Wall clock time and date at job start Wed Apr 1 2020 04:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 H 1.09004 * 109.47045 * 54.99734 * 3 2 1 5 5 C 1.53002 * 109.47052 * 295.00247 * 3 2 1 6 6 N 1.46496 * 109.47277 * 175.00197 * 3 2 1 7 7 N 1.28435 * 125.19226 * 65.86911 * 6 3 2 8 8 C 1.30863 * 110.93075 * 179.97438 * 7 6 3 9 9 C 1.39677 * 107.85912 * 359.77209 * 8 7 6 10 10 C 1.36597 * 125.18867 * 245.85043 * 6 3 2 11 11 C 1.47164 * 126.88531 * 359.97438 * 10 6 3 12 12 O 1.21624 * 119.99921 * 353.43745 * 11 10 6 13 13 N 1.34777 * 119.99925 * 173.44004 * 11 10 6 14 14 C 1.47192 * 126.70504 * 354.16925 * 13 11 10 15 15 C 1.53741 * 106.43312 * 211.40592 * 14 13 11 16 16 H 1.08997 * 112.28435 * 104.35999 * 15 14 13 17 17 C 1.54452 * 109.01800 * 229.46076 * 15 14 13 18 18 N 1.48326 * 104.32560 * 137.92335 * 17 15 14 19 19 C 1.36943 * 128.19560 * 138.17409 * 18 17 15 20 20 H 1.07997 * 119.99784 * 200.50001 * 19 18 17 21 21 C 1.38810 * 119.99840 * 20.49991 * 19 18 17 22 22 N 1.31615 * 120.00092 * 21.10906 * 21 19 18 23 23 Si 1.86799 * 119.99778 * 201.10444 * 21 19 18 24 24 H 1.48503 * 109.47105 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47040 * 59.99966 * 23 21 19 26 26 H 1.48499 * 109.47306 * 300.00312 * 23 21 19 27 27 C 1.48328 * 103.60684 * 318.43311 * 18 17 15 28 28 C 1.54067 * 104.51479 * 41.53361 * 27 18 17 29 29 C 1.52999 * 112.58066 * 97.43899 * 28 27 18 30 30 C 1.47197 * 126.70128 * 174.21606 * 13 11 10 31 31 H 1.09001 * 109.47031 * 299.99758 * 1 2 3 32 32 H 1.09003 * 109.46829 * 59.99662 * 1 2 3 33 33 H 1.09003 * 109.47258 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47031 * 240.00242 * 2 1 3 35 35 H 1.08994 * 109.46920 * 120.00128 * 2 1 3 36 36 H 1.08999 * 109.47164 * 60.00099 * 5 3 2 37 37 H 1.09003 * 109.46939 * 180.02562 * 5 3 2 38 38 H 1.08996 * 109.47385 * 299.99802 * 5 3 2 39 39 H 1.08001 * 126.06905 * 180.02562 * 8 7 6 40 40 H 1.07992 * 127.31935 * 180.26835 * 9 8 7 41 41 H 1.09008 * 110.06352 * 92.16401 * 14 13 11 42 42 H 1.08997 * 110.06870 * 330.65494 * 14 13 11 43 43 H 1.09000 * 110.45881 * 19.21120 * 17 15 14 44 44 H 1.08999 * 110.45821 * 256.63779 * 17 15 14 45 45 H 0.97002 * 120.00233 * 5.64853 * 22 21 19 46 46 H 1.08997 * 110.46385 * 160.27978 * 27 18 17 47 47 H 1.08999 * 110.46339 * 282.86071 * 27 18 17 48 48 H 1.09007 * 109.46750 * 302.11158 * 29 28 27 49 49 H 1.08998 * 109.46849 * 62.10671 * 29 28 27 50 50 H 1.08999 * 109.47164 * 182.11276 * 29 28 27 51 51 H 1.08999 * 110.06295 * 267.83216 * 30 13 11 52 52 H 1.08997 * 110.06736 * 29.35099 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 7 3.5001 1.4442 0.1203 7 7 4.3160 0.9884 -0.7607 8 6 5.5560 1.1307 -0.3675 9 6 5.5397 1.7425 0.8881 10 6 4.2015 1.9313 1.1865 11 6 3.6458 2.5409 2.4052 12 8 2.4522 2.7600 2.4857 13 7 4.4596 2.8565 3.4321 14 6 5.8951 2.5506 3.5431 15 6 6.1835 2.3543 5.0404 16 1 6.3051 1.3036 5.3036 17 6 7.4134 3.2026 5.4316 18 7 7.0466 3.7998 6.7389 19 6 7.8301 3.9467 7.8524 20 1 7.3719 4.0855 8.8205 21 6 9.2130 3.9171 7.7368 22 7 9.7819 4.1648 6.5761 23 14 10.2668 3.5256 9.2287 24 1 11.7007 3.5574 8.8441 25 1 9.9203 2.1747 9.7387 26 1 10.0169 4.5342 10.2897 27 6 5.6285 4.1944 6.5566 28 6 4.9961 3.0183 5.7883 29 6 4.2660 2.0392 6.7099 30 6 4.0863 3.5736 4.6622 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.5490 2.1253 -1.3969 37 1 1.9990 3.1541 -1.3075 38 1 2.0698 1.5876 -2.1492 39 1 6.4359 0.8322 -0.9180 40 1 6.3904 2.0098 1.4972 41 1 6.4855 3.3804 3.1543 42 1 6.1265 1.6375 2.9948 43 1 7.5886 3.9836 4.6916 44 1 8.2951 2.5702 5.5355 45 1 9.2417 4.4481 5.8218 46 1 5.1413 4.3226 7.5232 47 1 5.5602 5.1106 5.9700 48 1 4.9615 1.6556 7.4564 49 1 3.4447 2.5536 7.2088 50 1 3.8718 1.2110 6.1210 51 1 4.2519 4.6436 4.5362 52 1 3.0408 3.3825 4.9039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091709609.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:43 Heat of formation + Delta-G solvation = 77.123885 kcal Electronic energy + Delta-G solvation = -31830.880261 eV Core-core repulsion = 27833.096486 eV Total energy + Delta-G solvation = -3997.783775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.71151 -40.30288 -38.41024 -36.75758 -35.30902 -33.15274 -31.77358 -31.30742 -30.70196 -29.87735 -29.21696 -26.81660 -25.86102 -25.31576 -25.09547 -23.38045 -22.41220 -21.83545 -20.89578 -20.35429 -19.29652 -18.66132 -17.49953 -17.03649 -16.59306 -16.19856 -15.54374 -15.44657 -15.34470 -14.85243 -14.43541 -14.26575 -14.07237 -13.78655 -13.74901 -13.48974 -13.40586 -12.99188 -12.87707 -12.80001 -12.58037 -12.35614 -12.13510 -12.04392 -11.96367 -11.77411 -11.37925 -11.35004 -11.16009 -10.99828 -10.78995 -10.73826 -10.56425 -10.30422 -10.19503 -10.14845 -10.01921 -9.88414 -9.43726 -9.31700 -9.10097 -8.70219 -8.56934 -7.05390 -6.16130 -3.24828 1.16981 2.17205 2.53146 3.00339 3.11604 3.46123 3.48891 3.66994 4.21000 4.25305 4.48230 4.50260 4.67754 4.69980 4.77819 4.84299 4.99657 5.03638 5.07436 5.08466 5.19870 5.27401 5.35455 5.36762 5.41047 5.43796 5.50212 5.56204 5.58636 5.59576 5.65267 5.66723 5.78396 5.85459 5.87399 5.90882 5.93225 5.97656 6.10053 6.15101 6.25290 6.39876 6.40859 6.49504 6.56805 6.65717 6.71257 6.84718 6.92065 7.43509 7.65435 7.90695 8.04043 8.37748 8.91216 9.72279 10.34376 11.19754 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.002586 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.270425 B =10824.199963 C =11587.481385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.130 3.870 4 H 0.136 0.864 5 C -0.158 4.158 6 N -0.251 5.251 7 N -0.275 5.275 8 C -0.008 4.008 9 C -0.196 4.196 10 C -0.034 4.034 11 C 0.607 3.393 12 O -0.551 6.551 13 N -0.595 5.595 14 C 0.093 3.907 15 C -0.112 4.112 16 H 0.087 0.913 17 C 0.142 3.858 18 N -0.597 5.597 19 C -0.325 4.325 20 H 0.065 0.935 21 C -0.027 4.027 22 N -0.923 5.923 23 Si 1.070 2.930 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.137 3.863 28 C -0.084 4.084 29 C -0.120 4.120 30 C 0.118 3.882 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.186 0.814 40 H 0.172 0.828 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.029 0.971 44 H 0.070 0.930 45 H 0.268 0.732 46 H 0.052 0.948 47 H 0.026 0.974 48 H 0.065 0.935 49 H 0.052 0.948 50 H 0.047 0.953 51 H 0.074 0.926 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.419 -6.850 -13.296 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C 0.030 3.970 4 H 0.153 0.847 5 C -0.216 4.216 6 N -0.039 5.039 7 N -0.108 5.108 8 C -0.183 4.183 9 C -0.224 4.224 10 C -0.162 4.162 11 C 0.395 3.605 12 O -0.430 6.430 13 N -0.326 5.326 14 C -0.030 4.030 15 C -0.133 4.133 16 H 0.105 0.895 17 C 0.015 3.985 18 N -0.321 5.321 19 C -0.453 4.453 20 H 0.083 0.917 21 C -0.228 4.228 22 N -0.564 5.564 23 Si 0.900 3.100 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.011 3.989 28 C -0.086 4.086 29 C -0.177 4.177 30 C -0.004 4.004 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.203 0.797 40 H 0.189 0.811 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.044 0.956 48 H 0.084 0.916 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.092 0.908 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.249 -7.356 -13.545 20.991 hybrid contribution -0.905 0.612 0.072 1.095 sum -15.154 -6.744 -13.473 21.370 Atomic orbital electron populations 1.21783 0.94065 1.02424 1.02503 1.21840 0.96969 0.94622 1.03293 1.22171 0.73046 0.99127 1.02672 0.84657 1.22122 1.02410 1.00938 0.96103 1.45950 1.07368 1.40174 1.10432 1.73101 1.01506 1.18433 1.17753 1.23605 0.94433 1.04085 0.96201 1.22823 0.95414 1.05396 0.98789 1.21291 0.92314 1.09314 0.93318 1.16465 0.84915 0.78059 0.81060 1.90694 1.14480 1.56503 1.81366 1.48174 1.10685 1.55824 1.17934 1.22797 0.80368 1.01621 0.98184 1.23160 0.97558 1.00883 0.91695 0.89473 1.21850 0.94439 0.93956 0.88214 1.45114 1.07982 1.67853 1.11133 1.19758 0.89675 1.50801 0.85031 0.91682 1.25845 0.94337 0.99235 1.03406 1.70784 1.38421 1.44227 1.03017 0.83435 0.76280 0.76206 0.74099 1.20989 1.22040 1.21992 1.21760 0.87397 0.92542 0.97236 1.22534 0.94156 0.97467 0.94479 1.21568 0.99576 0.97777 0.98769 1.22489 0.99907 0.95719 0.82271 0.92040 0.92030 0.91960 0.90711 0.91485 0.90145 0.92033 0.91073 0.79724 0.81130 0.90349 0.89523 0.95370 0.91202 0.92045 0.92901 0.95592 0.91554 0.92849 0.93396 0.90799 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.13 -1.23 5.67 -26.73 -0.15 -1.38 16 3 C 0.13 1.45 3.02 -67.93 -0.21 1.24 16 4 H 0.14 1.72 5.34 -51.93 -0.28 1.45 16 5 C -0.16 -1.45 9.05 37.16 0.34 -1.12 16 6 N -0.25 -3.29 3.09 -50.69 -0.16 -3.45 16 7 N -0.28 -3.54 11.51 30.59 0.35 -3.19 16 8 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 9 C -0.20 -2.38 9.28 -38.98 -0.36 -2.75 16 10 C -0.03 -0.48 6.89 -82.06 -0.57 -1.04 16 11 C 0.61 9.28 7.84 -12.64 -0.10 9.18 16 12 O -0.55 -9.32 14.60 5.26 0.08 -9.24 16 13 N -0.60 -8.69 3.32 -172.20 -0.57 -9.27 16 14 C 0.09 1.28 4.93 -3.28 -0.02 1.27 16 15 C -0.11 -1.84 3.71 -88.28 -0.33 -2.17 16 16 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 17 C 0.14 2.97 4.62 -2.27 -0.01 2.96 16 18 N -0.60 -14.14 3.25 -168.72 -0.55 -14.69 16 19 C -0.32 -8.74 10.25 -15.06 -0.15 -8.90 16 20 H 0.07 1.75 7.91 -52.49 -0.42 1.33 16 21 C -0.03 -0.74 5.19 -17.43 -0.09 -0.84 16 22 N -0.92 -26.81 12.72 55.49 0.71 -26.11 16 23 Si 1.07 24.55 29.97 -169.99 -5.09 19.46 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.14 2.65 6.39 -2.48 -0.02 2.64 16 28 C -0.08 -1.34 1.10 -151.68 -0.17 -1.51 16 29 C -0.12 -1.77 8.64 37.16 0.32 -1.45 16 30 C 0.12 1.75 6.29 -2.58 -0.02 1.74 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.56 6.56 -51.93 -0.34 0.22 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.17 1.83 5.14 -52.49 -0.27 1.56 16 41 H 0.08 1.08 7.03 -51.92 -0.37 0.71 16 42 H 0.09 1.06 5.35 -51.93 -0.28 0.78 16 43 H 0.03 0.60 6.80 -51.93 -0.35 0.25 16 44 H 0.07 1.64 7.20 -51.93 -0.37 1.27 16 45 H 0.27 7.72 6.15 -40.82 -0.25 7.46 16 46 H 0.05 1.01 7.92 -51.93 -0.41 0.60 16 47 H 0.03 0.51 7.18 -51.93 -0.37 0.13 16 48 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.07 1.09 7.15 -51.93 -0.37 0.72 16 52 H 0.08 1.15 7.59 -51.93 -0.39 0.76 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -31.54 397.47 -8.87 -40.41 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.25 Total: 3.24 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.37 Total: -3.15 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.22 Total: -56.70 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.54 -8.87 -40.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091709609.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.530 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds