Wall clock time and date at job start Wed Apr 1 2020 04:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47227 * 2 1 4 4 H 1.09001 * 109.47150 * 305.00602 * 3 2 1 5 5 C 1.52999 * 109.47191 * 65.00221 * 3 2 1 6 6 N 1.46502 * 109.47378 * 185.00355 * 3 2 1 7 7 N 1.28444 * 125.18690 * 294.51604 * 6 3 2 8 8 C 1.30861 * 110.92730 * 179.88058 * 7 6 3 9 9 C 1.39681 * 107.85907 * 0.38058 * 8 7 6 10 10 C 1.36596 * 125.19009 * 114.82407 * 6 3 2 11 11 C 1.47159 * 126.88442 * 359.97438 * 10 6 3 12 12 O 1.21629 * 120.00352 * 4.46329 * 11 10 6 13 13 N 1.34779 * 119.99472 * 184.45931 * 11 10 6 14 14 C 1.47167 * 136.00731 * 4.28977 * 13 11 10 15 15 C 1.52637 * 87.97198 * 206.71847 * 14 13 11 16 16 C 1.47164 * 135.99469 * 184.65745 * 13 11 10 17 17 C 1.52561 * 113.89414 * 88.17496 * 15 14 13 18 18 C 1.53353 * 109.12860 * 190.30396 * 17 15 14 19 19 N 1.46883 * 108.75187 * 307.75395 * 18 17 15 20 20 C 1.36933 * 120.46719 * 235.60723 * 19 18 17 21 21 H 1.08003 * 119.99913 * 32.03660 * 20 19 18 22 22 C 1.38818 * 120.00102 * 212.04274 * 20 19 18 23 23 N 1.31617 * 119.99911 * 10.16541 * 22 20 19 24 24 Si 1.86797 * 119.99865 * 190.16901 * 22 20 19 25 25 H 1.48506 * 109.46842 * 89.99840 * 24 22 20 26 26 H 1.48495 * 109.47163 * 209.99716 * 24 22 20 27 27 H 1.48495 * 109.47258 * 329.99915 * 24 22 20 28 28 C 1.46896 * 119.07083 * 55.62796 * 19 18 17 29 29 C 1.52560 * 114.26164 * 220.76183 * 15 14 13 30 30 H 1.09006 * 109.46601 * 299.99502 * 1 2 3 31 31 H 1.09000 * 109.46927 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47148 * 59.99967 * 1 2 3 33 33 H 1.08994 * 109.47351 * 120.00544 * 2 1 3 34 34 H 1.09002 * 109.46575 * 239.99995 * 2 1 3 35 35 H 1.09002 * 109.47377 * 59.99435 * 5 3 2 36 36 H 1.08994 * 109.47528 * 180.02562 * 5 3 2 37 37 H 1.09004 * 109.46933 * 300.00208 * 5 3 2 38 38 H 1.07995 * 126.07239 * 180.13684 * 8 7 6 39 39 H 1.08004 * 127.31697 * 179.76203 * 9 8 7 40 40 H 1.08996 * 113.48491 * 321.42314 * 14 13 11 41 41 H 1.09002 * 113.48403 * 91.91805 * 14 13 11 42 42 H 1.08993 * 113.49262 * 268.08282 * 16 13 11 43 43 H 1.09004 * 113.49046 * 38.53594 * 16 13 11 44 44 H 1.08998 * 109.52724 * 310.20124 * 17 15 14 45 45 H 1.08999 * 109.52623 * 70.40960 * 17 15 14 46 46 H 1.09000 * 109.58871 * 187.97990 * 18 17 15 47 47 H 1.08999 * 109.59335 * 67.53600 * 18 17 15 48 48 H 0.96996 * 119.99986 * 180.02562 * 23 22 20 49 49 H 1.09007 * 109.58846 * 184.58710 * 28 19 18 50 50 H 1.09004 * 109.59250 * 64.14505 * 28 19 18 51 51 H 1.09004 * 109.52507 * 289.75446 * 29 15 14 52 52 H 1.08992 * 109.52376 * 49.89422 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6354 2.1265 1.3074 6 7 3.5001 1.4442 -0.1205 7 7 4.3158 0.9820 0.7575 8 6 5.5557 1.1234 0.3638 9 6 5.5398 1.7449 -0.8870 10 6 4.2019 1.9431 -1.1809 11 6 3.6466 2.5666 -2.3927 12 8 2.4483 2.7521 -2.4868 13 7 4.4662 2.9323 -3.3983 14 6 5.9036 2.8114 -3.6898 15 6 5.7788 4.0646 -4.5522 16 6 4.3171 3.6333 -4.6836 17 6 5.9766 5.3667 -3.7823 18 6 5.5783 6.5458 -4.6784 19 7 6.2941 6.4310 -5.9558 20 6 7.0740 7.4609 -6.4097 21 1 7.5904 8.0977 -5.7066 22 6 7.2009 7.6867 -7.7735 23 7 6.4232 7.0476 -8.6214 24 14 8.4753 8.8975 -8.4051 25 1 9.7537 8.1846 -8.6561 26 1 7.9932 9.5091 -9.6695 27 1 8.6924 9.9613 -7.3920 28 6 6.1613 5.1959 -6.7399 29 6 6.5642 4.0071 -5.8589 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 2.0699 1.5874 2.1492 36 1 1.9983 3.1542 1.3072 37 1 0.5490 2.1252 1.3970 38 1 6.4353 0.8179 0.9108 39 1 6.3907 2.0139 -1.4954 40 1 6.5376 2.9499 -2.8140 41 1 6.1579 1.9166 -4.2579 42 1 4.1355 2.9645 -5.5248 43 1 3.6129 4.4645 -4.6460 44 1 5.3518 5.3605 -2.8892 45 1 7.0235 5.4648 -3.4952 46 1 5.8483 7.4827 -4.1911 47 1 4.5035 6.5214 -4.8582 48 1 6.5121 7.2050 -9.5744 49 1 6.8154 5.2437 -7.6106 50 1 5.1270 5.0775 -7.0630 51 1 7.6318 4.0576 -5.6447 52 1 6.3402 3.0752 -6.3778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050534430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:50 Heat of formation + Delta-G solvation = 84.094213 kcal Electronic energy + Delta-G solvation = -31448.031714 eV Core-core repulsion = 27450.550195 eV Total energy + Delta-G solvation = -3997.481519 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.61197 -41.94784 -39.51579 -37.70261 -37.34791 -34.32072 -32.75856 -32.49170 -31.82223 -31.24461 -29.97723 -28.71489 -27.27730 -26.13944 -25.80494 -24.06447 -23.72454 -23.19319 -22.40016 -21.45479 -20.17656 -19.57293 -18.53722 -18.18386 -17.59950 -17.21435 -16.82215 -16.58596 -16.48552 -16.20550 -15.69737 -15.34970 -15.15819 -15.11219 -14.94008 -14.74960 -14.61638 -14.28803 -13.97315 -13.86624 -13.63293 -13.30399 -13.23971 -13.07140 -12.86572 -12.85525 -12.80591 -12.68468 -12.57037 -12.24983 -12.15763 -11.99530 -11.88770 -11.80308 -11.78665 -11.34574 -11.23988 -11.10876 -10.85647 -10.47605 -10.31824 -10.02213 -9.75875 -8.55576 -7.81934 -5.33822 0.17881 1.20000 1.49858 1.50722 1.59217 1.65176 1.88237 2.09461 2.53864 3.15952 3.28428 3.40313 3.41703 3.71567 3.72669 3.83664 3.90479 3.98374 4.09092 4.10195 4.24183 4.28991 4.34841 4.39903 4.42145 4.49769 4.51285 4.59878 4.62756 4.69407 4.72324 4.77084 4.82927 4.85983 4.92480 4.94518 4.97718 4.98766 5.06609 5.15960 5.17218 5.22144 5.28943 5.37333 5.39893 5.56330 5.60348 5.70162 5.77334 5.88417 6.47533 6.55661 6.84189 7.09517 7.22165 7.91779 8.43287 9.22483 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.002293 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.061359 B =12209.878159 C =12545.583849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.123 3.877 4 H 0.114 0.886 5 C -0.151 4.151 6 N -0.259 5.259 7 N -0.289 5.289 8 C -0.007 4.007 9 C -0.180 4.180 10 C -0.058 4.058 11 C 0.611 3.389 12 O -0.583 6.583 13 N -0.625 5.625 14 C 0.112 3.888 15 C -0.074 4.074 16 C 0.115 3.885 17 C -0.092 4.092 18 C 0.144 3.856 19 N -0.608 5.608 20 C -0.259 4.259 21 H 0.063 0.937 22 C -0.048 4.048 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.282 1.282 26 H -0.298 1.298 27 H -0.271 1.271 28 C 0.175 3.825 29 C -0.108 4.108 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.101 0.899 38 H 0.219 0.781 39 H 0.186 0.814 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.050 0.950 47 H 0.004 0.996 48 H 0.249 0.751 49 H 0.058 0.942 50 H -0.005 1.005 51 H 0.068 0.932 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 -16.224 18.082 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.023 3.977 4 H 0.132 0.868 5 C -0.208 4.208 6 N -0.047 5.047 7 N -0.121 5.121 8 C -0.182 4.182 9 C -0.209 4.209 10 C -0.186 4.186 11 C 0.401 3.599 12 O -0.465 6.465 13 N -0.358 5.358 14 C -0.010 4.010 15 C -0.075 4.075 16 C -0.007 4.007 17 C -0.131 4.131 18 C 0.018 3.982 19 N -0.331 5.331 20 C -0.390 4.390 21 H 0.081 0.919 22 C -0.244 4.244 23 N -0.581 5.581 24 Si 0.794 3.206 25 H -0.209 1.209 26 H -0.225 1.225 27 H -0.196 1.196 28 C 0.049 3.951 29 C -0.147 4.147 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.236 0.764 39 H 0.203 0.797 40 H 0.123 0.877 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.022 0.978 48 H 0.058 0.942 49 H 0.077 0.923 50 H 0.013 0.987 51 H 0.087 0.913 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.099 -16.559 18.937 25.668 hybrid contribution 0.727 1.316 -1.615 2.207 sum -4.372 -15.243 17.322 23.484 Atomic orbital electron populations 1.21782 0.92485 1.03349 1.02850 1.21768 0.98272 0.93256 1.02511 1.22258 0.72675 1.00093 1.02693 0.86811 1.22091 1.03831 0.99847 0.95073 1.46154 1.07901 1.39935 1.10747 1.73105 1.02286 1.18896 1.17833 1.24198 0.94834 1.03063 0.96143 1.22878 0.94646 1.04103 0.99268 1.21323 0.93447 1.10314 0.93497 1.16626 0.84368 0.77334 0.81561 1.90693 1.15739 1.58495 1.81577 1.49258 1.11803 1.56495 1.18227 1.23509 0.79793 0.98352 0.99303 1.21509 0.94234 0.95048 0.96718 1.23166 0.97929 0.95077 0.84499 1.21520 1.01764 0.93190 0.96627 1.20977 0.93398 0.96770 0.87037 1.44238 1.53886 1.14079 1.20905 1.19482 1.20544 1.08358 0.90574 0.91913 1.25878 1.00594 1.00653 0.97225 1.70121 1.40236 1.46134 1.01609 0.85291 0.78915 0.79123 0.77236 1.20873 1.22466 1.19636 1.20654 0.96919 0.83916 0.93566 1.21847 0.99749 0.99004 0.94121 0.90583 0.90706 0.92851 0.90382 0.93104 0.90830 0.93319 0.88004 0.76449 0.79709 0.87731 0.86555 0.88399 0.92466 0.92140 0.90719 0.93179 0.97759 0.94161 0.92338 0.98706 0.91317 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 71.98 0.70 -1.32 16 2 C -0.12 -2.19 5.66 30.59 0.17 -2.02 16 3 C 0.12 2.74 3.02 44.99 0.14 2.87 16 4 H 0.11 3.08 5.32 -2.39 -0.01 3.07 16 5 C -0.15 -2.71 9.05 71.98 0.65 -2.06 16 6 N -0.26 -6.47 3.09 -314.30 -0.97 -7.44 16 7 N -0.29 -6.67 11.52 -57.14 -0.66 -7.33 16 8 C -0.01 -0.13 12.03 85.19 1.03 0.89 16 9 C -0.18 -3.56 10.18 22.66 0.23 -3.33 16 10 C -0.06 -1.51 6.95 40.79 0.28 -1.23 16 11 C 0.61 18.41 8.05 86.59 0.70 19.10 16 12 O -0.58 -21.08 15.16 -4.12 -0.06 -21.15 16 13 N -0.63 -16.53 3.46 -862.86 -2.99 -19.51 16 14 C 0.11 2.21 6.61 83.21 0.55 2.76 16 15 C -0.07 -2.01 0.83 -52.61 -0.04 -2.05 16 16 C 0.12 3.32 7.57 83.32 0.63 3.95 16 17 C -0.09 -2.81 5.25 30.57 0.16 -2.65 16 18 C 0.14 5.79 6.41 86.42 0.55 6.34 16 19 N -0.61 -29.04 2.95 -698.64 -2.06 -31.10 16 20 C -0.26 -13.78 9.56 84.04 0.80 -12.97 16 21 H 0.06 3.27 7.85 -2.91 -0.02 3.25 16 22 C -0.05 -2.61 5.05 84.86 0.43 -2.19 16 23 N -0.93 -53.84 11.02 21.65 0.24 -53.61 16 24 Si 0.97 43.84 29.57 68.60 2.03 45.87 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 C 0.17 7.76 5.22 86.42 0.45 8.21 16 29 C -0.11 -3.33 5.31 30.57 0.16 -3.16 16 30 H 0.08 0.82 6.57 -2.38 -0.02 0.80 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.34 6.56 -2.38 -0.02 1.32 16 38 H 0.22 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.19 2.64 5.18 -2.91 -0.02 2.63 16 40 H 0.10 1.64 5.67 -2.39 -0.01 1.63 16 41 H 0.12 1.78 8.09 -2.39 -0.02 1.76 16 42 H 0.10 2.60 8.06 -2.39 -0.02 2.58 16 43 H 0.06 1.93 7.53 -2.38 -0.02 1.91 16 44 H 0.06 1.76 7.95 -2.39 -0.02 1.74 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.05 2.02 7.92 -2.39 -0.02 2.00 16 47 H 0.00 0.19 7.60 -2.39 -0.02 0.17 16 48 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 49 H 0.06 3.00 6.00 -2.38 -0.01 2.99 16 50 H -0.01 -0.25 8.14 -2.38 -0.02 -0.27 16 51 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 52 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 Total: -1.00 -69.49 402.50 4.03 -65.47 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.91 Total: 17.66 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 7.59 Total: 11.15 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -6.44 Total: -119.00 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.06 Total: -21.15 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.49 4.03 -65.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050534430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.561 kcal (2) G-P(sol) polarization free energy of solvation -69.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds