Wall clock time and date at job start Wed Apr 1 2020 04:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46740 * 2 1 4 4 N 1.46504 * 109.46561 * 180.02562 * 3 2 1 5 5 N 1.39929 * 125.75715 * 90.02725 * 4 3 2 6 6 C 1.30456 * 108.89708 * 179.97438 * 5 4 3 7 7 C 1.41287 * 108.01914 * 359.97438 * 6 5 4 8 8 C 1.47436 * 126.41159 * 179.97438 * 7 6 5 9 9 O 1.21608 * 119.99911 * 233.23207 * 8 7 6 10 10 N 1.34773 * 119.99883 * 53.22999 * 8 7 6 11 11 C 1.46498 * 120.00003 * 5.18403 * 10 8 7 12 12 C 1.46501 * 119.99574 * 185.18358 * 10 8 7 13 13 C 1.53001 * 109.46912 * 97.23124 * 12 10 8 14 14 H 1.08990 * 113.04293 * 50.65451 * 13 12 10 15 15 C 1.53948 * 113.76712 * 182.40779 * 13 12 10 16 16 C 1.53942 * 86.29381 * 137.90275 * 15 13 12 17 17 N 1.47587 * 86.23870 * 336.33594 * 16 15 13 18 18 C 1.36938 * 134.49446 * 204.69266 * 17 16 15 19 19 H 1.07998 * 120.00058 * 192.11738 * 18 17 16 20 20 C 1.38812 * 119.99560 * 12.11729 * 18 17 16 21 21 N 1.31619 * 120.00536 * 5.63637 * 20 18 17 22 22 Si 1.86805 * 119.99706 * 185.63511 * 20 18 17 23 23 H 1.48497 * 109.47093 * 355.00496 * 22 20 18 24 24 H 1.48504 * 109.46730 * 115.00348 * 22 20 18 25 25 H 1.48497 * 109.47183 * 235.00255 * 22 20 18 26 26 C 1.34263 * 125.74817 * 270.26814 * 4 3 2 27 27 C 1.50698 * 126.29592 * 0.03667 * 26 4 3 28 28 C 1.52996 * 117.50123 * 196.75619 * 27 26 4 29 29 C 1.52992 * 117.50077 * 128.09231 * 27 26 4 30 30 H 1.08997 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46786 * 299.99385 * 1 2 3 32 32 H 1.08992 * 109.47694 * 59.99829 * 1 2 3 33 33 H 1.09001 * 109.46563 * 240.00305 * 2 1 3 34 34 H 1.08997 * 109.47247 * 120.00068 * 2 1 3 35 35 H 1.08995 * 109.47047 * 60.00475 * 3 2 1 36 36 H 1.08997 * 109.47306 * 300.00033 * 3 2 1 37 37 H 1.07992 * 125.98500 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.47330 * 275.37424 * 11 10 8 39 39 H 1.08995 * 109.47409 * 35.37664 * 11 10 8 40 40 H 1.09004 * 109.46895 * 155.37592 * 11 10 8 41 41 H 1.08997 * 109.47369 * 337.22736 * 12 10 8 42 42 H 1.09003 * 109.47051 * 217.22654 * 12 10 8 43 43 H 1.09001 * 113.74181 * 23.55711 * 15 13 12 44 44 H 1.09001 * 113.73992 * 252.25044 * 15 13 12 45 45 H 1.08998 * 113.77112 * 90.68815 * 16 15 13 46 46 H 1.08994 * 113.77452 * 221.97912 * 16 15 13 47 47 H 0.96999 * 120.00375 * 179.97438 * 21 20 18 48 48 H 1.09006 * 115.54803 * 342.42373 * 27 26 4 49 49 H 1.09002 * 117.49606 * 359.97438 * 28 27 26 50 50 H 1.08997 * 117.49906 * 145.01826 * 28 27 26 51 51 H 1.09001 * 117.50210 * 214.97956 * 29 27 26 52 52 H 1.08999 * 117.49933 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3222 1.4432 -1.1365 6 6 5.5709 1.4434 -0.7586 7 6 5.6000 1.4435 0.6539 8 6 6.8044 1.4433 1.5044 9 8 6.9372 0.5997 2.3701 10 7 7.7581 2.3780 1.3223 11 6 7.5478 3.4608 0.3582 12 6 9.0049 2.3112 2.0885 13 6 10.0873 1.6365 1.2434 14 1 10.1846 2.0712 0.2487 15 6 11.4288 1.4615 1.9780 16 6 11.4784 0.0592 1.3449 17 7 10.0094 0.1592 1.2437 18 6 8.9877 -0.7502 1.1780 19 1 7.9926 -0.4261 0.9114 20 6 9.2312 -2.0886 1.4541 21 7 10.4156 -2.4667 1.8861 22 14 7.8778 -3.3533 1.2125 23 1 6.6168 -2.6637 0.8391 24 1 8.2666 -4.2939 0.1310 25 1 7.6742 -4.1078 2.4752 26 6 4.2899 1.4372 1.0887 27 6 3.8259 1.4295 2.5225 28 6 4.8445 1.8157 3.5967 29 6 4.4054 0.3570 3.4468 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 6.4313 1.4436 -1.4112 38 1 7.8303 3.1203 -0.6380 39 1 6.4967 3.7492 0.3591 40 1 8.1602 4.3187 0.6361 41 1 8.8417 1.7337 2.9984 42 1 9.3247 3.3197 2.3508 43 1 11.3362 1.4497 3.0640 44 1 12.2133 2.1306 1.6244 45 1 11.9842 0.0304 0.3798 46 1 11.8197 -0.7192 2.0273 47 1 10.5857 -3.4019 2.0793 48 1 2.7890 1.7252 2.6826 49 1 5.8504 2.0749 3.2665 50 1 4.4778 2.3650 4.4638 51 1 3.7501 -0.0528 4.2154 52 1 5.1220 -0.3434 3.0178 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085916144.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:47 Heat of formation + Delta-G solvation = 140.192998 kcal Electronic energy + Delta-G solvation = -32782.747933 eV Core-core repulsion = 28787.699039 eV Total energy + Delta-G solvation = -3995.048893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.46652 -39.12131 -37.54807 -36.72150 -35.51626 -34.67937 -31.91880 -31.64163 -30.04514 -28.34525 -27.60666 -26.63138 -25.87263 -23.79722 -23.09790 -22.43723 -22.26273 -22.17351 -21.14284 -19.77386 -18.88492 -18.40993 -17.36625 -16.71017 -16.16218 -15.76915 -15.18720 -15.12326 -14.92859 -14.73099 -14.47036 -14.34701 -13.69147 -13.64797 -13.46461 -13.42843 -13.01251 -12.69871 -12.60922 -12.45448 -12.26031 -12.04080 -11.68471 -11.48516 -11.36491 -11.28442 -11.20877 -11.09675 -10.92021 -10.87037 -10.70103 -10.66637 -10.52660 -10.35096 -10.22759 -9.78996 -9.50762 -9.23715 -9.11924 -9.00497 -8.49238 -8.22568 -7.92465 -6.54446 -5.46776 -2.79734 1.73669 2.38457 2.58770 3.54350 3.56549 3.61829 3.65806 3.68038 4.05557 4.33852 4.42781 4.57484 4.68475 4.79963 4.86408 4.94622 4.95578 5.09840 5.15013 5.18013 5.27063 5.35576 5.42872 5.44658 5.64758 5.65988 5.67924 5.69339 5.74151 5.79176 5.84298 5.85877 5.92070 5.93277 5.98202 6.08025 6.11178 6.13522 6.31744 6.46607 6.52501 6.58980 6.63654 6.81691 6.88413 6.96806 7.17477 7.44048 7.66700 7.74757 7.87666 8.02222 8.31852 8.94689 9.35355 10.02364 10.87461 11.68751 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.004308 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.381976 B = 6498.404348 C = 7546.584192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.134 3.866 4 N -0.362 5.362 5 N -0.302 5.302 6 C 0.088 3.912 7 C -0.274 4.274 8 C 0.588 3.412 9 O -0.489 6.489 10 N -0.610 5.610 11 C 0.089 3.911 12 C 0.118 3.882 13 C 0.123 3.877 14 H 0.042 0.958 15 C -0.155 4.155 16 C 0.141 3.859 17 N -0.595 5.595 18 C -0.184 4.184 19 H 0.086 0.914 20 C -0.012 4.012 21 N -0.927 5.927 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.298 1.298 25 H -0.294 1.294 26 C 0.168 3.832 27 C -0.124 4.124 28 C -0.159 4.159 29 C -0.146 4.146 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.187 0.813 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.047 0.953 45 H 0.017 0.983 46 H 0.084 0.916 47 H 0.246 0.754 48 H 0.111 0.889 49 H 0.113 0.887 50 H 0.093 0.907 51 H 0.093 0.907 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 14.305 -0.896 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.012 3.988 4 N -0.142 5.142 5 N -0.121 5.121 6 C -0.099 4.099 7 C -0.289 4.289 8 C 0.375 3.625 9 O -0.363 6.363 10 N -0.344 5.344 11 C -0.055 4.055 12 C -0.005 4.005 13 C 0.015 3.985 14 H 0.059 0.941 15 C -0.194 4.194 16 C 0.015 3.985 17 N -0.320 5.320 18 C -0.312 4.312 19 H 0.104 0.896 20 C -0.206 4.206 21 N -0.576 5.576 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.226 1.226 25 H -0.221 1.221 26 C 0.037 3.963 27 C -0.144 4.144 28 C -0.196 4.196 29 C -0.184 4.184 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.204 0.796 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.103 0.897 47 H 0.056 0.944 48 H 0.129 0.871 49 H 0.131 0.869 50 H 0.112 0.888 51 H 0.112 0.888 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.104 13.538 -1.439 21.087 hybrid contribution -0.156 -0.786 0.087 0.806 sum -16.260 12.752 -1.352 20.708 Atomic orbital electron populations 1.21685 0.94329 1.02512 1.02002 1.21961 0.96549 0.95837 1.03914 1.21762 0.74264 0.98558 1.04174 1.48277 1.06243 1.56564 1.03128 1.77125 1.01846 1.25933 1.07208 1.23928 0.94976 0.97222 0.93774 1.20062 0.92930 1.21927 0.93982 1.17022 0.81432 0.80900 0.83103 1.90876 1.77095 1.35283 1.33069 1.47543 1.17640 1.27090 1.42162 1.21620 1.01268 0.89837 0.92747 1.21896 0.82824 0.99528 0.96272 1.22741 0.92516 0.87664 0.95564 0.94086 1.23739 0.95976 0.99546 1.00156 1.22388 0.85743 0.93662 0.96662 1.45995 1.01983 0.98553 1.85515 1.19238 0.88564 0.87001 1.36421 0.89607 1.24669 0.96489 0.97244 1.02237 1.69818 1.20942 1.14964 1.51852 0.86170 0.81891 0.81844 0.76887 1.20446 1.22616 1.22128 1.20397 0.89654 0.97347 0.88877 1.20472 0.98726 1.09687 0.85504 1.23253 0.99678 0.98865 0.97819 1.23283 1.02535 0.93050 0.99518 0.91940 0.92409 0.92342 0.90807 0.90984 0.89118 0.88673 0.79646 0.93286 0.92083 0.91542 0.88777 0.91981 0.90733 0.93487 0.96557 0.89743 0.94408 0.87087 0.86920 0.88827 0.88848 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.14 -1.38 6.26 -26.73 -0.17 -1.54 16 3 C 0.13 1.30 6.21 -4.04 -0.03 1.27 16 4 N -0.36 -5.08 3.58 -56.60 -0.20 -5.29 16 5 N -0.30 -4.80 12.50 30.86 0.39 -4.42 16 6 C 0.09 1.44 10.73 -16.98 -0.18 1.26 16 7 C -0.27 -4.76 4.61 -105.06 -0.48 -5.25 16 8 C 0.59 11.26 3.53 -12.52 -0.04 11.22 16 9 O -0.49 -11.13 9.67 5.27 0.05 -11.08 16 10 N -0.61 -10.28 2.88 -182.85 -0.53 -10.81 16 11 C 0.09 1.13 9.40 59.85 0.56 1.69 16 12 C 0.12 2.09 5.42 -4.04 -0.02 2.07 16 13 C 0.12 2.48 4.54 -66.67 -0.30 2.17 16 14 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.16 -2.98 7.86 -25.79 -0.20 -3.18 16 16 C 0.14 3.41 7.91 -2.97 -0.02 3.39 16 17 N -0.59 -15.39 3.56 -169.65 -0.60 -15.99 16 18 C -0.18 -5.32 9.07 -15.06 -0.14 -5.46 16 19 H 0.09 2.49 4.69 -52.49 -0.25 2.24 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 21 N -0.93 -28.97 11.29 55.49 0.63 -28.34 16 22 Si 0.90 24.54 29.56 -169.99 -5.02 19.52 16 23 H -0.28 -7.60 7.11 56.52 0.40 -7.20 16 24 H -0.30 -8.11 7.11 56.52 0.40 -7.71 16 25 H -0.29 -8.06 7.11 56.52 0.40 -7.66 16 26 C 0.17 2.57 6.66 -81.60 -0.54 2.03 16 27 C -0.12 -1.63 5.94 -91.78 -0.55 -2.17 16 28 C -0.16 -2.21 9.46 -26.70 -0.25 -2.46 16 29 C -0.15 -2.18 9.57 -26.70 -0.26 -2.44 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.68 7.13 -51.93 -0.37 0.31 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.19 2.79 7.78 -52.49 -0.41 2.38 16 38 H 0.05 0.61 7.78 -51.93 -0.40 0.21 16 39 H 0.06 0.74 7.07 -51.93 -0.37 0.37 16 40 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 41 H 0.09 1.97 7.16 -51.93 -0.37 1.60 16 42 H 0.06 0.88 7.98 -51.93 -0.41 0.46 16 43 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 2.30 6.64 -51.93 -0.34 1.96 16 47 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.11 1.12 7.22 -51.93 -0.38 0.75 16 49 H 0.11 1.87 4.55 -51.93 -0.24 1.63 16 50 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 52 H 0.12 2.41 6.32 -51.93 -0.33 2.08 16 LS Contribution 405.15 15.07 6.11 6.11 Total: -1.00 -35.82 405.15 -10.03 -45.84 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -8.48 Total: 2.93 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -2.35 Total: 1.53 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -0.32 Total: -64.84 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.05 Total: -11.08 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.02 Total: 19.52 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.82 -10.03 -45.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085916144.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.038 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds