Wall clock time and date at job start Wed Apr 1 2020 04:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46740 * 2 1 4 4 N 1.46504 * 109.46561 * 180.02562 * 3 2 1 5 5 N 1.39929 * 125.75715 * 90.02725 * 4 3 2 6 6 C 1.30456 * 108.89708 * 179.97438 * 5 4 3 7 7 C 1.41287 * 108.01914 * 359.97438 * 6 5 4 8 8 C 1.47436 * 126.41159 * 179.97438 * 7 6 5 9 9 O 1.21608 * 119.99911 * 233.23207 * 8 7 6 10 10 N 1.34773 * 119.99883 * 53.22999 * 8 7 6 11 11 C 1.46498 * 120.00003 * 5.18403 * 10 8 7 12 12 C 1.46501 * 119.99574 * 185.18358 * 10 8 7 13 13 C 1.53001 * 109.46912 * 97.23124 * 12 10 8 14 14 H 1.08990 * 113.04293 * 50.65451 * 13 12 10 15 15 C 1.53948 * 113.76712 * 182.40779 * 13 12 10 16 16 C 1.53942 * 86.29381 * 137.90275 * 15 13 12 17 17 N 1.47587 * 86.23870 * 336.33594 * 16 15 13 18 18 C 1.36938 * 134.49446 * 204.69266 * 17 16 15 19 19 H 1.07998 * 120.00058 * 192.11738 * 18 17 16 20 20 C 1.38812 * 119.99560 * 12.11729 * 18 17 16 21 21 N 1.31619 * 120.00536 * 5.63637 * 20 18 17 22 22 Si 1.86805 * 119.99706 * 185.63511 * 20 18 17 23 23 H 1.48497 * 109.47093 * 355.00496 * 22 20 18 24 24 H 1.48504 * 109.46730 * 115.00348 * 22 20 18 25 25 H 1.48497 * 109.47183 * 235.00255 * 22 20 18 26 26 C 1.34263 * 125.74817 * 270.26814 * 4 3 2 27 27 C 1.50698 * 126.29592 * 0.03667 * 26 4 3 28 28 C 1.52996 * 117.50123 * 196.75619 * 27 26 4 29 29 C 1.52992 * 117.50077 * 128.09231 * 27 26 4 30 30 H 1.08997 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46786 * 299.99385 * 1 2 3 32 32 H 1.08992 * 109.47694 * 59.99829 * 1 2 3 33 33 H 1.09001 * 109.46563 * 240.00305 * 2 1 3 34 34 H 1.08997 * 109.47247 * 120.00068 * 2 1 3 35 35 H 1.08995 * 109.47047 * 60.00475 * 3 2 1 36 36 H 1.08997 * 109.47306 * 300.00033 * 3 2 1 37 37 H 1.07992 * 125.98500 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.47330 * 275.37424 * 11 10 8 39 39 H 1.08995 * 109.47409 * 35.37664 * 11 10 8 40 40 H 1.09004 * 109.46895 * 155.37592 * 11 10 8 41 41 H 1.08997 * 109.47369 * 337.22736 * 12 10 8 42 42 H 1.09003 * 109.47051 * 217.22654 * 12 10 8 43 43 H 1.09001 * 113.74181 * 23.55711 * 15 13 12 44 44 H 1.09001 * 113.73992 * 252.25044 * 15 13 12 45 45 H 1.08998 * 113.77112 * 90.68815 * 16 15 13 46 46 H 1.08994 * 113.77452 * 221.97912 * 16 15 13 47 47 H 0.96999 * 120.00375 * 179.97438 * 21 20 18 48 48 H 1.09006 * 115.54803 * 342.42373 * 27 26 4 49 49 H 1.09002 * 117.49606 * 359.97438 * 28 27 26 50 50 H 1.08997 * 117.49906 * 145.01826 * 28 27 26 51 51 H 1.09001 * 117.50210 * 214.97956 * 29 27 26 52 52 H 1.08999 * 117.49933 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3222 1.4432 -1.1365 6 6 5.5709 1.4434 -0.7586 7 6 5.6000 1.4435 0.6539 8 6 6.8044 1.4433 1.5044 9 8 6.9372 0.5997 2.3701 10 7 7.7581 2.3780 1.3223 11 6 7.5478 3.4608 0.3582 12 6 9.0049 2.3112 2.0885 13 6 10.0873 1.6365 1.2434 14 1 10.1846 2.0712 0.2487 15 6 11.4288 1.4615 1.9780 16 6 11.4784 0.0592 1.3449 17 7 10.0094 0.1592 1.2437 18 6 8.9877 -0.7502 1.1780 19 1 7.9926 -0.4261 0.9114 20 6 9.2312 -2.0886 1.4541 21 7 10.4156 -2.4667 1.8861 22 14 7.8778 -3.3533 1.2125 23 1 6.6168 -2.6637 0.8391 24 1 8.2666 -4.2939 0.1310 25 1 7.6742 -4.1078 2.4752 26 6 4.2899 1.4372 1.0887 27 6 3.8259 1.4295 2.5225 28 6 4.8445 1.8157 3.5967 29 6 4.4054 0.3570 3.4468 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 6.4313 1.4436 -1.4112 38 1 7.8303 3.1203 -0.6380 39 1 6.4967 3.7492 0.3591 40 1 8.1602 4.3187 0.6361 41 1 8.8417 1.7337 2.9984 42 1 9.3247 3.3197 2.3508 43 1 11.3362 1.4497 3.0640 44 1 12.2133 2.1306 1.6244 45 1 11.9842 0.0304 0.3798 46 1 11.8197 -0.7192 2.0273 47 1 10.5857 -3.4019 2.0793 48 1 2.7890 1.7252 2.6826 49 1 5.8504 2.0749 3.2665 50 1 4.4778 2.3650 4.4638 51 1 3.7501 -0.0528 4.2154 52 1 5.1220 -0.3434 3.0178 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085916144.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:45 Heat of formation + Delta-G solvation = 117.754807 kcal Electronic energy + Delta-G solvation = -32783.720926 eV Core-core repulsion = 28787.699039 eV Total energy + Delta-G solvation = -3996.021886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.65092 -40.56999 -39.19806 -37.89617 -36.36714 -36.09518 -34.07786 -32.64003 -31.31653 -29.86321 -29.50547 -27.59997 -27.04554 -25.15912 -25.02376 -23.86424 -23.34915 -23.08957 -22.34176 -20.97091 -20.69175 -19.65864 -18.66774 -18.53807 -17.37773 -17.15204 -16.77508 -16.35230 -16.05399 -15.97772 -15.81070 -15.69270 -15.47309 -15.06847 -14.80020 -14.63034 -14.26067 -14.02745 -13.92353 -13.41203 -13.19530 -13.18169 -13.03990 -12.95229 -12.88430 -12.68149 -12.58819 -12.39017 -12.31439 -12.30237 -12.20119 -12.10796 -11.95703 -11.71375 -11.68436 -11.37742 -11.32091 -11.16418 -10.75807 -10.48313 -10.22403 -9.49050 -9.33773 -8.63356 -7.74693 -5.04894 0.54851 1.27598 1.32550 1.35626 1.37967 1.45625 2.19238 2.33971 2.52901 2.96698 3.34763 3.41144 3.46990 3.51637 3.80572 3.84962 3.91902 3.93399 4.06373 4.06778 4.11782 4.23206 4.35731 4.38684 4.43101 4.48458 4.50796 4.55161 4.63024 4.69226 4.76661 4.77856 4.80067 4.82766 4.95806 4.98446 5.01672 5.07367 5.09101 5.13013 5.19997 5.23483 5.30755 5.35943 5.40925 5.48815 5.73368 5.84814 5.90994 5.92315 6.15903 6.54464 6.67394 7.11053 7.55951 7.80157 8.72956 9.40801 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.004308 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.381976 B = 6498.404348 C = 7546.584192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.140 4.140 3 C 0.124 3.876 4 N -0.354 5.354 5 N -0.314 5.314 6 C 0.079 3.921 7 C -0.303 4.303 8 C 0.587 3.413 9 O -0.538 6.538 10 N -0.610 5.610 11 C 0.087 3.913 12 C 0.126 3.874 13 C 0.126 3.874 14 H 0.060 0.940 15 C -0.125 4.125 16 C 0.128 3.872 17 N -0.626 5.626 18 C -0.160 4.160 19 H 0.081 0.919 20 C -0.075 4.075 21 N -0.957 5.957 22 Si 0.947 3.053 23 H -0.285 1.285 24 H -0.297 1.297 25 H -0.299 1.299 26 C 0.166 3.834 27 C -0.107 4.107 28 C -0.156 4.156 29 C -0.162 4.162 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.191 0.809 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.018 0.982 46 H 0.046 0.954 47 H 0.237 0.763 48 H 0.153 0.847 49 H 0.084 0.916 50 H 0.126 0.874 51 H 0.120 0.880 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.196 17.844 -1.034 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.179 4.179 3 C 0.004 3.996 4 N -0.133 5.133 5 N -0.133 5.133 6 C -0.108 4.108 7 C -0.317 4.317 8 C 0.375 3.625 9 O -0.415 6.415 10 N -0.343 5.343 11 C -0.055 4.055 12 C 0.002 3.998 13 C 0.020 3.980 14 H 0.078 0.922 15 C -0.164 4.164 16 C 0.003 3.997 17 N -0.352 5.352 18 C -0.289 4.289 19 H 0.099 0.901 20 C -0.266 4.266 21 N -0.610 5.610 22 Si 0.780 3.220 23 H -0.210 1.210 24 H -0.225 1.225 25 H -0.227 1.227 26 C 0.034 3.966 27 C -0.126 4.126 28 C -0.193 4.193 29 C -0.199 4.199 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.207 0.793 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.129 0.871 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.035 0.965 46 H 0.065 0.935 47 H 0.046 0.954 48 H 0.171 0.829 49 H 0.102 0.898 50 H 0.144 0.856 51 H 0.138 0.862 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.268 17.147 -1.627 25.108 hybrid contribution 0.470 -1.774 0.074 1.837 sum -17.798 15.374 -1.553 23.569 Atomic orbital electron populations 1.21652 0.91793 1.02941 1.03447 1.21910 0.98638 0.95359 1.01955 1.22233 0.71700 0.99046 1.06581 1.48636 1.07597 1.54949 1.02157 1.77060 1.01841 1.26122 1.08322 1.24010 0.95481 0.97683 0.93581 1.20105 0.93325 1.24068 0.94244 1.17347 0.82158 0.80459 0.82513 1.90861 1.78249 1.37276 1.35108 1.47652 1.16728 1.27471 1.42454 1.21830 1.02448 0.89409 0.91796 1.21726 0.82596 1.01201 0.94284 1.22984 0.93822 0.84354 0.96849 0.92212 1.23472 0.96655 0.96512 0.99770 1.22405 0.84952 0.95961 0.96397 1.46395 1.02143 1.01303 1.85309 1.19395 0.89186 0.87462 1.32875 0.90114 1.25225 0.98010 0.98995 1.04413 1.69972 1.22115 1.14348 1.54563 0.85408 0.79974 0.80267 0.76371 1.21042 1.22522 1.22724 1.20743 0.89374 0.96305 0.90226 1.20669 1.00419 1.07787 0.83755 1.23225 0.98745 0.98138 0.99205 1.23118 1.02762 0.92951 1.01106 0.92093 0.90572 0.91254 0.93287 0.92506 0.85862 0.87117 0.79266 0.93105 0.91549 0.88319 0.92526 0.87126 0.90785 0.88935 0.96473 0.93533 0.95354 0.82903 0.89772 0.85631 0.86179 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.91 71.98 0.71 -0.79 16 2 C -0.14 -2.44 6.26 30.60 0.19 -2.25 16 3 C 0.12 2.04 6.21 86.38 0.54 2.58 16 4 N -0.35 -9.36 3.58 -333.00 -1.19 -10.55 16 5 N -0.31 -9.75 12.50 -56.28 -0.70 -10.45 16 6 C 0.08 2.58 10.73 85.65 0.92 3.50 16 7 C -0.30 -10.51 4.61 -20.15 -0.09 -10.60 16 8 C 0.59 22.76 3.53 86.67 0.31 23.06 16 9 O -0.54 -25.55 9.67 -4.06 -0.04 -25.59 16 10 N -0.61 -19.85 2.88 -850.65 -2.45 -22.30 16 11 C 0.09 1.99 9.40 127.77 1.20 3.19 16 12 C 0.13 4.23 5.42 86.38 0.47 4.70 16 13 C 0.13 4.84 4.54 45.03 0.20 5.04 16 14 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 15 C -0.13 -4.53 7.86 31.25 0.25 -4.29 16 16 C 0.13 6.27 7.91 86.48 0.68 6.96 16 17 N -0.63 -32.77 3.56 -690.64 -2.46 -35.23 16 18 C -0.16 -9.52 9.07 84.03 0.76 -8.76 16 19 H 0.08 4.86 4.69 -2.91 -0.01 4.85 16 20 C -0.08 -4.76 5.49 84.86 0.47 -4.30 16 21 N -0.96 -62.63 11.29 21.65 0.24 -62.39 16 22 Si 0.95 53.10 29.56 68.60 2.03 55.12 16 23 H -0.28 -15.96 7.11 99.48 0.71 -15.25 16 24 H -0.30 -16.36 7.11 99.48 0.71 -15.65 16 25 H -0.30 -16.82 7.11 99.48 0.71 -16.12 16 26 C 0.17 4.90 6.66 42.14 0.28 5.18 16 27 C -0.11 -2.58 5.94 -11.54 -0.07 -2.65 16 28 C -0.16 -4.14 9.46 30.62 0.29 -3.85 16 29 C -0.16 -4.79 9.57 30.62 0.29 -4.50 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.12 1.27 7.13 -2.39 -0.02 1.25 16 36 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.19 5.75 7.78 -2.91 -0.02 5.72 16 38 H 0.05 1.15 7.78 -2.39 -0.02 1.13 16 39 H 0.07 1.46 7.07 -2.39 -0.02 1.45 16 40 H 0.10 1.61 7.91 -2.38 -0.02 1.59 16 41 H 0.06 2.38 7.16 -2.39 -0.02 2.37 16 42 H 0.11 2.67 7.98 -2.39 -0.02 2.65 16 43 H 0.07 2.70 8.10 -2.39 -0.02 2.68 16 44 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.05 2.64 6.64 -2.39 -0.02 2.62 16 47 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 48 H 0.15 2.38 7.22 -2.38 -0.02 2.36 16 49 H 0.08 2.80 4.55 -2.39 -0.01 2.79 16 50 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 51 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 52 H 0.07 3.01 6.32 -2.39 -0.02 3.00 16 Total: -1.00 -84.70 405.15 3.74 -80.95 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.91 Total: 18.22 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 7.40 Total: 12.22 kcal Atomic # 7 Polarization: -134.36 SS G_CDS: -6.56 Total: -140.92 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.04 Total: -25.59 kcal Atomic # 14 Polarization: 53.10 SS G_CDS: 2.03 Total: 55.12 kcal Total: -84.70 3.74 -80.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085916144.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.709 kcal (2) G-P(sol) polarization free energy of solvation -84.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds