Wall clock time and date at job start Wed Apr 1 2020 04:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47419 * 2 1 4 4 H 1.09003 * 109.46908 * 54.58426 * 3 2 1 5 5 C 1.53002 * 109.47112 * 294.58821 * 3 2 1 6 6 N 1.46494 * 109.47800 * 174.58497 * 3 2 1 7 7 N 1.28452 * 125.18639 * 54.87723 * 6 3 2 8 8 C 1.30866 * 110.92606 * 179.73713 * 7 6 3 9 9 C 1.39670 * 107.86333 * 0.02562 * 8 7 6 10 10 C 1.36595 * 125.19666 * 234.57762 * 6 3 2 11 11 C 1.47165 * 126.88366 * 0.26277 * 10 6 3 12 12 O 1.21636 * 119.99879 * 6.27217 * 11 10 6 13 13 N 1.34768 * 120.00343 * 186.27672 * 11 10 6 14 14 C 1.47380 * 125.74141 * 185.83067 * 13 11 10 15 15 C 1.55418 * 106.74183 * 179.06423 * 14 13 11 16 16 H 1.08990 * 112.76536 * 146.41604 * 15 14 13 17 17 C 1.52919 * 106.56617 * 270.29197 * 15 14 13 18 18 C 1.51877 * 111.49742 * 169.08367 * 17 15 14 19 19 N 1.44347 * 113.48079 * 321.32544 * 18 17 15 20 20 C 1.36936 * 116.42791 * 187.47910 * 19 18 17 21 21 H 1.07998 * 120.00528 * 145.04392 * 20 19 18 22 22 C 1.38815 * 119.99445 * 325.05073 * 20 19 18 23 23 N 1.31611 * 120.00437 * 3.90040 * 22 20 19 24 24 Si 1.86802 * 119.99590 * 183.89367 * 22 20 19 25 25 H 1.48503 * 109.46947 * 60.00398 * 24 22 20 26 26 H 1.48504 * 109.47103 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47711 * 300.00074 * 24 22 20 28 28 C 1.43976 * 127.14870 * 7.49859 * 19 18 17 29 29 C 1.49788 * 116.30027 * 2.85447 * 28 19 18 30 30 H 1.08996 * 109.25039 * 141.41153 * 29 28 19 31 31 C 1.47932 * 125.74164 * 5.52815 * 13 11 10 32 32 H 1.09004 * 109.47185 * 185.28894 * 1 2 3 33 33 H 1.09001 * 109.47399 * 305.29268 * 1 2 3 34 34 H 1.09000 * 109.47143 * 65.29592 * 1 2 3 35 35 H 1.08994 * 109.47448 * 239.99274 * 2 1 3 36 36 H 1.09003 * 109.46952 * 119.99477 * 2 1 3 37 37 H 1.08997 * 109.47129 * 59.99757 * 5 3 2 38 38 H 1.09001 * 109.47635 * 179.97438 * 5 3 2 39 39 H 1.09000 * 109.47129 * 300.00061 * 5 3 2 40 40 H 1.07997 * 126.06609 * 179.97438 * 8 7 6 41 41 H 1.07999 * 127.32503 * 180.02562 * 9 8 7 42 42 H 1.09002 * 110.00697 * 298.38254 * 14 13 11 43 43 H 1.08999 * 110.00971 * 59.74348 * 14 13 11 44 44 H 1.08999 * 109.03640 * 290.43490 * 17 15 14 45 45 H 1.08992 * 109.04265 * 49.30477 * 17 15 14 46 46 H 1.08993 * 108.95989 * 199.97447 * 18 17 15 47 47 H 1.09009 * 108.01685 * 82.00416 * 18 17 15 48 48 H 0.96998 * 120.00490 * 180.02562 * 23 22 20 49 49 H 1.09000 * 108.11510 * 241.07472 * 28 19 18 50 50 H 1.09000 * 108.11543 * 124.62622 * 28 19 18 51 51 H 1.09006 * 110.56538 * 274.14557 * 31 13 11 52 52 H 1.08997 * 110.56803 * 36.99368 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5996 1.9835 0.8375 5 6 1.6441 2.1233 -1.3117 6 7 3.4991 1.4446 0.1303 7 7 4.3119 0.8150 -0.6396 8 6 5.5523 1.0150 -0.2735 9 6 5.5396 1.8553 0.8421 10 6 4.2032 2.1210 1.0856 11 6 3.6515 2.9631 2.1590 12 8 2.4485 3.0206 2.3293 13 7 4.4791 3.6706 2.9532 14 6 4.0770 4.4543 4.1348 15 6 5.3761 5.0659 4.7297 16 1 5.2146 6.0473 5.1753 17 6 5.9159 4.0487 5.7358 18 6 7.3201 4.4068 6.1904 19 7 8.1510 4.9305 5.1327 20 6 9.4724 5.1247 5.4352 21 1 10.2288 4.9586 4.6825 22 6 9.8395 5.5349 6.7095 23 7 8.9261 5.6631 7.6483 24 14 11.6302 5.9049 7.0918 25 1 12.1084 7.0003 6.2106 26 1 11.7574 6.3212 8.5116 27 1 12.4482 4.6879 6.8571 28 6 7.7433 5.2715 3.7946 29 6 6.2851 5.1212 3.4866 30 1 5.9666 5.9435 2.8460 31 6 5.9447 3.7862 2.7893 32 1 -0.3634 -1.0233 0.0947 33 1 -0.3634 0.5937 0.8388 34 1 -0.3633 0.4295 -0.9336 35 1 1.8933 -0.5139 -0.8898 36 1 1.8932 -0.5138 0.8901 37 1 0.5585 2.1218 -1.4087 38 1 2.0071 3.1512 -1.3116 39 1 2.0844 1.5823 -2.1493 40 1 6.4300 0.6027 -0.7490 41 1 6.3914 2.2209 1.3962 42 1 3.3919 5.2491 3.8397 43 1 3.6007 3.8045 4.8690 44 1 5.2482 4.0112 6.5965 45 1 5.9446 3.0653 5.2666 46 1 7.7963 3.5175 6.6030 47 1 7.2387 5.1573 6.9768 48 1 9.1826 5.9502 8.5387 49 1 8.3028 4.6452 3.0998 50 1 8.0238 6.3083 3.6087 51 1 6.4516 2.9550 3.2796 52 1 6.2098 3.8280 1.7329 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087983025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:21 Heat of formation + Delta-G solvation = 60.882861 kcal Electronic energy + Delta-G solvation = -31724.127482 eV Core-core repulsion = 27725.639443 eV Total energy + Delta-G solvation = -3998.488039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.63984 -41.48556 -39.61075 -37.63241 -37.15272 -34.40602 -33.27455 -32.56264 -32.23046 -31.57391 -29.98348 -29.18461 -27.32177 -26.02663 -25.55474 -24.08389 -23.50968 -23.18986 -22.55980 -21.56292 -20.18619 -19.34116 -18.87350 -18.37076 -17.55121 -17.26463 -16.92147 -16.70642 -16.42824 -16.10559 -15.80053 -15.64422 -15.25822 -15.17537 -14.90168 -14.69644 -14.60967 -14.21447 -14.14009 -13.74897 -13.65125 -13.50076 -13.33693 -13.24021 -12.95448 -12.79984 -12.73365 -12.70090 -12.51245 -12.23445 -12.13031 -12.04727 -11.92530 -11.83712 -11.46049 -11.35033 -11.32950 -11.19600 -11.00822 -10.49260 -10.30193 -10.02035 -9.77839 -8.54843 -7.55958 -5.40991 0.15560 1.23160 1.50305 1.51584 1.57986 1.62967 1.94803 2.04779 2.52790 3.15164 3.29476 3.39581 3.48313 3.65549 3.75045 3.80432 3.87202 3.90154 4.09467 4.11893 4.16008 4.30276 4.33448 4.36693 4.44977 4.51629 4.51804 4.58952 4.63817 4.68279 4.72065 4.77942 4.81848 4.88537 4.91821 4.94223 4.99819 5.01389 5.08150 5.13588 5.17977 5.22844 5.30510 5.32223 5.37283 5.53999 5.55149 5.74741 5.76982 6.15568 6.25201 6.58722 6.81974 7.07172 7.33052 8.14341 8.32454 9.18102 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.002460 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.212715 B =11378.190323 C =12036.465845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.123 3.877 4 H 0.119 0.881 5 C -0.152 4.152 6 N -0.256 5.256 7 N -0.286 5.286 8 C -0.008 4.008 9 C -0.191 4.191 10 C -0.059 4.059 11 C 0.602 3.398 12 O -0.573 6.573 13 N -0.597 5.597 14 C 0.119 3.881 15 C -0.075 4.075 16 H 0.099 0.901 17 C -0.114 4.114 18 C 0.168 3.832 19 N -0.605 5.605 20 C -0.280 4.280 21 H 0.064 0.936 22 C -0.038 4.038 23 N -0.924 5.924 24 Si 0.964 3.036 25 H -0.275 1.275 26 H -0.295 1.295 27 H -0.279 1.279 28 C 0.177 3.823 29 C -0.094 4.094 30 H 0.096 0.904 31 C 0.106 3.894 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.216 0.784 41 H 0.182 0.818 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.047 0.953 46 H -0.017 1.017 47 H 0.063 0.937 48 H 0.247 0.753 49 H 0.023 0.977 50 H 0.014 0.986 51 H 0.075 0.925 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.975 -7.553 -16.331 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.023 3.977 4 H 0.136 0.864 5 C -0.210 4.210 6 N -0.045 5.045 7 N -0.119 5.119 8 C -0.183 4.183 9 C -0.219 4.219 10 C -0.187 4.187 11 C 0.392 3.608 12 O -0.455 6.455 13 N -0.328 5.328 14 C -0.002 4.002 15 C -0.095 4.095 16 H 0.118 0.882 17 C -0.153 4.153 18 C 0.043 3.957 19 N -0.330 5.330 20 C -0.410 4.410 21 H 0.082 0.918 22 C -0.234 4.234 23 N -0.570 5.570 24 Si 0.792 3.208 25 H -0.201 1.201 26 H -0.221 1.221 27 H -0.205 1.205 28 C 0.052 3.948 29 C -0.113 4.113 30 H 0.114 0.886 31 C -0.016 4.016 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.233 0.767 41 H 0.200 0.800 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.001 0.999 47 H 0.081 0.919 48 H 0.057 0.943 49 H 0.041 0.959 50 H 0.032 0.968 51 H 0.093 0.907 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.541 -8.080 -16.943 24.370 hybrid contribution 1.818 0.555 1.423 2.374 sum -13.723 -7.525 -15.520 22.041 Atomic orbital electron populations 1.21772 0.92360 1.03214 1.03031 1.21743 0.98278 0.93188 1.02604 1.22310 0.72449 1.00223 1.02670 0.86357 1.22124 1.04014 0.99887 0.94936 1.46179 1.08043 1.31730 1.18523 1.73109 1.02232 1.17757 1.18775 1.24159 0.94873 1.01398 0.97857 1.23034 0.95089 1.02993 1.00833 1.21324 0.93182 1.05994 0.98169 1.16665 0.84863 0.78792 0.80521 1.90687 1.15002 1.67057 1.72704 1.48291 1.08846 1.47608 1.28076 1.22400 0.97002 0.94858 0.85973 1.21991 0.92802 0.99421 0.95237 0.88245 1.21659 0.97071 0.97827 0.98701 1.20298 0.87831 0.96286 0.91252 1.42809 1.06561 1.74608 1.09065 1.19448 0.85069 1.39344 0.97148 0.91803 1.26106 1.01330 0.98821 0.97146 1.70054 1.32718 1.51598 1.02647 0.85410 0.80545 0.78416 0.76434 1.20085 1.22077 1.20474 1.19291 0.92340 0.97238 0.85950 1.21576 0.95057 0.97789 0.96923 0.88588 1.22942 0.78577 0.97864 1.02185 0.90917 0.92540 0.90576 0.90420 0.93139 0.87819 0.93168 0.91215 0.76718 0.80048 0.90318 0.91016 0.91218 0.93382 0.99907 0.91920 0.94278 0.95933 0.96818 0.90736 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.54 71.98 0.69 -1.19 16 2 C -0.12 -2.16 5.49 30.59 0.17 -1.99 16 3 C 0.12 2.65 3.02 44.99 0.14 2.78 16 4 H 0.12 2.99 5.33 -2.39 -0.01 2.98 16 5 C -0.15 -2.59 9.21 71.98 0.66 -1.92 16 6 N -0.26 -6.47 3.09 -314.30 -0.97 -7.44 16 7 N -0.29 -6.93 11.56 -57.14 -0.66 -7.59 16 8 C -0.01 -0.16 12.03 85.18 1.02 0.86 16 9 C -0.19 -4.31 9.29 22.66 0.21 -4.10 16 10 C -0.06 -1.57 6.89 40.79 0.28 -1.29 16 11 C 0.60 17.64 7.82 86.59 0.68 18.32 16 12 O -0.57 -19.00 14.74 -4.14 -0.06 -19.06 16 13 N -0.60 -16.06 3.34 -812.55 -2.71 -18.77 16 14 C 0.12 3.15 6.25 87.04 0.54 3.70 16 15 C -0.08 -2.24 3.60 -9.62 -0.03 -2.28 16 16 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 17 C -0.11 -4.01 4.83 30.20 0.15 -3.87 16 18 C 0.17 7.88 4.94 86.41 0.43 8.31 16 19 N -0.60 -28.71 3.24 -721.85 -2.34 -31.05 16 20 C -0.28 -14.84 9.29 84.03 0.78 -14.06 16 21 H 0.06 3.31 7.83 -2.91 -0.02 3.28 16 22 C -0.04 -2.07 5.38 84.86 0.46 -1.62 16 23 N -0.92 -52.47 10.11 21.65 0.22 -52.25 16 24 Si 0.96 43.61 29.56 68.60 2.03 45.64 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 28 C 0.18 6.65 5.75 85.82 0.49 7.14 16 29 C -0.09 -2.72 2.85 -10.97 -0.03 -2.75 16 30 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 31 C 0.11 2.67 3.89 86.58 0.34 3.00 16 32 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.74 6.84 -2.39 -0.02 0.73 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.24 6.70 -2.39 -0.02 1.22 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.22 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.18 3.56 4.98 -2.91 -0.01 3.55 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 1.92 7.78 -2.39 -0.02 1.90 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.05 1.64 6.68 -2.39 -0.02 1.62 16 46 H -0.02 -0.92 8.12 -2.39 -0.02 -0.94 16 47 H 0.06 3.39 5.58 -2.38 -0.01 3.38 16 48 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 49 H 0.02 0.81 7.81 -2.39 -0.02 0.79 16 50 H 0.01 0.55 8.13 -2.39 -0.02 0.53 16 51 H 0.07 2.03 6.90 -2.38 -0.02 2.01 16 52 H 0.11 2.26 5.91 -2.39 -0.01 2.25 16 Total: -1.00 -65.81 393.44 3.38 -62.43 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.91 Total: 19.04 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 6.97 Total: 9.05 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -6.46 Total: -117.10 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.06 Total: -19.06 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -65.81 3.38 -62.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087983025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.310 kcal (2) G-P(sol) polarization free energy of solvation -65.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds