Wall clock time and date at job start Wed Apr 1 2020 04:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47136 * 2 1 4 4 N 1.46496 * 109.47142 * 120.00358 * 2 1 3 5 5 C 1.34947 * 126.03883 * 274.97008 * 4 2 1 6 6 C 1.35311 * 107.74438 * 179.75321 * 5 4 2 7 7 C 1.39866 * 107.92461 * 0.39549 * 6 5 4 8 8 C 1.50702 * 125.90255 * 179.86437 * 7 6 5 9 9 C 1.50702 * 109.47125 * 124.71356 * 8 7 6 10 10 O 1.21284 * 119.99975 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00065 * 180.02562 * 9 8 7 12 12 C 1.47856 * 122.22663 * 359.97438 * 11 9 8 13 13 C 1.52713 * 111.06097 * 127.54222 * 12 11 9 14 14 C 1.53871 * 111.52360 * 48.53067 * 13 12 11 15 15 C 1.51073 * 107.33660 * 303.07028 * 14 13 12 16 16 H 1.08999 * 108.74138 * 309.16730 * 15 14 13 17 17 C 1.45726 * 122.23000 * 180.02562 * 11 9 8 18 18 H 1.09007 * 111.06978 * 119.45138 * 17 11 9 19 19 C 1.53433 * 116.37002 * 350.07554 * 17 11 9 20 20 C 1.55405 * 101.57242 * 207.06227 * 19 17 11 21 21 N 1.45024 * 119.19219 * 183.90032 * 15 14 13 22 22 C 1.36938 * 126.56234 * 28.78707 * 21 15 14 23 23 H 1.08001 * 119.99441 * 352.29626 * 22 21 15 24 24 C 1.38805 * 120.00103 * 172.29492 * 22 21 15 25 25 N 1.31616 * 120.00484 * 351.81008 * 24 22 21 26 26 Si 1.86804 * 119.99984 * 171.80939 * 24 22 21 27 27 H 1.48502 * 109.47376 * 274.41178 * 26 24 22 28 28 H 1.48505 * 109.46782 * 34.40859 * 26 24 22 29 29 H 1.48495 * 109.47455 * 154.40551 * 26 24 22 30 30 N 1.30843 * 108.20144 * 359.60076 * 7 6 5 31 31 H 1.08998 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46768 * 300.00107 * 1 2 3 33 33 H 1.09002 * 109.47078 * 59.99359 * 1 2 3 34 34 H 1.09002 * 109.46627 * 240.00419 * 2 1 3 35 35 H 1.09006 * 109.46803 * 180.02562 * 3 2 1 36 36 H 1.08992 * 109.47516 * 300.00286 * 3 2 1 37 37 H 1.09002 * 109.47020 * 60.00660 * 3 2 1 38 38 H 1.08001 * 126.12671 * 0.02562 * 5 4 2 39 39 H 1.08000 * 126.03778 * 180.27928 * 6 5 4 40 40 H 1.08998 * 109.46587 * 4.71962 * 8 7 6 41 41 H 1.08995 * 109.46894 * 244.71768 * 8 7 6 42 42 H 1.08997 * 109.16001 * 7.13944 * 12 11 9 43 43 H 1.08992 * 109.11762 * 247.92237 * 12 11 9 44 44 H 1.09001 * 109.07371 * 288.00002 * 13 12 11 45 45 H 1.09004 * 109.06962 * 169.05820 * 13 12 11 46 46 H 1.09004 * 109.87741 * 183.61764 * 14 13 12 47 47 H 1.08997 * 109.94439 * 62.56994 * 14 13 12 48 48 H 1.08999 * 110.98224 * 325.38458 * 19 17 11 49 49 H 1.08999 * 110.98270 * 89.14957 * 19 17 11 50 50 H 1.09001 * 110.06684 * 263.51948 * 20 19 17 51 51 H 1.09007 * 109.82805 * 142.30035 * 20 19 17 52 52 H 0.96996 * 120.00289 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1938 -0.1393 2.4152 6 6 2.6515 -1.1066 3.2433 7 6 2.7681 -2.2875 2.5028 8 6 3.2456 -3.6167 3.0285 9 6 2.2045 -4.6702 2.7502 10 8 1.1763 -4.3712 2.1807 11 7 2.4160 -5.9446 3.1342 12 6 3.6511 -6.3635 3.8309 13 6 3.3261 -7.1155 5.1197 14 6 2.2716 -8.2109 4.8836 15 6 1.0518 -7.5420 4.2946 16 1 0.7831 -6.6905 4.9197 17 6 1.4432 -7.0017 2.8896 18 1 1.8676 -7.7879 2.2650 19 6 0.0648 -6.5558 2.3844 20 6 -0.8440 -7.7049 2.9029 21 7 -0.1390 -8.3325 4.0487 22 6 -0.5339 -9.4484 4.7373 23 1 0.1241 -9.8916 5.4701 24 6 -1.7797 -10.0097 4.4933 25 7 -2.6443 -9.3837 3.7234 26 14 -2.2291 -11.6539 5.2578 27 1 -1.7355 -12.7542 4.3912 28 1 -1.6040 -11.7628 6.6004 29 1 -3.7050 -11.7516 5.3895 30 7 2.3856 -2.0402 1.2762 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8932 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6767 1.9563 0.8901 38 1 1.9992 0.8887 2.6831 39 1 2.8872 -0.9874 4.2905 40 1 3.4107 -3.5441 4.1034 41 1 4.1786 -3.8885 2.5350 42 1 4.2432 -5.4806 4.0715 43 1 4.2288 -7.0133 3.1736 44 1 2.9468 -6.4092 5.8582 45 1 4.2371 -7.5749 5.5034 46 1 2.0131 -8.6865 5.8297 47 1 2.6584 -8.9556 4.1881 48 1 -0.2204 -5.5990 2.8219 49 1 0.0454 -6.5062 1.2957 50 1 -1.0027 -8.4408 2.1146 51 1 -1.8008 -7.2996 3.2321 52 1 -3.5147 -9.7762 3.5527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049610400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:48 Heat of formation + Delta-G solvation = 55.593349 kcal Electronic energy + Delta-G solvation = -31474.510389 eV Core-core repulsion = 27475.792980 eV Total energy + Delta-G solvation = -3998.717409 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.21195 -41.50629 -39.20073 -36.88888 -36.73337 -34.35094 -33.81600 -32.83098 -30.93673 -30.75587 -29.74046 -28.86065 -28.19895 -26.38915 -25.76450 -23.70890 -22.81729 -22.61988 -21.56649 -21.00295 -20.84420 -19.65933 -18.58876 -17.96287 -17.33354 -17.19887 -16.69672 -16.50100 -16.05621 -15.84825 -15.55859 -15.36791 -15.25937 -14.97018 -14.67786 -14.46024 -14.32066 -14.09009 -13.87464 -13.70292 -13.58465 -13.37483 -13.15229 -13.09728 -13.03224 -12.88543 -12.80546 -12.71695 -12.33937 -12.28039 -12.10083 -12.08593 -11.92841 -11.74274 -11.70291 -11.50469 -11.40930 -11.39250 -10.79333 -10.32918 -10.08858 -9.47388 -9.39194 -8.90297 -7.85612 -5.23536 1.06735 1.44352 1.48036 1.55791 1.65598 1.75696 1.80475 2.20926 2.50484 3.32086 3.37367 3.49005 3.68240 3.80089 3.93298 3.96046 3.99121 4.05155 4.09398 4.13378 4.17876 4.28416 4.31791 4.38149 4.53529 4.55726 4.58713 4.59746 4.62583 4.73732 4.77715 4.81281 4.86089 4.90965 4.93910 4.95505 5.05693 5.12081 5.15029 5.18796 5.19631 5.24647 5.31917 5.44517 5.50241 5.57522 5.63019 5.72440 5.79374 6.16936 6.29022 6.61573 6.91533 7.02619 7.35076 7.74277 8.45975 9.26731 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.002580 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.874719 B =10850.171843 C =12076.447857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 C -0.151 4.151 4 N -0.373 5.373 5 C 0.053 3.947 6 C -0.282 4.282 7 C 0.064 3.936 8 C -0.048 4.048 9 C 0.509 3.491 10 O -0.568 6.568 11 N -0.603 5.603 12 C 0.103 3.897 13 C -0.120 4.120 14 C -0.112 4.112 15 C 0.153 3.847 16 H -0.004 1.004 17 C 0.134 3.866 18 H 0.078 0.922 19 C -0.108 4.108 20 C 0.182 3.818 21 N -0.610 5.610 22 C -0.233 4.233 23 H 0.091 0.909 24 C -0.073 4.073 25 N -0.956 5.956 26 Si 0.981 3.019 27 H -0.284 1.284 28 H -0.264 1.264 29 H -0.299 1.299 30 N -0.318 5.318 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.205 0.795 39 H 0.169 0.831 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.113 0.887 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.006 0.994 51 H 0.012 0.988 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.394 21.615 -1.960 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 C -0.209 4.209 4 N -0.157 5.157 5 C -0.093 4.093 6 C -0.311 4.311 7 C -0.102 4.102 8 C -0.089 4.089 9 C 0.298 3.702 10 O -0.446 6.446 11 N -0.337 5.337 12 C -0.017 4.017 13 C -0.158 4.158 14 C -0.150 4.150 15 C 0.044 3.956 16 H 0.013 0.987 17 C 0.028 3.972 18 H 0.096 0.904 19 C -0.147 4.147 20 C 0.056 3.944 21 N -0.335 5.335 22 C -0.362 4.362 23 H 0.108 0.892 24 C -0.265 4.265 25 N -0.604 5.604 26 Si 0.809 3.191 27 H -0.211 1.211 28 H -0.188 1.188 29 H -0.225 1.225 30 N -0.140 5.140 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.222 0.778 39 H 0.186 0.814 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.142 0.858 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.131 0.869 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.074 0.926 50 H 0.024 0.976 51 H 0.030 0.970 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.457 21.281 -3.532 28.391 hybrid contribution -1.375 -0.956 0.789 1.852 sum 17.082 20.325 -2.743 26.691 Atomic orbital electron populations 1.22203 0.93705 1.01621 1.04268 1.21502 0.94857 0.94200 0.84935 1.22142 1.01977 0.91606 1.05205 1.49135 1.50265 1.06497 1.09771 1.22987 0.99982 1.01229 0.85065 1.21691 1.15151 0.91929 1.02336 1.21978 1.00036 0.96444 0.91770 1.20175 0.97677 0.86064 1.04958 1.21087 0.88204 0.82922 0.77944 1.90722 1.29733 1.81107 1.43050 1.48114 1.20499 1.06875 1.58199 1.22123 0.84329 1.01805 0.93477 1.21890 0.99496 0.96954 0.97479 1.21417 0.94339 0.98655 1.00631 1.20959 0.87977 0.92526 0.94091 0.98686 1.21935 0.88771 0.89108 0.97359 0.90425 1.22586 0.94759 0.97804 0.99508 1.21399 0.93294 0.91284 0.88374 1.44345 1.23331 1.30333 1.35485 1.19424 0.98860 1.01282 1.16619 0.89150 1.25770 0.96187 1.03042 1.01521 1.70205 1.06998 1.39542 1.43702 0.85053 0.76395 0.79209 0.78460 1.21093 1.18819 1.22541 1.77345 1.20713 0.94252 1.21694 0.95126 0.91586 0.87997 0.89229 0.91698 0.87977 0.90313 0.77807 0.81371 0.83832 0.84924 0.85772 0.89711 0.91706 0.86883 0.92619 0.91715 0.91469 0.92568 0.97577 0.96975 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.52 71.98 0.69 -2.10 16 2 C 0.15 2.53 3.93 44.99 0.18 2.70 16 3 C -0.15 -1.31 8.83 71.98 0.64 -0.67 16 4 N -0.37 -8.94 3.53 -327.50 -1.15 -10.10 16 5 C 0.05 1.02 10.59 83.54 0.88 1.90 16 6 C -0.28 -6.00 10.72 21.99 0.24 -5.77 16 7 C 0.06 1.72 6.02 43.10 0.26 1.98 16 8 C -0.05 -1.02 4.70 29.10 0.14 -0.88 16 9 C 0.51 16.40 7.68 87.66 0.67 17.07 16 10 O -0.57 -24.40 12.39 -3.04 -0.04 -24.44 16 11 N -0.60 -18.19 2.91 -791.05 -2.30 -20.49 16 12 C 0.10 1.91 6.32 86.02 0.54 2.46 16 13 C -0.12 -2.46 5.92 30.79 0.18 -2.28 16 14 C -0.11 -3.64 5.42 30.26 0.16 -3.48 16 15 C 0.15 6.58 2.58 45.51 0.12 6.70 16 16 H 0.00 -0.20 8.04 -2.39 -0.02 -0.22 16 17 C 0.13 5.31 3.33 46.16 0.15 5.46 16 18 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 19 C -0.11 -5.14 5.01 31.57 0.16 -4.98 16 20 C 0.18 10.24 5.47 86.83 0.47 10.71 16 21 N -0.61 -33.39 3.35 -670.37 -2.25 -35.63 16 22 C -0.23 -13.41 9.94 84.03 0.84 -12.58 16 23 H 0.09 4.85 7.29 -2.91 -0.02 4.82 16 24 C -0.07 -4.31 5.45 84.86 0.46 -3.84 16 25 N -0.96 -61.19 10.70 21.65 0.23 -60.96 16 26 Si 0.98 47.16 29.56 68.60 2.03 49.19 16 27 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 28 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 29 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 30 N -0.32 -10.05 11.92 -47.38 -0.56 -10.62 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 35 H 0.06 0.60 8.14 -2.38 -0.02 0.59 16 36 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 0.50 7.16 -2.39 -0.02 0.48 16 38 H 0.21 2.08 7.26 -2.91 -0.02 2.06 16 39 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.14 1.98 7.73 -2.39 -0.02 1.96 16 41 H 0.13 2.05 8.02 -2.39 -0.02 2.03 16 42 H 0.12 1.26 6.18 -2.39 -0.01 1.24 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.06 1.92 7.72 -2.38 -0.02 1.90 16 47 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 48 H 0.07 3.43 6.21 -2.39 -0.01 3.41 16 49 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 50 H 0.01 0.36 7.87 -2.39 -0.02 0.34 16 51 H 0.01 0.77 7.27 -2.38 -0.02 0.75 16 52 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -88.44 401.90 3.62 -84.81 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.89 Total: 15.84 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 6.78 Total: 12.40 kcal Atomic # 7 Polarization: -131.76 SS G_CDS: -6.04 Total: -137.80 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.04 Total: -24.44 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -88.44 3.62 -84.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049610400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.406 kcal (2) G-P(sol) polarization free energy of solvation -88.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds