0.3634 0.4296 -0.9336 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.0861 1.5817 -2.1493 38 1 0.5596 2.1215 -1.4100 39 1 2.0082 3.1508 -1.3120 40 1 6.4423 0.8219 -0.8794 41 1 6.3790 2.0100 1.5302 42 1 6.4605 2.8910 3.2569 43 1 5.8409 3.4499 1.6848 44 1 7.2121 5.1865 2.9004 45 1 5.5473 5.7164 2.5507 46 1 6.4424 4.4591 5.1842 47 1 6.2806 6.2100 4.9153 48 1 5.1323 2.3835 5.4975 49 1 3.3798 2.0671 5.6909 50 1 4.9534 3.5131 7.5108 51 1 3.1777 3.6259 7.3867 52 1 3.7871 4.8433 10.0444 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049504818.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:12 Heat of formation + Delta-G solvation = 66.591892 kcal Electronic energy + Delta-G solvation = -32251.163686 eV Core-core repulsion = 28252.923209 eV Total energy + Delta-G solvation = -3998.240477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.67660 -41.63146 -39.36533 -37.65914 -36.87010 -34.37989 -33.97817 -32.56931 -32.18949 -30.71939 -30.03424 -29.70310 -26.75401 -26.23903 -25.74047 -23.93463 -23.58170 -23.05411 -22.19637 -21.81550 -20.38245 -19.70566 -18.91981 -18.40122 -17.76683 -17.04302 -16.83409 -16.74041 -16.20750 -16.03305 -15.94152 -15.64102 -15.32615 -15.08283 -14.75549 -14.61328 -14.44216 -14.14108 -14.05305 -13.78838 -13.61683 -13.54324 -13.23759 -13.12479 -12.84174 -12.78157 -12.72060 -12.63809 -12.34970 -12.31882 -12.11123 -12.07746 -11.97435 -11.83796 -11.76019 -11.57859 -11.34214 -11.20544 -10.99562 -10.69312 -10.22301 -9.88422 -9.68064 -8.91611 -7.84104 -5.20868 0.22083 1.27964 1.46217 1.49372 1.55479 1.69352 1.97828 2.04733 2.49889 3.23070 3.34082 3.43222 3.56767 3.74593 3.80908 3.85647 3.94147 3.97537 4.07644 4.12038 4.13627 4.17830 4.33960 4.35767 4.37752 4.52505 4.53179 4.56877 4.61313 4.66614 4.72835 4.77306 4.81952 4.87410 4.89648 4.94693 4.94953 5.01347 5.05367 5.18325 5.20507 5.29872 5.34170 5.41475 5.53572 5.56918 5.61888 5.63295 5.73095 5.81395 6.18209 6.21252 6.92151 7.08880 7.13723 7.75502 8.39470 9.25549 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017952 B = 0.002841 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.383385 B = 9853.214777 C =10680.643434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.128 3.872 4 H 0.107 0.893 5 C -0.151 4.151 6 N -0.259 5.259 7 N -0.289 5.289 8 C -0.004 4.004 9 C -0.186 4.186 10 C -0.059 4.059 11 C 0.576 3.424 12 O -0.576 6.576 13 N -0.565 5.565 14 C 0.080 3.920 15 C -0.121 4.121 16 C -0.121 4.121 17 C 0.158 3.842 18 H 0.048 0.952 19 C 0.155 3.845 20 H 0.068 0.932 21 C -0.134 4.134 22 C 0.193 3.807 23 N -0.615 5.615 24 C -0.237 4.237 25 H 0.084 0.916 26 C -0.065 4.065 27 N -0.952 5.952 28 Si 0.978 3.022 29 H -0.279 1.279 30 H -0.296 1.296 31 H -0.274 1.274 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.052 0.948 40 H 0.222 0.778 41 H 0.200 0.800 42 H 0.088 0.912 43 H 0.129 0.871 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.011 0.989 51 H 0.011 0.989 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -8.085 -23.564 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C 0.028 3.972 4 H 0.125 0.875 5 C -0.208 4.208 6 N -0.047 5.047 7 N -0.121 5.121 8 C -0.180 4.180 9 C -0.215 4.215 10 C -0.187 4.187 11 C 0.365 3.635 12 O -0.457 6.457 13 N -0.295 5.295 14 C -0.040 4.040 15 C -0.160 4.160 16 C -0.161 4.161 17 C 0.051 3.949 18 H 0.066 0.934 19 C 0.049 3.951 20 H 0.086 0.914 21 C -0.174 4.174 22 C 0.067 3.933 23 N -0.340 5.340 24 C -0.366 4.366 25 H 0.102 0.898 26 C -0.258 4.258 27 N -0.600 5.600 28 Si 0.806 3.194 29 H -0.205 1.205 30 H -0.223 1.223 31 H -0.200 1.200 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.071 0.929 40 H 0.238 0.762 41 H 0.217 0.783 42 H 0.106 0.894 43 H 0.147 0.853 44 H 0.128 0.872 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.029 0.971 51 H 0.030 0.970 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.250 -8.478 -24.049 25.599 hybrid contribution 0.105 0.991 2.264 2.474 sum 2.355 -7.487 -21.786 23.156 Atomic orbital electron populations 1.21768 0.92672 1.03104 1.02883 1.21741 0.98140 0.93455 1.02376 1.22138 0.72864 0.99965 1.02247 0.87542 1.22100 1.03800 1.00044 0.94889 1.46111 1.07816 1.39818 1.10950 1.73109 1.02114 1.18558 1.18368 1.24260 0.94884 1.02694 0.96114 1.23131 0.94621 1.04456 0.99246 1.21329 0.93680 1.10209 0.93464 1.17469 0.85116 0.78680 0.82247 1.90730 1.17378 1.62950 1.74664 1.46716 1.14298 1.49746 1.18722 1.22763 0.80624 0.97823 1.02830 1.21842 1.03703 0.95753 0.94680 1.21927 0.96156 1.01446 0.96599 1.21024 0.95661 0.93919 0.84318 0.93427 1.20707 0.97551 0.94140 0.82717 0.91380 1.22897 1.01604 0.97725 0.95159 1.20706 0.97908 0.82879 0.91782 1.44735 1.85456 1.02312 1.01455 1.19352 1.42155 0.86236 0.88828 0.89811 1.25638 1.02475 0.99597 0.98056 1.70184 1.57244 1.22226 1.10373 0.85159 0.78239 0.78641 0.77323 1.20498 1.22270 1.20016 0.91007 0.93050 0.90377 0.90211 0.93457 0.90650 0.88245 0.92873 0.76203 0.78296 0.89425 0.85319 0.87182 0.91545 0.92941 0.92885 0.90473 0.92007 0.97072 0.97033 0.94446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.54 71.98 0.69 -1.59 16 2 C -0.12 -2.34 5.66 30.59 0.17 -2.17 16 3 C 0.13 2.88 2.95 44.99 0.13 3.01 16 4 H 0.11 2.95 5.62 -2.39 -0.01 2.93 16 5 C -0.15 -2.60 9.06 71.98 0.65 -1.95 16 6 N -0.26 -6.31 3.09 -314.28 -0.97 -7.28 16 7 N -0.29 -6.34 11.52 -57.14 -0.66 -7.00 16 8 C 0.00 -0.07 12.03 85.18 1.02 0.95 16 9 C -0.19 -3.31 8.56 22.66 0.19 -3.12 16 10 C -0.06 -1.49 6.55 40.78 0.27 -1.22 16 11 C 0.58 17.93 7.50 86.58 0.65 18.58 16 12 O -0.58 -21.82 13.87 -4.13 -0.06 -21.88 16 13 N -0.57 -16.55 2.79 -806.11 -2.25 -18.80 16 14 C 0.08 1.62 4.63 86.54 0.40 2.02 16 15 C -0.12 -2.61 6.10 30.59 0.19 -2.42 16 16 C -0.12 -3.94 5.31 30.55 0.16 -3.78 16 17 C 0.16 6.34 3.27 44.75 0.15 6.49 16 18 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 19 C 0.15 5.78 2.81 45.95 0.13 5.91 16 20 H 0.07 2.92 7.00 -2.39 -0.02 2.91 16 21 C -0.13 -5.37 6.46 31.48 0.20 -5.16 16 22 C 0.19 9.79 5.39 86.67 0.47 10.26 16 23 N -0.61 -31.37 2.94 -672.43 -1.97 -33.34 16 24 C -0.24 -13.15 10.27 84.03 0.86 -12.29 16 25 H 0.08 4.42 7.83 -2.92 -0.02 4.40 16 26 C -0.06 -3.68 5.49 84.86 0.47 -3.22 16 27 N -0.95 -57.67 10.29 21.65 0.22 -57.45 16 28 Si 0.98 45.82 29.55 68.60 2.03 47.84 16 29 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 30 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 31 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.08 0.92 6.84 -2.38 -0.02 0.90 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 38 H 0.10 1.29 6.70 -2.39 -0.02 1.27 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.22 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.20 2.34 5.30 -2.91 -0.02 2.32 16 42 H 0.09 1.51 7.69 -2.39 -0.02 1.49 16 43 H 0.13 2.01 4.31 -2.39 -0.01 2.00 16 44 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 46 H 0.05 1.82 8.02 -2.39 -0.02 1.80 16 47 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 49 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 50 H 0.01 0.62 7.60 -2.39 -0.02 0.60 16 51 H 0.01 0.66 7.24 -2.39 -0.02 0.65 16 52 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 Total: -1.00 -72.99 395.12 4.05 -68.94 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.91 Total: 18.66 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 6.81 Total: 10.31 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -5.63 Total: -123.87 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.06 Total: -21.88 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -72.99 4.05 -68.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049504818.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.528 kcal (2) G-P(sol) polarization free energy of solvation -72.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds