Wall clock time and date at job start Wed Apr 1 2020 04:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 H 1.09004 * 109.47045 * 54.99734 * 3 2 1 5 5 C 1.53002 * 109.47052 * 295.00247 * 3 2 1 6 6 N 1.46496 * 109.47277 * 175.00197 * 3 2 1 7 7 N 1.28435 * 125.19226 * 65.86911 * 6 3 2 8 8 C 1.30863 * 110.93075 * 179.97438 * 7 6 3 9 9 C 1.39677 * 107.85912 * 359.77209 * 8 7 6 10 10 C 1.36597 * 125.18867 * 245.85043 * 6 3 2 11 11 C 1.47164 * 126.88531 * 359.97438 * 10 6 3 12 12 O 1.21624 * 119.99921 * 353.43745 * 11 10 6 13 13 N 1.34777 * 119.99925 * 173.44004 * 11 10 6 14 14 C 1.47192 * 126.70504 * 354.16925 * 13 11 10 15 15 C 1.53741 * 106.43312 * 211.40592 * 14 13 11 16 16 H 1.08997 * 112.28435 * 104.35999 * 15 14 13 17 17 C 1.54452 * 109.01800 * 229.46076 * 15 14 13 18 18 N 1.48326 * 104.32560 * 137.92335 * 17 15 14 19 19 C 1.36943 * 128.19560 * 138.17409 * 18 17 15 20 20 H 1.07997 * 119.99784 * 200.50001 * 19 18 17 21 21 C 1.38810 * 119.99840 * 20.49991 * 19 18 17 22 22 N 1.31615 * 120.00092 * 21.10906 * 21 19 18 23 23 Si 1.86799 * 119.99778 * 201.10444 * 21 19 18 24 24 H 1.48503 * 109.47105 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47040 * 59.99966 * 23 21 19 26 26 H 1.48499 * 109.47306 * 300.00312 * 23 21 19 27 27 C 1.48328 * 103.60684 * 318.43311 * 18 17 15 28 28 C 1.54067 * 104.51479 * 41.53361 * 27 18 17 29 29 C 1.52999 * 112.58066 * 97.43899 * 28 27 18 30 30 C 1.47197 * 126.70128 * 174.21606 * 13 11 10 31 31 H 1.09001 * 109.47031 * 299.99758 * 1 2 3 32 32 H 1.09003 * 109.46829 * 59.99662 * 1 2 3 33 33 H 1.09003 * 109.47258 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47031 * 240.00242 * 2 1 3 35 35 H 1.08994 * 109.46920 * 120.00128 * 2 1 3 36 36 H 1.08999 * 109.47164 * 60.00099 * 5 3 2 37 37 H 1.09003 * 109.46939 * 180.02562 * 5 3 2 38 38 H 1.08996 * 109.47385 * 299.99802 * 5 3 2 39 39 H 1.08001 * 126.06905 * 180.02562 * 8 7 6 40 40 H 1.07992 * 127.31935 * 180.26835 * 9 8 7 41 41 H 1.09008 * 110.06352 * 92.16401 * 14 13 11 42 42 H 1.08997 * 110.06870 * 330.65494 * 14 13 11 43 43 H 1.09000 * 110.45881 * 19.21120 * 17 15 14 44 44 H 1.08999 * 110.45821 * 256.63779 * 17 15 14 45 45 H 0.97002 * 120.00233 * 5.64853 * 22 21 19 46 46 H 1.08997 * 110.46385 * 160.27978 * 27 18 17 47 47 H 1.08999 * 110.46339 * 282.86071 * 27 18 17 48 48 H 1.09007 * 109.46750 * 302.11158 * 29 28 27 49 49 H 1.08998 * 109.46849 * 62.10671 * 29 28 27 50 50 H 1.08999 * 109.47164 * 182.11276 * 29 28 27 51 51 H 1.08999 * 110.06295 * 267.83216 * 30 13 11 52 52 H 1.08997 * 110.06736 * 29.35099 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 7 3.5001 1.4442 0.1203 7 7 4.3160 0.9884 -0.7607 8 6 5.5560 1.1307 -0.3675 9 6 5.5397 1.7425 0.8881 10 6 4.2015 1.9313 1.1865 11 6 3.6458 2.5409 2.4052 12 8 2.4522 2.7600 2.4857 13 7 4.4596 2.8565 3.4321 14 6 5.8951 2.5506 3.5431 15 6 6.1835 2.3543 5.0404 16 1 6.3051 1.3036 5.3036 17 6 7.4134 3.2026 5.4316 18 7 7.0466 3.7998 6.7389 19 6 7.8301 3.9467 7.8524 20 1 7.3719 4.0855 8.8205 21 6 9.2130 3.9171 7.7368 22 7 9.7819 4.1648 6.5761 23 14 10.2668 3.5256 9.2287 24 1 11.7007 3.5574 8.8441 25 1 9.9203 2.1747 9.7387 26 1 10.0169 4.5342 10.2897 27 6 5.6285 4.1944 6.5566 28 6 4.9961 3.0183 5.7883 29 6 4.2660 2.0392 6.7099 30 6 4.0863 3.5736 4.6622 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.5490 2.1253 -1.3969 37 1 1.9990 3.1541 -1.3075 38 1 2.0698 1.5876 -2.1492 39 1 6.4359 0.8322 -0.9180 40 1 6.3904 2.0098 1.4972 41 1 6.4855 3.3804 3.1543 42 1 6.1265 1.6375 2.9948 43 1 7.5886 3.9836 4.6916 44 1 8.2951 2.5702 5.5355 45 1 9.2417 4.4481 5.8218 46 1 5.1413 4.3226 7.5232 47 1 5.5602 5.1106 5.9700 48 1 4.9615 1.6556 7.4564 49 1 3.4447 2.5536 7.2088 50 1 3.8718 1.2110 6.1210 51 1 4.2519 4.6436 4.5362 52 1 3.0408 3.3825 4.9039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091709609.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:42 Heat of formation + Delta-G solvation = 59.596469 kcal Electronic energy + Delta-G solvation = -31831.640307 eV Core-core repulsion = 27833.096486 eV Total energy + Delta-G solvation = -3998.543821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.66583 -41.60630 -39.72418 -37.60218 -36.80401 -34.74605 -32.81301 -32.54371 -31.90342 -31.43958 -29.97837 -28.06443 -27.49439 -26.82965 -25.89868 -24.76401 -23.27914 -23.06323 -22.27930 -21.61217 -20.43052 -19.86680 -19.35998 -18.22039 -17.71068 -17.26714 -16.61453 -16.54931 -16.31359 -16.13379 -15.90298 -15.74328 -15.39427 -15.23654 -14.83639 -14.71287 -14.55436 -14.19902 -14.15928 -13.72440 -13.67235 -13.36197 -13.23963 -13.12094 -12.88174 -12.81365 -12.73399 -12.52960 -12.40624 -12.36509 -12.16688 -11.92843 -11.89859 -11.82699 -11.61896 -11.59873 -11.54438 -11.34404 -11.03369 -10.58171 -10.32516 -10.03704 -9.86042 -9.01195 -8.29169 -5.33746 0.12558 1.19914 1.60538 1.60892 1.67786 1.86186 1.92275 2.01279 2.65478 3.08196 3.24124 3.33852 3.39800 3.49263 3.71561 3.78046 3.83827 3.88797 4.02960 4.07224 4.10721 4.12321 4.20020 4.31616 4.35865 4.38841 4.46571 4.50784 4.60230 4.63282 4.68366 4.72243 4.78913 4.80089 4.84923 4.86536 4.91986 4.93858 4.96362 4.99467 5.08046 5.15076 5.17049 5.22466 5.29115 5.29831 5.38048 5.51850 5.67972 5.75037 6.25205 6.33240 6.78302 6.87929 7.05176 7.69234 8.37283 9.07347 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.002586 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.270425 B =10824.199963 C =11587.481385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.123 3.877 4 H 0.119 0.881 5 C -0.151 4.151 6 N -0.255 5.255 7 N -0.285 5.285 8 C -0.007 4.007 9 C -0.191 4.191 10 C -0.059 4.059 11 C 0.607 3.393 12 O -0.571 6.571 13 N -0.594 5.594 14 C 0.102 3.898 15 C -0.101 4.101 16 H 0.091 0.909 17 C 0.149 3.851 18 N -0.623 5.623 19 C -0.329 4.329 20 H 0.060 0.940 21 C -0.079 4.079 22 N -0.953 5.953 23 Si 1.118 2.882 24 H -0.292 1.292 25 H -0.280 1.280 26 H -0.277 1.277 27 C 0.136 3.864 28 C -0.074 4.074 29 C -0.113 4.113 30 C 0.124 3.876 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.103 0.897 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.217 0.783 40 H 0.184 0.816 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.022 0.978 44 H 0.037 0.963 45 H 0.257 0.743 46 H 0.052 0.948 47 H 0.027 0.973 48 H 0.048 0.952 49 H 0.068 0.932 50 H 0.060 0.940 51 H 0.075 0.925 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.548 -7.900 -14.179 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C 0.023 3.977 4 H 0.136 0.864 5 C -0.208 4.208 6 N -0.044 5.044 7 N -0.118 5.118 8 C -0.182 4.182 9 C -0.220 4.220 10 C -0.187 4.187 11 C 0.396 3.604 12 O -0.452 6.452 13 N -0.325 5.325 14 C -0.020 4.020 15 C -0.122 4.122 16 H 0.109 0.891 17 C 0.023 3.977 18 N -0.348 5.348 19 C -0.458 4.458 20 H 0.078 0.922 21 C -0.275 4.275 22 N -0.596 5.596 23 Si 0.942 3.058 24 H -0.219 1.219 25 H -0.206 1.206 26 H -0.203 1.203 27 C 0.010 3.990 28 C -0.076 4.076 29 C -0.171 4.171 30 C 0.002 3.998 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.234 0.766 40 H 0.201 0.799 41 H 0.100 0.900 42 H 0.126 0.874 43 H 0.040 0.960 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.045 0.955 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.079 0.921 51 H 0.093 0.907 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.424 -8.409 -14.435 22.738 hybrid contribution -0.602 0.976 0.317 1.190 sum -16.026 -7.432 -14.118 22.614 Atomic orbital electron populations 1.21779 0.92308 1.03328 1.02971 1.21788 0.98412 0.93330 1.02465 1.22302 0.72370 1.00082 1.02916 0.86356 1.22094 1.03899 0.99883 0.94959 1.46176 1.08004 1.40033 1.10195 1.73103 1.02136 1.18654 1.17900 1.24173 0.94914 1.03116 0.96017 1.23041 0.95037 1.04714 0.99197 1.21294 0.93235 1.10737 0.93433 1.16639 0.84632 0.77712 0.81397 1.90686 1.15326 1.57355 1.81817 1.48117 1.10771 1.55761 1.17826 1.22720 0.80095 1.02878 0.96353 1.22996 0.95443 1.00126 0.93645 0.89051 1.21747 0.95137 0.93688 0.87095 1.45359 1.09398 1.68771 1.11269 1.20000 0.90287 1.49471 0.86041 0.92203 1.27127 0.95941 0.99379 1.05039 1.70884 1.38427 1.46720 1.03560 0.82798 0.74248 0.76960 0.71750 1.21855 1.20602 1.20314 1.21891 0.85396 0.93900 0.97790 1.22401 0.94157 0.96360 0.94692 1.21514 0.99454 0.97856 0.98241 1.22380 0.99811 0.95717 0.81906 0.92577 0.90534 0.90862 0.90580 0.93135 0.87805 0.93165 0.91029 0.76639 0.79869 0.90020 0.87355 0.96020 0.94418 0.93235 0.92969 0.95541 0.93269 0.91264 0.92135 0.90720 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.67 71.98 0.70 -1.19 16 2 C -0.12 -2.18 5.67 30.60 0.17 -2.01 16 3 C 0.12 2.63 3.02 44.99 0.14 2.77 16 4 H 0.12 2.98 5.34 -2.39 -0.01 2.96 16 5 C -0.15 -2.56 9.05 71.98 0.65 -1.91 16 6 N -0.26 -6.42 3.09 -314.29 -0.97 -7.39 16 7 N -0.29 -6.86 11.51 -57.14 -0.66 -7.52 16 8 C -0.01 -0.15 12.03 85.18 1.02 0.88 16 9 C -0.19 -4.27 9.28 22.66 0.21 -4.06 16 10 C -0.06 -1.58 6.89 40.79 0.28 -1.29 16 11 C 0.61 17.88 7.84 86.59 0.68 18.55 16 12 O -0.57 -18.91 14.60 -4.11 -0.06 -18.97 16 13 N -0.59 -16.47 3.32 -816.97 -2.71 -19.18 16 14 C 0.10 2.66 4.93 86.50 0.43 3.09 16 15 C -0.10 -3.25 3.71 -9.28 -0.03 -3.28 16 16 H 0.09 2.89 7.93 -2.39 -0.02 2.87 16 17 C 0.15 6.36 4.62 86.52 0.40 6.76 16 18 N -0.62 -29.95 3.25 -687.72 -2.23 -32.19 16 19 C -0.33 -17.98 10.25 84.03 0.86 -17.12 16 20 H 0.06 3.25 7.91 -2.91 -0.02 3.22 16 21 C -0.08 -4.42 5.19 84.86 0.44 -3.98 16 22 N -0.95 -56.65 12.72 21.65 0.28 -56.38 16 23 Si 1.12 49.90 29.97 68.60 2.06 51.95 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 27 C 0.14 5.23 6.39 86.39 0.55 5.78 16 28 C -0.07 -2.28 1.10 -50.35 -0.06 -2.34 16 29 C -0.11 -3.17 8.64 71.98 0.62 -2.55 16 30 C 0.12 3.49 6.29 86.95 0.55 4.04 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.75 6.56 -2.39 -0.02 0.74 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.23 6.56 -2.39 -0.02 1.21 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 39 H 0.22 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.18 3.49 5.14 -2.91 -0.01 3.47 16 41 H 0.08 2.14 7.03 -2.38 -0.02 2.12 16 42 H 0.11 2.40 5.35 -2.39 -0.01 2.39 16 43 H 0.02 0.95 6.80 -2.39 -0.02 0.94 16 44 H 0.04 1.82 7.20 -2.39 -0.02 1.81 16 45 H 0.26 15.31 6.15 -92.71 -0.57 14.74 16 46 H 0.05 1.98 7.92 -2.39 -0.02 1.97 16 47 H 0.03 1.03 7.18 -2.39 -0.02 1.01 16 48 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 49 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.07 2.11 7.15 -2.39 -0.02 2.09 16 52 H 0.09 2.33 7.59 -2.39 -0.02 2.31 16 Total: -1.00 -69.04 397.47 4.43 -64.61 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 1.12 Total: 22.92 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 7.61 Total: 2.14 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -6.30 Total: -122.65 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.06 Total: -18.97 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.06 Total: 51.95 kcal Total: -69.04 4.43 -64.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091709609.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.205 kcal (2) G-P(sol) polarization free energy of solvation -69.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds