Wall clock time and date at job start Wed Apr 1 2020 04:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47487 * 2 1 4 4 H 1.09003 * 109.46533 * 55.00053 * 3 2 1 5 5 C 1.52992 * 109.47265 * 295.00507 * 3 2 1 6 6 N 1.46499 * 109.47043 * 174.99854 * 3 2 1 7 7 N 1.28444 * 125.18759 * 53.46160 * 6 3 2 8 8 C 1.30869 * 110.91966 * 180.15500 * 7 6 3 9 9 C 1.39670 * 107.86497 * 359.61331 * 8 7 6 10 10 C 1.36605 * 125.18848 * 233.18271 * 6 3 2 11 11 C 1.47159 * 126.88287 * 359.97438 * 10 6 3 12 12 O 1.21619 * 120.00390 * 334.50805 * 11 10 6 13 13 N 1.34784 * 119.99675 * 154.51254 * 11 10 6 14 14 C 1.47851 * 122.22826 * 0.79975 * 13 11 10 15 15 C 1.52716 * 111.05963 * 232.48795 * 14 13 11 16 16 C 1.53870 * 111.52316 * 311.47037 * 15 14 13 17 17 C 1.51089 * 107.34180 * 56.92478 * 16 15 14 18 18 H 1.08997 * 108.73530 * 51.47049 * 17 16 15 19 19 C 1.45722 * 122.22727 * 180.50975 * 13 11 10 20 20 H 1.09001 * 111.07325 * 240.51596 * 19 13 11 21 21 C 1.53430 * 116.37814 * 9.88952 * 19 13 11 22 22 C 1.55469 * 101.67437 * 152.72039 * 21 19 13 23 23 N 1.45024 * 119.18672 * 176.73644 * 17 16 15 24 24 C 1.36938 * 126.56220 * 331.16898 * 23 17 16 25 25 H 1.08003 * 119.99776 * 0.02562 * 24 23 17 26 26 C 1.38809 * 120.00117 * 179.97438 * 24 23 17 27 27 N 1.31621 * 119.99856 * 0.02562 * 26 24 23 28 28 Si 1.86799 * 120.00256 * 180.02562 * 26 24 23 29 29 H 1.48495 * 109.46944 * 60.00232 * 28 26 24 30 30 H 1.48503 * 109.47454 * 180.02562 * 28 26 24 31 31 H 1.48501 * 109.47175 * 300.00681 * 28 26 24 32 32 H 1.09003 * 109.47031 * 59.99575 * 1 2 3 33 33 H 1.08997 * 109.47291 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47169 * 300.00067 * 1 2 3 35 35 H 1.09007 * 109.46929 * 240.00056 * 2 1 3 36 36 H 1.08997 * 109.47078 * 120.00829 * 2 1 3 37 37 H 1.09003 * 109.46975 * 299.99276 * 5 3 2 38 38 H 1.09003 * 109.47607 * 59.99659 * 5 3 2 39 39 H 1.09003 * 109.47525 * 179.97438 * 5 3 2 40 40 H 1.08009 * 126.06141 * 179.86923 * 8 7 6 41 41 H 1.08000 * 127.31803 * 180.25203 * 9 8 7 42 42 H 1.08997 * 109.16602 * 352.89522 * 14 13 11 43 43 H 1.09003 * 109.16247 * 112.13138 * 14 13 11 44 44 H 1.09002 * 109.06910 * 71.99237 * 15 14 13 45 45 H 1.08993 * 109.07181 * 191.01630 * 15 14 13 46 46 H 1.09001 * 109.88533 * 176.38129 * 16 15 14 47 47 H 1.08995 * 109.88671 * 297.39254 * 16 15 14 48 48 H 1.08995 * 110.98846 * 270.82099 * 21 19 13 49 49 H 1.09004 * 110.98522 * 34.62255 * 21 19 13 50 50 H 1.09001 * 109.95563 * 96.78252 * 22 21 19 51 51 H 1.09004 * 109.96013 * 217.98399 * 22 21 19 52 52 H 0.97002 * 120.00286 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 7 3.5001 1.4441 0.1204 7 7 4.3063 0.7957 -0.6408 8 6 5.5491 0.9940 -0.2819 9 6 5.5457 1.8614 0.8128 10 6 4.2120 2.1397 1.0560 11 6 3.6695 3.0109 2.1107 12 8 2.5859 3.5428 1.9625 13 7 4.3737 3.2195 3.2409 14 6 5.7029 2.6121 3.4651 15 6 5.7487 1.8686 4.7983 16 6 5.1906 2.7301 5.9446 17 6 3.7832 3.1277 5.5651 18 1 3.2296 2.2314 5.2855 19 6 3.8783 4.0635 4.3205 20 1 4.5499 4.9028 4.5015 21 6 2.4166 4.5176 4.2149 22 6 2.0409 4.7190 5.7100 23 7 2.9865 3.8921 6.5054 24 6 3.0866 3.8646 7.8708 25 1 3.8169 3.2264 8.3459 26 6 2.2503 4.6578 8.6442 27 7 1.3606 5.4360 8.0651 28 14 2.3874 4.6209 10.5068 29 1 3.7536 5.0397 10.9109 30 1 1.3899 5.5505 11.0952 31 1 2.1274 3.2428 10.9951 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5139 -0.8901 36 1 1.8932 -0.5139 0.8899 37 1 2.0699 1.5876 -2.1491 38 1 0.5489 2.1254 -1.3968 39 1 1.9982 3.1544 -1.3071 40 1 6.4225 0.5664 -0.7518 41 1 6.4020 2.2358 1.3541 42 1 5.9173 1.9121 2.6576 43 1 6.4591 3.3971 3.4680 44 1 5.1572 0.9565 4.7179 45 1 6.7818 1.6042 5.0233 46 1 5.1762 2.1529 6.8691 47 1 5.8065 3.6202 6.0731 48 1 2.3376 5.4542 3.6630 49 1 1.7995 3.7439 3.7581 50 1 2.1443 5.7696 5.9813 51 1 1.0167 4.3890 5.8841 52 1 0.7759 5.9901 8.6055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049504824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:23 Heat of formation + Delta-G solvation = 90.795458 kcal Electronic energy + Delta-G solvation = -32523.601427 eV Core-core repulsion = 28526.410495 eV Total energy + Delta-G solvation = -3997.190931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.70303 -40.17364 -37.71733 -36.69603 -35.49190 -32.69045 -32.44530 -31.70928 -30.88059 -29.16786 -28.84732 -28.15324 -25.41780 -24.86706 -24.48131 -22.58463 -22.41997 -21.54715 -21.20041 -19.97028 -19.58886 -18.94749 -17.15489 -16.66836 -16.14738 -16.01725 -15.53112 -15.30445 -14.95438 -14.78311 -14.66871 -14.54924 -13.93884 -13.79512 -13.64945 -13.36189 -13.26296 -12.87524 -12.81251 -12.50654 -12.46868 -12.25312 -12.01727 -11.92358 -11.84129 -11.56186 -11.25634 -11.19021 -11.04131 -10.85334 -10.81054 -10.55367 -10.49827 -10.40751 -10.12390 -10.02748 -9.88609 -9.62323 -9.29988 -9.17627 -8.97135 -8.59627 -8.28858 -6.84512 -5.70359 -3.04995 1.30940 2.24104 2.54646 3.10473 3.22470 3.40254 3.44671 3.46016 4.25795 4.33873 4.49187 4.58527 4.71807 4.84492 4.92164 5.04588 5.08037 5.10806 5.14218 5.28214 5.32365 5.33389 5.39348 5.43791 5.50586 5.59207 5.59490 5.64323 5.68933 5.71070 5.76192 5.78273 5.82366 5.97784 5.99122 6.03486 6.06846 6.22346 6.27903 6.38307 6.40511 6.52524 6.68937 6.70714 6.74117 6.85898 7.12964 7.53214 7.58949 7.65274 7.83055 8.00250 8.23086 8.25998 9.18394 9.82489 10.49980 11.41266 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.003167 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.020255 B = 8839.322387 C = 9807.755753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.138 3.862 4 H 0.126 0.874 5 C -0.158 4.158 6 N -0.250 5.250 7 N -0.279 5.279 8 C -0.007 4.007 9 C -0.209 4.209 10 C -0.023 4.023 11 C 0.587 3.413 12 O -0.531 6.531 13 N -0.579 5.579 14 C 0.079 3.921 15 C -0.128 4.128 16 C -0.117 4.117 17 C 0.161 3.839 18 H 0.018 0.982 19 C 0.117 3.883 20 H 0.084 0.916 21 C -0.130 4.130 22 C 0.173 3.827 23 N -0.593 5.593 24 C -0.228 4.228 25 H 0.078 0.922 26 C -0.006 4.006 27 N -0.920 5.920 28 Si 0.910 3.090 29 H -0.285 1.285 30 H -0.290 1.290 31 H -0.286 1.286 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.184 0.816 41 H 0.171 0.829 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.058 0.942 51 H 0.040 0.960 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.217 -9.190 -17.634 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C 0.038 3.962 4 H 0.144 0.856 5 C -0.215 4.215 6 N -0.038 5.038 7 N -0.111 5.111 8 C -0.183 4.183 9 C -0.238 4.238 10 C -0.153 4.153 11 C 0.374 3.626 12 O -0.409 6.409 13 N -0.311 5.311 14 C -0.043 4.043 15 C -0.167 4.167 16 C -0.155 4.155 17 C 0.052 3.948 18 H 0.035 0.965 19 C 0.013 3.987 20 H 0.102 0.898 21 C -0.168 4.168 22 C 0.049 3.951 23 N -0.318 5.318 24 C -0.356 4.356 25 H 0.096 0.904 26 C -0.203 4.203 27 N -0.567 5.567 28 Si 0.741 3.259 29 H -0.212 1.212 30 H -0.216 1.216 31 H -0.212 1.212 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.201 0.799 41 H 0.188 0.812 42 H 0.125 0.875 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.076 0.924 51 H 0.058 0.942 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.664 -9.357 -18.301 21.321 hybrid contribution 0.792 0.451 1.667 1.900 sum 6.456 -8.906 -16.634 19.942 Atomic orbital electron populations 1.21798 0.94035 1.02479 1.02648 1.21819 0.96939 0.94392 1.03494 1.21987 0.72919 0.98938 1.02359 0.85621 1.22130 1.02596 1.01102 0.95695 1.45971 1.07466 1.30799 1.19585 1.73105 1.01757 1.17935 1.18347 1.23560 0.94386 1.02002 0.98333 1.22515 0.95280 1.04291 1.01692 1.21628 0.92339 1.03591 0.97705 1.16914 0.84327 0.80661 0.80719 1.90787 1.20694 1.50680 1.78754 1.47714 1.19547 1.47694 1.16132 1.22561 0.83694 0.98431 0.99640 1.21891 1.01433 0.99082 0.94290 1.21450 0.97124 0.99521 0.97444 1.20837 0.91412 0.93336 0.89220 0.96499 1.22646 0.97206 0.93331 0.85538 0.89835 1.22971 0.93402 1.01375 0.99083 1.21805 0.93021 0.96284 0.84027 1.44164 1.38281 1.48123 1.01227 1.18952 1.16017 1.20813 0.79838 0.90430 1.24795 0.98395 0.99087 0.97985 1.69935 1.23639 1.29609 1.33530 0.86231 0.77175 0.77282 0.85242 1.21177 1.21610 1.21225 0.91997 0.91911 0.91955 0.90454 0.91418 0.91452 0.90039 0.91732 0.79931 0.81233 0.87467 0.91223 0.91906 0.90768 0.91461 0.91688 0.91957 0.90132 0.92372 0.94222 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.15 0.36 -0.92 16 2 C -0.13 -1.30 5.47 -26.73 -0.15 -1.45 16 3 C 0.14 1.65 2.92 -67.93 -0.20 1.45 16 4 H 0.13 1.75 5.92 -51.93 -0.31 1.44 16 5 C -0.16 -1.61 9.22 37.15 0.34 -1.27 16 6 N -0.25 -3.32 3.09 -50.69 -0.16 -3.47 16 7 N -0.28 -3.51 11.56 30.59 0.35 -3.16 16 8 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 9 C -0.21 -2.30 8.81 -38.99 -0.34 -2.64 16 10 C -0.02 -0.32 6.64 -82.06 -0.54 -0.87 16 11 C 0.59 9.49 7.51 -12.64 -0.09 9.40 16 12 O -0.53 -9.83 11.79 5.26 0.06 -9.77 16 13 N -0.58 -8.99 2.90 -165.03 -0.48 -9.47 16 14 C 0.08 0.93 5.53 -3.45 -0.02 0.91 16 15 C -0.13 -1.60 5.93 -26.42 -0.16 -1.76 16 16 C -0.12 -1.95 5.44 -27.24 -0.15 -2.10 16 17 C 0.16 3.30 2.62 -68.07 -0.18 3.12 16 18 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 19 C 0.12 2.17 3.33 -66.52 -0.22 1.95 16 20 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 21 C -0.13 -2.69 5.00 -25.20 -0.13 -2.81 16 22 C 0.17 4.30 5.47 -1.53 -0.01 4.29 16 23 N -0.59 -14.97 3.35 -162.71 -0.54 -15.52 16 24 C -0.23 -6.22 9.94 -15.06 -0.15 -6.37 16 25 H 0.08 2.02 7.33 -52.48 -0.38 1.64 16 26 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 27 N -0.92 -26.95 10.42 55.49 0.58 -26.37 16 28 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 30 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 31 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 32 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.68 6.57 -51.93 -0.34 0.34 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.18 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.17 1.42 5.83 -52.49 -0.31 1.11 16 42 H 0.11 1.07 3.44 -51.93 -0.18 0.89 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 47 H 0.06 1.09 8.12 -51.93 -0.42 0.66 16 48 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.08 1.73 6.22 -51.93 -0.32 1.40 16 50 H 0.06 1.57 7.16 -51.93 -0.37 1.20 16 51 H 0.04 1.08 7.81 -51.93 -0.41 0.68 16 52 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -31.98 391.67 -9.66 -41.63 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.41 Total: 2.95 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.94 Total: 0.38 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.25 Total: -57.99 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.06 Total: -9.77 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.98 -9.66 -41.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049504824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.427 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds