Wall clock time and date at job start Wed Apr 1 2020 04:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47227 * 2 1 4 4 H 1.09001 * 109.47150 * 305.00602 * 3 2 1 5 5 C 1.52999 * 109.47191 * 65.00221 * 3 2 1 6 6 N 1.46502 * 109.47378 * 185.00355 * 3 2 1 7 7 N 1.28444 * 125.18690 * 294.51604 * 6 3 2 8 8 C 1.30861 * 110.92730 * 179.88058 * 7 6 3 9 9 C 1.39681 * 107.85907 * 0.38058 * 8 7 6 10 10 C 1.36596 * 125.19009 * 114.82407 * 6 3 2 11 11 C 1.47159 * 126.88442 * 359.97438 * 10 6 3 12 12 O 1.21629 * 120.00352 * 4.46329 * 11 10 6 13 13 N 1.34779 * 119.99472 * 184.45931 * 11 10 6 14 14 C 1.47167 * 136.00731 * 4.28977 * 13 11 10 15 15 C 1.52637 * 87.97198 * 206.71847 * 14 13 11 16 16 C 1.47164 * 135.99469 * 184.65745 * 13 11 10 17 17 C 1.52561 * 113.89414 * 88.17496 * 15 14 13 18 18 C 1.53353 * 109.12860 * 190.30396 * 17 15 14 19 19 N 1.46883 * 108.75187 * 307.75395 * 18 17 15 20 20 C 1.36933 * 120.46719 * 235.60723 * 19 18 17 21 21 H 1.08003 * 119.99913 * 32.03660 * 20 19 18 22 22 C 1.38818 * 120.00102 * 212.04274 * 20 19 18 23 23 N 1.31617 * 119.99911 * 10.16541 * 22 20 19 24 24 Si 1.86797 * 119.99865 * 190.16901 * 22 20 19 25 25 H 1.48506 * 109.46842 * 89.99840 * 24 22 20 26 26 H 1.48495 * 109.47163 * 209.99716 * 24 22 20 27 27 H 1.48495 * 109.47258 * 329.99915 * 24 22 20 28 28 C 1.46896 * 119.07083 * 55.62796 * 19 18 17 29 29 C 1.52560 * 114.26164 * 220.76183 * 15 14 13 30 30 H 1.09006 * 109.46601 * 299.99502 * 1 2 3 31 31 H 1.09000 * 109.46927 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47148 * 59.99967 * 1 2 3 33 33 H 1.08994 * 109.47351 * 120.00544 * 2 1 3 34 34 H 1.09002 * 109.46575 * 239.99995 * 2 1 3 35 35 H 1.09002 * 109.47377 * 59.99435 * 5 3 2 36 36 H 1.08994 * 109.47528 * 180.02562 * 5 3 2 37 37 H 1.09004 * 109.46933 * 300.00208 * 5 3 2 38 38 H 1.07995 * 126.07239 * 180.13684 * 8 7 6 39 39 H 1.08004 * 127.31697 * 179.76203 * 9 8 7 40 40 H 1.08996 * 113.48491 * 321.42314 * 14 13 11 41 41 H 1.09002 * 113.48403 * 91.91805 * 14 13 11 42 42 H 1.08993 * 113.49262 * 268.08282 * 16 13 11 43 43 H 1.09004 * 113.49046 * 38.53594 * 16 13 11 44 44 H 1.08998 * 109.52724 * 310.20124 * 17 15 14 45 45 H 1.08999 * 109.52623 * 70.40960 * 17 15 14 46 46 H 1.09000 * 109.58871 * 187.97990 * 18 17 15 47 47 H 1.08999 * 109.59335 * 67.53600 * 18 17 15 48 48 H 0.96996 * 119.99986 * 180.02562 * 23 22 20 49 49 H 1.09007 * 109.58846 * 184.58710 * 28 19 18 50 50 H 1.09004 * 109.59250 * 64.14505 * 28 19 18 51 51 H 1.09004 * 109.52507 * 289.75446 * 29 15 14 52 52 H 1.08992 * 109.52376 * 49.89422 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6354 2.1265 1.3074 6 7 3.5001 1.4442 -0.1205 7 7 4.3158 0.9820 0.7575 8 6 5.5557 1.1234 0.3638 9 6 5.5398 1.7449 -0.8870 10 6 4.2019 1.9431 -1.1809 11 6 3.6466 2.5666 -2.3927 12 8 2.4483 2.7521 -2.4868 13 7 4.4662 2.9323 -3.3983 14 6 5.9036 2.8114 -3.6898 15 6 5.7788 4.0646 -4.5522 16 6 4.3171 3.6333 -4.6836 17 6 5.9766 5.3667 -3.7823 18 6 5.5783 6.5458 -4.6784 19 7 6.2941 6.4310 -5.9558 20 6 7.0740 7.4609 -6.4097 21 1 7.5904 8.0977 -5.7066 22 6 7.2009 7.6867 -7.7735 23 7 6.4232 7.0476 -8.6214 24 14 8.4753 8.8975 -8.4051 25 1 9.7537 8.1846 -8.6561 26 1 7.9932 9.5091 -9.6695 27 1 8.6924 9.9613 -7.3920 28 6 6.1613 5.1959 -6.7399 29 6 6.5642 4.0071 -5.8589 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 2.0699 1.5874 2.1492 36 1 1.9983 3.1542 1.3072 37 1 0.5490 2.1252 1.3970 38 1 6.4353 0.8179 0.9108 39 1 6.3907 2.0139 -1.4954 40 1 6.5376 2.9499 -2.8140 41 1 6.1579 1.9166 -4.2579 42 1 4.1355 2.9645 -5.5248 43 1 3.6129 4.4645 -4.6460 44 1 5.3518 5.3605 -2.8892 45 1 7.0235 5.4648 -3.4952 46 1 5.8483 7.4827 -4.1911 47 1 4.5035 6.5214 -4.8582 48 1 6.5121 7.2050 -9.5744 49 1 6.8154 5.2437 -7.6106 50 1 5.1270 5.0775 -7.0630 51 1 7.6318 4.0576 -5.6447 52 1 6.3402 3.0752 -6.3778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050534430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:51 Heat of formation + Delta-G solvation = 100.995395 kcal Electronic energy + Delta-G solvation = -31447.298824 eV Core-core repulsion = 27450.550195 eV Total energy + Delta-G solvation = -3996.748629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.70949 -40.76653 -38.27613 -36.73354 -35.91732 -32.65170 -31.80729 -31.34215 -30.46332 -29.70364 -29.22129 -27.30288 -26.16567 -25.16597 -24.32327 -22.80359 -22.41404 -22.31705 -20.92712 -20.43342 -19.18807 -18.10610 -17.45196 -16.69075 -16.39654 -16.13976 -15.59095 -15.49783 -15.40608 -14.92088 -14.37980 -14.16292 -13.92790 -13.88520 -13.73626 -13.52841 -13.37151 -13.09559 -12.89004 -12.67799 -12.58195 -12.34029 -12.10980 -12.03826 -11.84862 -11.58027 -11.46112 -11.36321 -11.16128 -11.02603 -10.85843 -10.79021 -10.50485 -10.33059 -10.15277 -9.97163 -9.82120 -9.65844 -9.43159 -9.34113 -9.15231 -8.66217 -8.49371 -6.63163 -5.80767 -3.29864 1.17023 2.13873 2.50458 2.89136 3.15505 3.35441 3.42628 3.43605 4.17310 4.23434 4.46126 4.48343 4.51283 4.65657 4.83359 4.94779 4.99149 5.02848 5.06302 5.16690 5.20016 5.26913 5.38475 5.41552 5.43570 5.49432 5.53963 5.58219 5.59598 5.61183 5.64333 5.66093 5.82776 5.86203 5.91534 5.93521 6.03642 6.04322 6.24128 6.38051 6.43066 6.54460 6.58176 6.63370 6.63918 6.79152 6.93425 7.32123 7.64959 7.67590 7.76945 7.89837 8.05928 8.46603 9.20648 9.81550 10.39239 11.26718 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.002293 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.061359 B =12209.878159 C =12545.583849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.129 3.871 4 H 0.137 0.863 5 C -0.158 4.158 6 N -0.251 5.251 7 N -0.276 5.276 8 C -0.009 4.009 9 C -0.192 4.192 10 C -0.030 4.030 11 C 0.616 3.384 12 O -0.548 6.548 13 N -0.626 5.626 14 C 0.096 3.904 15 C -0.074 4.074 16 C 0.119 3.881 17 C -0.107 4.107 18 C 0.147 3.853 19 N -0.591 5.591 20 C -0.252 4.252 21 H 0.064 0.936 22 C 0.004 3.996 23 N -0.905 5.905 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.171 3.829 29 C -0.125 4.125 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.185 0.815 39 H 0.163 0.837 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.018 0.982 48 H 0.254 0.746 49 H 0.093 0.907 50 H 0.018 0.982 51 H 0.063 0.937 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.080 -14.545 16.034 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.029 3.971 4 H 0.154 0.846 5 C -0.216 4.216 6 N -0.039 5.039 7 N -0.108 5.108 8 C -0.184 4.184 9 C -0.221 4.221 10 C -0.158 4.158 11 C 0.405 3.595 12 O -0.428 6.428 13 N -0.359 5.359 14 C -0.026 4.026 15 C -0.075 4.075 16 C -0.002 4.002 17 C -0.146 4.146 18 C 0.020 3.980 19 N -0.313 5.313 20 C -0.382 4.382 21 H 0.081 0.919 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.734 3.266 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.045 3.955 29 C -0.165 4.165 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.202 0.798 39 H 0.181 0.819 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.036 0.964 48 H 0.064 0.936 49 H 0.111 0.889 50 H 0.036 0.964 51 H 0.082 0.918 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.698 -14.869 16.861 23.457 hybrid contribution 1.263 0.754 -0.995 1.776 sum -5.434 -14.115 15.866 21.920 Atomic orbital electron populations 1.21784 0.94029 1.02419 1.02580 1.21829 0.97005 0.94586 1.03216 1.22193 0.72991 0.99158 1.02752 0.84600 1.22127 1.02479 1.00972 0.96035 1.45979 1.07406 1.39744 1.10773 1.73106 1.01479 1.18608 1.17653 1.23567 0.94454 1.04155 0.96267 1.22568 0.95157 1.05339 0.99009 1.21331 0.92284 1.08692 0.93528 1.16326 0.84662 0.77574 0.80949 1.90709 1.14194 1.57017 1.80861 1.49257 1.10783 1.56984 1.18891 1.23462 0.80945 0.99319 0.98917 1.21664 0.94676 0.94167 0.97015 1.23161 0.98355 0.95284 0.83423 1.21729 1.01310 0.94285 0.97285 1.20892 0.94464 0.94919 0.87698 1.43981 1.53625 1.13848 1.19844 1.19184 1.20662 1.07975 0.90376 0.91864 1.25176 0.98598 0.98738 0.96917 1.69951 1.38557 1.44584 1.01820 0.86264 0.81112 0.80980 0.78226 1.21414 1.21721 1.20445 1.20825 0.99048 0.82113 0.93508 1.22096 0.99436 1.00669 0.94264 0.91998 0.91965 0.91990 0.90734 0.91538 0.91097 0.91976 0.90104 0.79842 0.81926 0.90090 0.89348 0.89522 0.89998 0.93039 0.91575 0.92617 0.96408 0.93575 0.88885 0.96367 0.91781 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C -0.13 -1.21 5.66 -26.73 -0.15 -1.36 16 3 C 0.13 1.45 3.02 -67.93 -0.21 1.25 16 4 H 0.14 1.78 5.32 -51.93 -0.28 1.50 16 5 C -0.16 -1.48 9.05 37.16 0.34 -1.15 16 6 N -0.25 -3.26 3.09 -50.69 -0.16 -3.42 16 7 N -0.28 -3.47 11.52 30.59 0.35 -3.12 16 8 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16 9 C -0.19 -2.22 10.18 -38.98 -0.40 -2.61 16 10 C -0.03 -0.41 6.95 -82.06 -0.57 -0.99 16 11 C 0.62 9.48 8.05 -12.64 -0.10 9.38 16 12 O -0.55 -9.68 15.16 5.25 0.08 -9.60 16 13 N -0.63 -8.82 3.46 -186.71 -0.65 -9.47 16 14 C 0.10 1.14 6.61 -8.37 -0.06 1.08 16 15 C -0.07 -1.08 0.83 -155.17 -0.13 -1.21 16 16 C 0.12 1.77 7.57 -8.21 -0.06 1.70 16 17 C -0.11 -1.72 5.25 -26.77 -0.14 -1.86 16 18 C 0.15 2.93 6.41 -3.65 -0.02 2.90 16 19 N -0.59 -13.90 2.95 -172.18 -0.51 -14.40 16 20 C -0.25 -6.62 9.56 -15.06 -0.14 -6.76 16 21 H 0.06 1.64 7.85 -52.48 -0.41 1.23 16 22 C 0.00 0.12 5.05 -17.43 -0.09 0.03 16 23 N -0.90 -25.28 11.02 55.49 0.61 -24.67 16 24 Si 0.90 21.07 29.57 -169.99 -5.03 16.05 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 C 0.17 3.73 5.22 -3.64 -0.02 3.71 16 29 C -0.12 -2.04 5.31 -26.77 -0.14 -2.18 16 30 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.58 6.56 -51.93 -0.34 0.24 16 38 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.16 1.56 5.18 -52.48 -0.27 1.29 16 40 H 0.08 0.84 5.67 -51.93 -0.29 0.55 16 41 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 42 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 43 H 0.08 1.34 7.53 -51.93 -0.39 0.95 16 44 H 0.05 0.79 7.95 -51.93 -0.41 0.38 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 47 H 0.02 0.37 7.60 -51.93 -0.39 -0.03 16 48 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.09 2.32 6.00 -51.93 -0.31 2.01 16 50 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 52 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -30.67 402.50 -9.45 -40.12 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.48 Total: 1.57 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.74 Total: 0.87 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.35 Total: -55.08 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.67 -9.45 -40.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050534430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.118 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds