Wall clock time and date at job start Wed Apr 1 2020 04:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47487 * 2 1 4 4 H 1.09003 * 109.46533 * 55.00053 * 3 2 1 5 5 C 1.52992 * 109.47265 * 295.00507 * 3 2 1 6 6 N 1.46499 * 109.47043 * 174.99854 * 3 2 1 7 7 N 1.28444 * 125.18759 * 53.46160 * 6 3 2 8 8 C 1.30869 * 110.91966 * 180.15500 * 7 6 3 9 9 C 1.39670 * 107.86497 * 359.61331 * 8 7 6 10 10 C 1.36605 * 125.18848 * 233.18271 * 6 3 2 11 11 C 1.47159 * 126.88287 * 359.97438 * 10 6 3 12 12 O 1.21619 * 120.00390 * 334.50805 * 11 10 6 13 13 N 1.34784 * 119.99675 * 154.51254 * 11 10 6 14 14 C 1.47851 * 122.22826 * 0.79975 * 13 11 10 15 15 C 1.52716 * 111.05963 * 232.48795 * 14 13 11 16 16 C 1.53870 * 111.52316 * 311.47037 * 15 14 13 17 17 C 1.51089 * 107.34180 * 56.92478 * 16 15 14 18 18 H 1.08997 * 108.73530 * 51.47049 * 17 16 15 19 19 C 1.45722 * 122.22727 * 180.50975 * 13 11 10 20 20 H 1.09001 * 111.07325 * 240.51596 * 19 13 11 21 21 C 1.53430 * 116.37814 * 9.88952 * 19 13 11 22 22 C 1.55469 * 101.67437 * 152.72039 * 21 19 13 23 23 N 1.45024 * 119.18672 * 176.73644 * 17 16 15 24 24 C 1.36938 * 126.56220 * 331.16898 * 23 17 16 25 25 H 1.08003 * 119.99776 * 0.02562 * 24 23 17 26 26 C 1.38809 * 120.00117 * 179.97438 * 24 23 17 27 27 N 1.31621 * 119.99856 * 0.02562 * 26 24 23 28 28 Si 1.86799 * 120.00256 * 180.02562 * 26 24 23 29 29 H 1.48495 * 109.46944 * 60.00232 * 28 26 24 30 30 H 1.48503 * 109.47454 * 180.02562 * 28 26 24 31 31 H 1.48501 * 109.47175 * 300.00681 * 28 26 24 32 32 H 1.09003 * 109.47031 * 59.99575 * 1 2 3 33 33 H 1.08997 * 109.47291 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47169 * 300.00067 * 1 2 3 35 35 H 1.09007 * 109.46929 * 240.00056 * 2 1 3 36 36 H 1.08997 * 109.47078 * 120.00829 * 2 1 3 37 37 H 1.09003 * 109.46975 * 299.99276 * 5 3 2 38 38 H 1.09003 * 109.47607 * 59.99659 * 5 3 2 39 39 H 1.09003 * 109.47525 * 179.97438 * 5 3 2 40 40 H 1.08009 * 126.06141 * 179.86923 * 8 7 6 41 41 H 1.08000 * 127.31803 * 180.25203 * 9 8 7 42 42 H 1.08997 * 109.16602 * 352.89522 * 14 13 11 43 43 H 1.09003 * 109.16247 * 112.13138 * 14 13 11 44 44 H 1.09002 * 109.06910 * 71.99237 * 15 14 13 45 45 H 1.08993 * 109.07181 * 191.01630 * 15 14 13 46 46 H 1.09001 * 109.88533 * 176.38129 * 16 15 14 47 47 H 1.08995 * 109.88671 * 297.39254 * 16 15 14 48 48 H 1.08995 * 110.98846 * 270.82099 * 21 19 13 49 49 H 1.09004 * 110.98522 * 34.62255 * 21 19 13 50 50 H 1.09001 * 109.95563 * 96.78252 * 22 21 19 51 51 H 1.09004 * 109.96013 * 217.98399 * 22 21 19 52 52 H 0.97002 * 120.00286 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 7 3.5001 1.4441 0.1204 7 7 4.3063 0.7957 -0.6408 8 6 5.5491 0.9940 -0.2819 9 6 5.5457 1.8614 0.8128 10 6 4.2120 2.1397 1.0560 11 6 3.6695 3.0109 2.1107 12 8 2.5859 3.5428 1.9625 13 7 4.3737 3.2195 3.2409 14 6 5.7029 2.6121 3.4651 15 6 5.7487 1.8686 4.7983 16 6 5.1906 2.7301 5.9446 17 6 3.7832 3.1277 5.5651 18 1 3.2296 2.2314 5.2855 19 6 3.8783 4.0635 4.3205 20 1 4.5499 4.9028 4.5015 21 6 2.4166 4.5176 4.2149 22 6 2.0409 4.7190 5.7100 23 7 2.9865 3.8921 6.5054 24 6 3.0866 3.8646 7.8708 25 1 3.8169 3.2264 8.3459 26 6 2.2503 4.6578 8.6442 27 7 1.3606 5.4360 8.0651 28 14 2.3874 4.6209 10.5068 29 1 3.7536 5.0397 10.9109 30 1 1.3899 5.5505 11.0952 31 1 2.1274 3.2428 10.9951 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5139 -0.8901 36 1 1.8932 -0.5139 0.8899 37 1 2.0699 1.5876 -2.1491 38 1 0.5489 2.1254 -1.3968 39 1 1.9982 3.1544 -1.3071 40 1 6.4225 0.5664 -0.7518 41 1 6.4020 2.2358 1.3541 42 1 5.9173 1.9121 2.6576 43 1 6.4591 3.3971 3.4680 44 1 5.1572 0.9565 4.7179 45 1 6.7818 1.6042 5.0233 46 1 5.1762 2.1529 6.8691 47 1 5.8065 3.6202 6.0731 48 1 2.3376 5.4542 3.6630 49 1 1.7995 3.7439 3.7581 50 1 2.1443 5.7696 5.9813 51 1 1.0167 4.3890 5.8841 52 1 0.7759 5.9901 8.6055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049504824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:22 Heat of formation + Delta-G solvation = 72.076285 kcal Electronic energy + Delta-G solvation = -32524.413151 eV Core-core repulsion = 28526.410495 eV Total energy + Delta-G solvation = -3998.002656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.62701 -41.54206 -39.16775 -37.62857 -36.91778 -34.34657 -33.98191 -32.56367 -32.14366 -30.60225 -29.99100 -29.59280 -26.69029 -26.36137 -25.79165 -23.67098 -23.49645 -22.79620 -22.52778 -21.45700 -21.06629 -19.95769 -18.68208 -18.06436 -17.21630 -17.18822 -17.05250 -16.57747 -16.21333 -16.15170 -15.80965 -15.71096 -15.46332 -15.07524 -14.81788 -14.58844 -14.32071 -14.25308 -14.04472 -13.78913 -13.71072 -13.39340 -13.23132 -13.16055 -12.88745 -12.78901 -12.74147 -12.68061 -12.31737 -12.18351 -12.06585 -11.98631 -11.84366 -11.76205 -11.73208 -11.64117 -11.47694 -11.31400 -10.78584 -10.57647 -10.18422 -9.90080 -9.60826 -8.92306 -7.83829 -5.21140 0.28901 1.26169 1.46090 1.49565 1.55715 1.70894 1.97421 2.09001 2.50570 3.20091 3.34381 3.39846 3.46038 3.73974 3.86440 3.92499 3.99022 4.01286 4.05617 4.09366 4.17154 4.24878 4.31996 4.33693 4.35957 4.51949 4.52878 4.55142 4.57480 4.66648 4.71274 4.82491 4.84321 4.88148 4.91741 4.91878 4.99198 5.01504 5.08447 5.14383 5.16875 5.27596 5.29923 5.41220 5.48070 5.55767 5.58651 5.61060 5.71558 5.81498 6.17177 6.34793 6.97754 7.04930 7.15006 7.75087 8.44549 9.27340 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.003167 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.020255 B = 8839.322387 C = 9807.755753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.133 3.867 4 H 0.099 0.901 5 C -0.149 4.149 6 N -0.260 5.260 7 N -0.293 5.293 8 C -0.002 4.002 9 C -0.190 4.190 10 C -0.054 4.054 11 C 0.583 3.417 12 O -0.567 6.567 13 N -0.580 5.580 14 C 0.074 3.926 15 C -0.118 4.118 16 C -0.112 4.112 17 C 0.156 3.844 18 H -0.004 1.004 19 C 0.133 3.867 20 H 0.089 0.911 21 C -0.113 4.113 22 C 0.184 3.816 23 N -0.612 5.612 24 C -0.235 4.235 25 H 0.089 0.911 26 C -0.067 4.067 27 N -0.954 5.954 28 Si 0.979 3.021 29 H -0.272 1.272 30 H -0.297 1.297 31 H -0.279 1.279 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.222 0.778 41 H 0.202 0.798 42 H 0.133 0.867 43 H 0.097 0.903 44 H 0.055 0.945 45 H 0.116 0.884 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.070 0.930 50 H 0.029 0.971 51 H 0.000 1.000 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.672 -10.962 -18.981 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C 0.033 3.967 4 H 0.117 0.883 5 C -0.207 4.207 6 N -0.048 5.048 7 N -0.125 5.125 8 C -0.177 4.177 9 C -0.218 4.218 10 C -0.183 4.183 11 C 0.371 3.629 12 O -0.447 6.447 13 N -0.311 5.311 14 C -0.046 4.046 15 C -0.157 4.157 16 C -0.151 4.151 17 C 0.048 3.952 18 H 0.013 0.987 19 C 0.028 3.972 20 H 0.106 0.894 21 C -0.151 4.151 22 C 0.058 3.942 23 N -0.337 5.337 24 C -0.364 4.364 25 H 0.106 0.894 26 C -0.260 4.260 27 N -0.603 5.603 28 Si 0.807 3.193 29 H -0.198 1.198 30 H -0.224 1.224 31 H -0.205 1.205 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.239 0.761 41 H 0.219 0.781 42 H 0.150 0.850 43 H 0.115 0.885 44 H 0.074 0.926 45 H 0.134 0.866 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.088 0.912 50 H 0.047 0.953 51 H 0.018 0.982 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.174 -11.170 -19.667 24.408 hybrid contribution -0.277 0.941 2.023 2.249 sum 8.898 -10.229 -17.644 22.251 Atomic orbital electron populations 1.21800 0.92871 1.03339 1.02699 1.21747 0.97876 0.93098 1.02971 1.21996 0.72966 0.99759 1.02015 0.88323 1.22076 1.03715 0.99870 0.95001 1.46076 1.07779 1.31182 1.19789 1.73111 1.02730 1.18134 1.18497 1.24255 0.94653 1.01061 0.97764 1.22910 0.94638 1.02960 1.01336 1.21474 0.93751 1.04906 0.98137 1.17289 0.83840 0.80539 0.81243 1.90764 1.22304 1.52028 1.79601 1.47737 1.20919 1.47374 1.15101 1.22926 0.82008 0.99665 0.99982 1.21876 1.03357 0.97715 0.92736 1.21434 0.94407 1.00308 0.98943 1.21003 0.92920 0.92200 0.89112 0.98700 1.22225 0.95588 0.93345 0.86000 0.89358 1.22694 0.95351 1.01339 0.95724 1.21496 0.91380 0.94460 0.86828 1.44418 1.39259 1.48508 1.01512 1.19383 1.15651 1.20289 0.81074 0.89374 1.25675 0.98446 0.99281 1.02601 1.70171 1.24658 1.30655 1.34811 0.85153 0.77319 0.77173 0.79696 1.19780 1.22374 1.20484 0.90603 0.90629 0.93251 0.89784 0.92896 0.90798 0.88322 0.93396 0.76145 0.78150 0.84991 0.88473 0.92606 0.86622 0.92536 0.91293 0.91545 0.91165 0.95284 0.98215 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.67 71.98 0.70 -1.76 16 2 C -0.12 -2.37 5.47 30.59 0.17 -2.21 16 3 C 0.13 3.20 2.92 44.99 0.13 3.34 16 4 H 0.10 2.92 5.92 -2.39 -0.01 2.91 16 5 C -0.15 -3.01 9.22 71.98 0.66 -2.34 16 6 N -0.26 -6.63 3.09 -314.30 -0.97 -7.60 16 7 N -0.29 -6.66 11.56 -57.13 -0.66 -7.32 16 8 C 0.00 -0.03 12.03 85.18 1.02 1.00 16 9 C -0.19 -3.42 8.81 22.65 0.20 -3.22 16 10 C -0.05 -1.42 6.64 40.78 0.27 -1.15 16 11 C 0.58 18.65 7.51 86.58 0.65 19.30 16 12 O -0.57 -21.80 11.79 -4.09 -0.05 -21.85 16 13 N -0.58 -17.24 2.90 -794.27 -2.31 -19.54 16 14 C 0.07 1.45 5.53 86.03 0.48 1.93 16 15 C -0.12 -2.53 5.93 30.79 0.18 -2.35 16 16 C -0.11 -3.58 5.44 30.26 0.16 -3.41 16 17 C 0.16 6.46 2.62 45.69 0.12 6.58 16 18 H 0.00 -0.20 8.06 -2.39 -0.02 -0.22 16 19 C 0.13 4.98 3.33 46.33 0.15 5.13 16 20 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 21 C -0.11 -4.91 5.00 31.59 0.16 -4.75 16 22 C 0.18 9.74 5.47 86.81 0.47 10.22 16 23 N -0.61 -32.09 3.35 -668.70 -2.24 -34.33 16 24 C -0.24 -13.13 9.94 84.03 0.84 -12.29 16 25 H 0.09 4.61 7.33 -2.91 -0.02 4.59 16 26 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 27 N -0.95 -58.64 10.42 21.65 0.23 -58.42 16 28 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 29 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 30 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 31 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 32 H 0.08 1.02 6.57 -2.39 -0.02 1.01 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.10 1.58 6.57 -2.39 -0.02 1.56 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.22 1.86 8.06 -2.91 -0.02 1.83 16 41 H 0.20 2.20 5.83 -2.91 -0.02 2.18 16 42 H 0.13 1.97 3.44 -2.39 -0.01 1.96 16 43 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.06 1.91 7.73 -2.39 -0.02 1.89 16 47 H 0.07 2.15 8.12 -2.39 -0.02 2.13 16 48 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 49 H 0.07 3.22 6.22 -2.38 -0.01 3.21 16 50 H 0.03 1.68 7.16 -2.39 -0.02 1.67 16 51 H 0.00 -0.02 7.81 -2.39 -0.02 -0.04 16 52 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -74.96 391.67 3.77 -71.18 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.91 Total: 19.34 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 6.83 Total: 10.62 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -5.95 Total: -127.21 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -74.96 3.77 -71.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049504824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.259 kcal (2) G-P(sol) polarization free energy of solvation -74.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds