Wall clock time and date at job start Wed Apr 1 2020 04:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46811 * 2 1 4 4 H 1.08997 * 109.47429 * 304.99683 * 3 2 1 5 5 C 1.53000 * 109.47447 * 65.00097 * 3 2 1 6 6 N 1.46506 * 109.47270 * 185.00058 * 3 2 1 7 7 N 1.28466 * 124.88356 * 300.02950 * 6 3 2 8 8 C 1.31812 * 110.07358 * 179.97438 * 7 6 3 9 9 C 1.47704 * 126.51559 * 179.97438 * 8 7 6 10 10 O 1.21571 * 119.99723 * 179.97438 * 9 8 7 11 11 N 1.34782 * 120.00400 * 359.97438 * 9 8 7 12 12 C 1.47343 * 125.51944 * 359.68688 * 11 9 8 13 13 C 1.55163 * 104.79370 * 156.69109 * 12 11 9 14 14 C 1.54784 * 101.36043 * 37.53922 * 13 12 11 15 15 H 1.08999 * 113.40330 * 85.63601 * 14 13 12 16 16 C 1.53513 * 109.69162 * 212.75988 * 14 13 12 17 17 N 1.46652 * 107.05167 * 84.08726 * 16 14 13 18 18 C 1.36931 * 125.28622 * 197.40256 * 17 16 14 19 19 H 1.08006 * 120.00367 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99822 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00075 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99932 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47210 * 90.00207 * 22 20 18 24 24 H 1.48505 * 109.47150 * 209.99839 * 22 20 18 25 25 H 1.48496 * 109.47105 * 329.99368 * 22 20 18 26 26 C 1.46489 * 109.42015 * 17.37915 * 17 16 14 27 27 C 1.47256 * 125.52251 * 179.97438 * 11 9 8 28 28 H 1.08995 * 111.95000 * 55.56951 * 27 11 9 29 29 C 1.41497 * 106.95996 * 359.97438 * 8 7 6 30 30 C 1.35034 * 124.88249 * 119.71675 * 6 3 2 31 31 C 1.50690 * 126.38945 * 0.02562 * 30 6 3 32 32 H 1.08996 * 109.47349 * 299.99960 * 1 2 3 33 33 H 1.09000 * 109.47352 * 60.00331 * 1 2 3 34 34 H 1.09003 * 109.46736 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.47236 * 240.00527 * 2 1 3 36 36 H 1.09000 * 109.47352 * 119.99669 * 2 1 3 37 37 H 1.09001 * 109.46895 * 59.99863 * 5 3 2 38 38 H 1.08990 * 109.47552 * 179.97438 * 5 3 2 39 39 H 1.09002 * 109.46958 * 300.00113 * 5 3 2 40 40 H 1.09001 * 110.35549 * 275.63581 * 12 11 9 41 41 H 1.08997 * 110.35648 * 37.92829 * 12 11 9 42 42 H 1.08997 * 111.21719 * 279.46651 * 13 12 11 43 43 H 1.09003 * 110.96597 * 155.50674 * 13 12 11 44 44 H 1.08999 * 109.91589 * 324.73126 * 16 14 13 45 45 H 1.08999 * 109.91960 * 203.44006 * 16 14 13 46 46 H 0.97003 * 119.99954 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.71131 * 238.31483 * 26 17 16 48 48 H 1.09002 * 109.67333 * 117.74786 * 26 17 16 49 49 H 1.08011 * 127.24370 * 180.02562 * 29 8 7 50 50 H 1.09010 * 109.47486 * 89.99452 * 31 30 6 51 51 H 1.09000 * 109.47515 * 209.99223 * 31 30 6 52 52 H 1.09000 * 109.47296 * 330.00110 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 7 3.5000 1.4444 -0.1204 7 7 4.3067 0.8917 0.7128 8 6 5.5529 1.0698 0.3221 9 6 6.7673 0.5867 1.0101 10 8 7.8646 0.8195 0.5416 11 7 6.6589 -0.1123 2.1574 12 6 5.3961 -0.4569 2.8339 13 6 5.7348 -1.7026 3.6947 14 6 7.1658 -1.3610 4.1756 15 1 7.1849 -0.7469 5.0759 16 6 7.9856 -2.6511 4.3176 17 7 8.5180 -2.9707 2.9891 18 6 9.0089 -4.1903 2.6061 19 1 9.0242 -5.0110 3.3081 20 6 9.4879 -4.3716 1.3160 21 7 9.4698 -3.3714 0.4607 22 14 10.1570 -6.0355 0.7933 23 1 9.0550 -6.8585 0.2334 24 1 11.2064 -5.8447 -0.2400 25 1 10.7416 -6.7260 1.9708 26 6 8.4426 -1.7828 2.1354 27 6 7.7836 -0.6503 2.9410 28 1 8.4988 0.1259 3.2131 29 6 5.5059 1.8120 -0.8817 30 6 4.1912 2.0222 -1.1263 31 6 3.6080 2.7652 -2.3004 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5137 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.0699 1.5876 2.1491 38 1 1.9988 3.1541 1.3075 39 1 0.5489 2.1253 1.3969 40 1 5.0685 0.3671 3.4678 41 1 4.6275 -0.7010 2.1006 42 1 5.7311 -2.6111 3.0924 43 1 5.0497 -1.7921 4.5378 44 1 7.3452 -3.4614 4.6660 45 1 8.8055 -2.4948 5.0186 46 1 9.8042 -3.4982 -0.4410 47 1 7.8431 -2.0024 1.2519 48 1 9.4463 -1.4835 1.8335 49 1 6.3428 2.1385 -1.4814 50 1 3.5105 3.8216 -2.0499 51 1 4.2655 2.6556 -3.1628 52 1 2.6260 2.3561 -2.5378 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075973721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:47 Heat of formation + Delta-G solvation = 76.877602 kcal Electronic energy + Delta-G solvation = -32047.655419 eV Core-core repulsion = 28049.860964 eV Total energy + Delta-G solvation = -3997.794455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.67963 -39.77305 -37.60678 -36.62908 -34.76151 -32.90851 -32.09457 -31.69949 -30.48635 -29.39466 -28.52925 -27.09675 -26.70162 -25.33786 -24.37915 -23.56391 -22.07356 -21.13384 -20.51197 -20.05825 -19.25339 -18.25515 -17.07973 -16.81876 -16.31511 -16.03347 -15.49062 -15.26336 -15.01229 -14.41722 -14.20521 -14.08557 -13.89479 -13.46368 -13.34705 -13.31935 -13.21028 -12.94264 -12.69211 -12.59337 -12.49023 -12.41631 -12.18383 -12.02721 -11.90665 -11.60815 -11.41827 -11.31593 -11.17344 -11.02489 -10.90127 -10.71366 -10.64257 -10.25565 -10.03986 -9.90816 -9.75004 -9.60621 -9.49015 -8.96942 -8.82596 -8.47990 -7.98071 -6.69860 -5.56610 -2.93389 1.81124 2.24831 2.37370 3.46457 3.48530 3.51483 3.54482 3.90060 4.06514 4.38178 4.48808 4.54887 4.59138 4.68125 4.80821 4.89170 4.95823 5.06348 5.09397 5.10606 5.23236 5.27289 5.37911 5.41286 5.51862 5.56888 5.59859 5.61226 5.62253 5.71482 5.76905 5.79956 5.84112 5.89682 5.93065 5.98909 6.06084 6.12376 6.21590 6.32317 6.51986 6.55033 6.70991 6.73001 6.79551 6.91158 7.00360 7.70431 7.75689 8.01794 8.03454 8.15675 8.41472 8.76283 9.34263 9.95348 10.58866 11.52477 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.003115 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.583394 B = 8987.523346 C = 9274.890362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.147 3.853 4 H 0.105 0.895 5 C -0.163 4.163 6 N -0.280 5.280 7 N -0.255 5.255 8 C 0.000 4.000 9 C 0.611 3.389 10 O -0.524 6.524 11 N -0.594 5.594 12 C 0.109 3.891 13 C -0.122 4.122 14 C -0.110 4.110 15 H 0.087 0.913 16 C 0.145 3.855 17 N -0.602 5.602 18 C -0.234 4.234 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.913 5.913 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.179 3.821 27 C 0.115 3.885 28 H 0.080 0.920 29 C -0.178 4.178 30 C 0.002 3.998 31 C -0.081 4.081 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.016 0.984 46 H 0.252 0.748 47 H 0.056 0.944 48 H 0.045 0.955 49 H 0.159 0.841 50 H 0.075 0.925 51 H 0.085 0.915 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.423 13.704 0.030 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.047 3.953 4 H 0.123 0.877 5 C -0.220 4.220 6 N -0.069 5.069 7 N -0.090 5.090 8 C -0.160 4.160 9 C 0.397 3.603 10 O -0.398 6.398 11 N -0.328 5.328 12 C -0.014 4.014 13 C -0.160 4.160 14 C -0.130 4.130 15 H 0.105 0.895 16 C 0.019 3.981 17 N -0.329 5.329 18 C -0.362 4.362 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.559 5.559 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.054 3.946 27 C 0.012 3.988 28 H 0.098 0.902 29 C -0.206 4.206 30 C -0.122 4.122 31 C -0.140 4.140 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.034 0.966 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.177 0.823 50 H 0.094 0.906 51 H 0.104 0.896 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.477 13.305 0.353 25.267 hybrid contribution 0.821 -0.516 -1.012 1.402 sum -20.656 12.789 -0.659 24.303 Atomic orbital electron populations 1.21790 0.94205 1.02693 1.02093 1.21887 0.96645 0.94469 1.04274 1.21624 0.74057 0.98846 1.00812 0.87728 1.22175 1.02347 1.00965 0.96532 1.45674 1.06913 1.38179 1.16178 1.73566 1.00417 1.17294 1.17688 1.21952 0.91080 1.04979 0.97999 1.16474 0.86418 0.78002 0.79376 1.90822 1.26389 1.57772 1.64835 1.48334 1.08467 1.53279 1.22695 1.22396 0.86937 0.96240 0.95840 1.22806 0.95706 0.98331 0.99131 1.22948 0.95559 0.97764 0.96738 0.89459 1.21065 0.94347 0.93092 0.89622 1.44138 1.72872 1.08822 1.07086 1.18992 1.34244 0.87002 0.95942 0.90442 1.24846 1.01407 0.97601 0.96445 1.70019 1.51275 1.29321 1.05302 0.86160 0.78346 0.83357 0.78118 1.21737 1.21703 1.20720 1.21262 0.98947 0.82705 0.91686 1.22883 0.88168 0.96634 0.91151 0.90159 1.21501 0.95654 1.04795 0.98633 1.21318 0.92005 1.04018 0.94818 1.20313 1.00892 0.98966 0.93787 0.91980 0.92518 0.91785 0.91150 0.89976 0.90635 0.91984 0.90218 0.92361 0.89608 0.89713 0.90804 0.94434 0.96631 0.93715 0.92596 0.93729 0.82300 0.90642 0.89618 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.67 37.16 0.36 -0.44 16 2 C -0.13 -1.06 5.58 -26.73 -0.15 -1.21 16 3 C 0.15 1.17 3.02 -67.93 -0.21 0.96 16 4 H 0.10 0.59 6.55 -51.93 -0.34 0.25 16 5 C -0.16 -1.12 9.12 37.16 0.34 -0.78 16 6 N -0.28 -3.35 3.04 -50.66 -0.15 -3.51 16 7 N -0.25 -3.84 8.75 33.42 0.29 -3.55 16 8 C 0.00 0.00 6.96 -82.77 -0.58 -0.57 16 9 C 0.61 13.03 7.57 -12.39 -0.09 12.94 16 10 O -0.52 -13.01 17.01 5.30 0.09 -12.92 16 11 N -0.59 -11.86 2.83 -162.86 -0.46 -12.32 16 12 C 0.11 1.76 6.12 -2.44 -0.01 1.74 16 13 C -0.12 -1.96 6.33 -24.65 -0.16 -2.12 16 14 C -0.11 -1.97 3.97 -88.21 -0.35 -2.32 16 15 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 16 C 0.15 3.07 6.50 -3.69 -0.02 3.04 16 17 N -0.60 -16.08 3.37 -172.31 -0.58 -16.66 16 18 C -0.23 -6.76 10.25 -15.06 -0.15 -6.91 16 19 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 21 N -0.91 -28.70 10.23 55.49 0.57 -28.13 16 22 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 26 C 0.18 4.80 4.63 -3.63 -0.02 4.78 16 27 C 0.11 2.44 3.80 -65.89 -0.25 2.19 16 28 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 29 C -0.18 -2.74 10.73 -39.37 -0.42 -3.16 16 30 C 0.00 0.02 6.92 -82.21 -0.57 -0.54 16 31 C -0.08 -0.59 9.92 36.00 0.36 -0.24 16 32 H 0.06 0.28 6.56 -51.93 -0.34 -0.06 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.36 6.57 -51.93 -0.34 0.02 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.39 6.23 -51.93 -0.32 1.06 16 42 H 0.08 1.62 7.93 -51.93 -0.41 1.21 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.04 0.76 7.95 -51.93 -0.41 0.35 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 47 H 0.06 1.70 6.89 -51.93 -0.36 1.35 16 48 H 0.04 1.37 7.51 -51.93 -0.39 0.98 16 49 H 0.16 2.35 8.06 -52.48 -0.42 1.92 16 50 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 51 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.07 0.37 7.03 -51.93 -0.37 0.01 16 LS Contribution 405.95 15.07 6.12 6.12 Total: -1.00 -36.40 405.95 -9.92 -46.33 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.75 Total: -0.46 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -2.02 Total: 7.10 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -0.34 Total: -64.16 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.40 -9.92 -46.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075973721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.203 kcal (2) G-P(sol) polarization free energy of solvation -36.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds