Wall clock time and date at job start Wed Apr 1 2020 04:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47419 * 2 1 4 4 H 1.09003 * 109.46908 * 54.58426 * 3 2 1 5 5 C 1.53002 * 109.47112 * 294.58821 * 3 2 1 6 6 N 1.46494 * 109.47800 * 174.58497 * 3 2 1 7 7 N 1.28452 * 125.18639 * 54.87723 * 6 3 2 8 8 C 1.30866 * 110.92606 * 179.73713 * 7 6 3 9 9 C 1.39670 * 107.86333 * 0.02562 * 8 7 6 10 10 C 1.36595 * 125.19666 * 234.57762 * 6 3 2 11 11 C 1.47165 * 126.88366 * 0.26277 * 10 6 3 12 12 O 1.21636 * 119.99879 * 6.27217 * 11 10 6 13 13 N 1.34768 * 120.00343 * 186.27672 * 11 10 6 14 14 C 1.47380 * 125.74141 * 185.83067 * 13 11 10 15 15 C 1.55418 * 106.74183 * 179.06423 * 14 13 11 16 16 H 1.08990 * 112.76536 * 146.41604 * 15 14 13 17 17 C 1.52919 * 106.56617 * 270.29197 * 15 14 13 18 18 C 1.51877 * 111.49742 * 169.08367 * 17 15 14 19 19 N 1.44347 * 113.48079 * 321.32544 * 18 17 15 20 20 C 1.36936 * 116.42791 * 187.47910 * 19 18 17 21 21 H 1.07998 * 120.00528 * 145.04392 * 20 19 18 22 22 C 1.38815 * 119.99445 * 325.05073 * 20 19 18 23 23 N 1.31611 * 120.00437 * 3.90040 * 22 20 19 24 24 Si 1.86802 * 119.99590 * 183.89367 * 22 20 19 25 25 H 1.48503 * 109.46947 * 60.00398 * 24 22 20 26 26 H 1.48504 * 109.47103 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47711 * 300.00074 * 24 22 20 28 28 C 1.43976 * 127.14870 * 7.49859 * 19 18 17 29 29 C 1.49788 * 116.30027 * 2.85447 * 28 19 18 30 30 H 1.08996 * 109.25039 * 141.41153 * 29 28 19 31 31 C 1.47932 * 125.74164 * 5.52815 * 13 11 10 32 32 H 1.09004 * 109.47185 * 185.28894 * 1 2 3 33 33 H 1.09001 * 109.47399 * 305.29268 * 1 2 3 34 34 H 1.09000 * 109.47143 * 65.29592 * 1 2 3 35 35 H 1.08994 * 109.47448 * 239.99274 * 2 1 3 36 36 H 1.09003 * 109.46952 * 119.99477 * 2 1 3 37 37 H 1.08997 * 109.47129 * 59.99757 * 5 3 2 38 38 H 1.09001 * 109.47635 * 179.97438 * 5 3 2 39 39 H 1.09000 * 109.47129 * 300.00061 * 5 3 2 40 40 H 1.07997 * 126.06609 * 179.97438 * 8 7 6 41 41 H 1.07999 * 127.32503 * 180.02562 * 9 8 7 42 42 H 1.09002 * 110.00697 * 298.38254 * 14 13 11 43 43 H 1.08999 * 110.00971 * 59.74348 * 14 13 11 44 44 H 1.08999 * 109.03640 * 290.43490 * 17 15 14 45 45 H 1.08992 * 109.04265 * 49.30477 * 17 15 14 46 46 H 1.08993 * 108.95989 * 199.97447 * 18 17 15 47 47 H 1.09009 * 108.01685 * 82.00416 * 18 17 15 48 48 H 0.96998 * 120.00490 * 180.02562 * 23 22 20 49 49 H 1.09000 * 108.11510 * 241.07472 * 28 19 18 50 50 H 1.09000 * 108.11543 * 124.62622 * 28 19 18 51 51 H 1.09006 * 110.56538 * 274.14557 * 31 13 11 52 52 H 1.08997 * 110.56803 * 36.99368 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5996 1.9835 0.8375 5 6 1.6441 2.1233 -1.3117 6 7 3.4991 1.4446 0.1303 7 7 4.3119 0.8150 -0.6396 8 6 5.5523 1.0150 -0.2735 9 6 5.5396 1.8553 0.8421 10 6 4.2032 2.1210 1.0856 11 6 3.6515 2.9631 2.1590 12 8 2.4485 3.0206 2.3293 13 7 4.4791 3.6706 2.9532 14 6 4.0770 4.4543 4.1348 15 6 5.3761 5.0659 4.7297 16 1 5.2146 6.0473 5.1753 17 6 5.9159 4.0487 5.7358 18 6 7.3201 4.4068 6.1904 19 7 8.1510 4.9305 5.1327 20 6 9.4724 5.1247 5.4352 21 1 10.2288 4.9586 4.6825 22 6 9.8395 5.5349 6.7095 23 7 8.9261 5.6631 7.6483 24 14 11.6302 5.9049 7.0918 25 1 12.1084 7.0003 6.2106 26 1 11.7574 6.3212 8.5116 27 1 12.4482 4.6879 6.8571 28 6 7.7433 5.2715 3.7946 29 6 6.2851 5.1212 3.4866 30 1 5.9666 5.9435 2.8460 31 6 5.9447 3.7862 2.7893 32 1 -0.3634 -1.0233 0.0947 33 1 -0.3634 0.5937 0.8388 34 1 -0.3633 0.4295 -0.9336 35 1 1.8933 -0.5139 -0.8898 36 1 1.8932 -0.5138 0.8901 37 1 0.5585 2.1218 -1.4087 38 1 2.0071 3.1512 -1.3116 39 1 2.0844 1.5823 -2.1493 40 1 6.4300 0.6027 -0.7490 41 1 6.3914 2.2209 1.3962 42 1 3.3919 5.2491 3.8397 43 1 3.6007 3.8045 4.8690 44 1 5.2482 4.0112 6.5965 45 1 5.9446 3.0653 5.2666 46 1 7.7963 3.5175 6.6030 47 1 7.2387 5.1573 6.9768 48 1 9.1826 5.9502 8.5387 49 1 8.3028 4.6452 3.0998 50 1 8.0238 6.3083 3.6087 51 1 6.4516 2.9550 3.2796 52 1 6.2098 3.8280 1.7329 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087983025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:22 Heat of formation + Delta-G solvation = 77.071098 kcal Electronic energy + Delta-G solvation = -31723.425507 eV Core-core repulsion = 27725.639443 eV Total energy + Delta-G solvation = -3997.786064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.68678 -40.24354 -38.30468 -36.73229 -35.64764 -32.91267 -31.80942 -31.67590 -30.89339 -30.09930 -29.22257 -27.82750 -25.87500 -25.09585 -24.14373 -22.70200 -22.46617 -21.85313 -21.38187 -20.52526 -19.21696 -17.81660 -17.30779 -17.20017 -16.37605 -16.15363 -15.64790 -15.49998 -15.22248 -14.96126 -14.50051 -14.37460 -13.94601 -13.81442 -13.66849 -13.57551 -13.20389 -13.07914 -12.96347 -12.71889 -12.59452 -12.36362 -12.25577 -12.08437 -11.96623 -11.80658 -11.36519 -11.29618 -11.15675 -10.92620 -10.86425 -10.84959 -10.49314 -10.26552 -10.14693 -10.01708 -9.74246 -9.65784 -9.50889 -9.29797 -9.08325 -8.63492 -8.49821 -6.59967 -5.56458 -3.37158 1.19247 2.19144 2.55412 3.00311 3.13866 3.36365 3.41824 3.42719 4.21073 4.25616 4.44864 4.51598 4.69190 4.70483 4.85804 4.87459 5.01395 5.04786 5.08456 5.09334 5.21115 5.32624 5.36955 5.41397 5.42689 5.52787 5.56055 5.60461 5.61442 5.64473 5.67010 5.71920 5.81523 5.88738 5.90519 5.94741 6.03266 6.10682 6.15854 6.37100 6.43333 6.56021 6.58727 6.67780 6.69476 6.80070 6.85192 7.39452 7.45362 7.79004 7.92294 8.05708 8.09775 8.60364 9.34124 9.99095 10.29240 11.22103 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.002460 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.212715 B =11378.190323 C =12036.465845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.130 3.870 4 H 0.136 0.864 5 C -0.160 4.160 6 N -0.251 5.251 7 N -0.276 5.276 8 C -0.008 4.008 9 C -0.195 4.195 10 C -0.035 4.035 11 C 0.604 3.396 12 O -0.551 6.551 13 N -0.597 5.597 14 C 0.111 3.889 15 C -0.080 4.080 16 H 0.099 0.901 17 C -0.127 4.127 18 C 0.158 3.842 19 N -0.592 5.592 20 C -0.266 4.266 21 H 0.063 0.937 22 C 0.014 3.986 23 N -0.900 5.900 24 Si 0.904 3.096 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.179 3.821 29 C -0.098 4.098 30 H 0.075 0.925 31 C 0.096 3.904 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.186 0.814 41 H 0.171 0.829 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.043 0.957 46 H 0.019 0.981 47 H 0.095 0.905 48 H 0.253 0.747 49 H 0.012 0.988 50 H 0.024 0.976 51 H 0.082 0.918 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 -7.179 -14.252 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.030 3.970 4 H 0.153 0.847 5 C -0.217 4.217 6 N -0.040 5.040 7 N -0.108 5.108 8 C -0.183 4.183 9 C -0.223 4.223 10 C -0.163 4.163 11 C 0.392 3.608 12 O -0.431 6.431 13 N -0.329 5.329 14 C -0.010 4.010 15 C -0.099 4.099 16 H 0.118 0.882 17 C -0.165 4.165 18 C 0.033 3.967 19 N -0.318 5.318 20 C -0.396 4.396 21 H 0.081 0.919 22 C -0.184 4.184 23 N -0.545 5.545 24 Si 0.733 3.267 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.210 1.210 28 C 0.053 3.947 29 C -0.117 4.117 30 H 0.093 0.907 31 C -0.026 4.026 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.203 0.797 41 H 0.188 0.812 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.113 0.887 48 H 0.064 0.936 49 H 0.030 0.970 50 H 0.042 0.958 51 H 0.100 0.900 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.081 -7.706 -14.835 22.515 hybrid contribution 1.643 0.479 0.800 1.889 sum -13.439 -7.228 -14.035 20.732 Atomic orbital electron populations 1.21778 0.94158 1.02438 1.02409 1.21791 0.96794 0.94461 1.03469 1.22179 0.73139 0.99289 1.02397 0.84657 1.22159 1.02555 1.00921 0.96101 1.45951 1.07408 1.31908 1.18710 1.73108 1.01613 1.17575 1.18531 1.23600 0.94399 1.02080 0.98268 1.22837 0.95466 1.03283 1.00733 1.21293 0.92292 1.05026 0.97678 1.16491 0.85113 0.78857 0.80351 1.90696 1.14103 1.66300 1.72025 1.48306 1.08724 1.47709 1.28209 1.22514 0.97920 0.94608 0.86007 1.22078 0.91993 1.00054 0.95767 0.88237 1.21840 1.00113 0.97019 0.97522 1.20653 0.85387 0.98957 0.91667 1.42579 1.07168 1.74509 1.07555 1.19111 0.83529 1.39922 0.97058 0.91885 1.25410 0.97686 0.98332 0.97019 1.69802 1.31295 1.50663 1.02723 0.86364 0.84740 0.78549 0.77055 1.20790 1.21590 1.20952 1.19210 0.89577 0.97822 0.88141 1.21676 0.97660 0.95901 0.96507 0.90688 1.23017 0.79036 0.99297 1.01201 0.91959 0.92057 0.92115 0.90529 0.91434 0.90108 0.92076 0.91279 0.79747 0.81174 0.91506 0.91049 0.92316 0.93824 0.96245 0.88747 0.93618 0.97016 0.95844 0.90016 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.54 37.15 0.35 -0.73 16 2 C -0.13 -1.20 5.49 -26.74 -0.15 -1.35 16 3 C 0.13 1.45 3.02 -67.94 -0.21 1.25 16 4 H 0.14 1.73 5.33 -51.93 -0.28 1.45 16 5 C -0.16 -1.48 9.21 37.16 0.34 -1.13 16 6 N -0.25 -3.31 3.09 -50.69 -0.16 -3.47 16 7 N -0.28 -3.57 11.56 30.59 0.35 -3.22 16 8 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 9 C -0.19 -2.41 9.29 -38.98 -0.36 -2.77 16 10 C -0.03 -0.49 6.89 -82.06 -0.57 -1.06 16 11 C 0.60 9.22 7.82 -12.64 -0.10 9.12 16 12 O -0.55 -9.33 14.74 5.25 0.08 -9.25 16 13 N -0.60 -8.60 3.34 -170.80 -0.57 -9.17 16 14 C 0.11 1.57 6.25 -2.28 -0.01 1.56 16 15 C -0.08 -1.24 3.60 -88.80 -0.32 -1.56 16 16 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 17 C -0.13 -2.24 4.83 -27.34 -0.13 -2.37 16 18 C 0.16 3.60 4.94 -5.76 -0.03 3.57 16 19 N -0.59 -13.96 3.24 -179.51 -0.58 -14.54 16 20 C -0.27 -7.00 9.29 -15.06 -0.14 -7.14 16 21 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 22 C 0.01 0.38 5.38 -17.43 -0.09 0.28 16 23 N -0.90 -24.84 10.11 55.49 0.56 -24.28 16 24 Si 0.90 21.00 29.56 -169.99 -5.02 15.98 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.18 3.45 5.75 -6.97 -0.04 3.41 16 29 C -0.10 -1.51 2.85 -90.90 -0.26 -1.77 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 C 0.10 1.32 3.89 -2.52 -0.01 1.31 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.37 6.84 -51.93 -0.36 0.02 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.57 6.70 -51.93 -0.35 0.22 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.17 1.89 4.98 -52.49 -0.26 1.63 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.02 7.78 -51.93 -0.40 0.61 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.04 0.76 6.68 -51.93 -0.35 0.41 16 46 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 47 H 0.10 2.45 5.58 -51.92 -0.29 2.16 16 48 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 49 H 0.01 0.23 7.81 -51.93 -0.41 -0.18 16 50 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 51 H 0.08 1.19 6.90 -51.93 -0.36 0.83 16 52 H 0.09 1.03 5.91 -51.93 -0.31 0.73 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -29.96 393.44 -9.73 -39.69 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.39 Total: 2.02 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.93 Total: 0.31 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.39 Total: -54.67 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.96 -9.73 -39.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087983025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.760 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds