Wall clock time and date at job start Wed Apr 1 2020 04:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46910 * 2 1 4 4 H 1.09001 * 109.46959 * 304.99690 * 3 2 1 5 5 C 1.52991 * 109.47303 * 65.00039 * 3 2 1 6 6 N 1.46501 * 109.47057 * 185.00231 * 3 2 1 7 7 N 1.28440 * 125.18942 * 294.92923 * 6 3 2 8 8 C 1.30867 * 110.92881 * 179.97438 * 7 6 3 9 9 C 1.39678 * 107.85759 * 359.97438 * 8 7 6 10 10 C 1.36599 * 125.19151 * 114.62205 * 6 3 2 11 11 C 1.47162 * 126.88272 * 0.02562 * 10 6 3 12 12 O 1.21630 * 120.00424 * 4.97936 * 11 10 6 13 13 N 1.34774 * 119.99981 * 184.97751 * 11 10 6 14 14 C 1.46501 * 120.00218 * 184.86143 * 13 11 10 15 15 C 1.54328 * 111.68997 * 298.98457 * 14 13 11 16 16 C 1.55050 * 103.93554 * 262.78547 * 15 14 13 17 17 C 1.55053 * 102.11450 * 319.94617 * 16 15 14 18 18 C 1.54321 * 103.93434 * 40.05434 * 17 16 15 19 19 H 1.08996 * 111.01977 * 96.81625 * 18 17 16 20 20 C 1.53780 * 109.79164 * 221.69444 * 18 17 16 21 21 N 1.47211 * 106.38431 * 95.21771 * 20 18 17 22 22 C 1.36927 * 126.70551 * 211.28905 * 21 20 18 23 23 H 1.08000 * 120.00058 * 179.97438 * 22 21 20 24 24 C 1.38814 * 120.00254 * 359.97166 * 22 21 20 25 25 N 1.31622 * 119.99766 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00209 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46987 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47380 * 120.00148 * 26 24 22 29 29 H 1.48506 * 109.46845 * 239.99762 * 26 24 22 30 30 C 1.48679 * 107.08896 * 30.73993 * 21 20 18 31 31 H 1.08992 * 109.47333 * 60.00073 * 1 2 3 32 32 H 1.09004 * 109.46624 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46928 * 300.00129 * 1 2 3 34 34 H 1.09002 * 109.46928 * 239.99871 * 2 1 3 35 35 H 1.09002 * 109.47290 * 119.99795 * 2 1 3 36 36 H 1.09006 * 109.47074 * 300.00132 * 5 3 2 37 37 H 1.09001 * 109.47398 * 59.99920 * 5 3 2 38 38 H 1.09002 * 109.47427 * 180.02562 * 5 3 2 39 39 H 1.07997 * 126.06955 * 179.97438 * 8 7 6 40 40 H 1.08006 * 127.31457 * 180.02562 * 9 8 7 41 41 H 0.96994 * 120.00094 * 4.85248 * 13 11 10 42 42 H 1.08996 * 110.53257 * 21.39803 * 15 14 13 43 43 H 1.09002 * 110.53372 * 144.16875 * 15 14 13 44 44 H 1.08997 * 110.90421 * 78.14814 * 16 15 14 45 45 H 1.08999 * 110.90502 * 201.74414 * 16 15 14 46 46 H 1.09001 * 110.53928 * 158.66798 * 17 16 15 47 47 H 1.09000 * 110.53221 * 281.30681 * 17 16 15 48 48 H 1.08998 * 110.07293 * 214.45086 * 20 18 17 49 49 H 1.09000 * 110.07496 * 335.92824 * 20 18 17 50 50 H 0.96999 * 119.99778 * 180.02562 * 25 24 22 51 51 H 1.09003 * 110.91141 * 210.52659 * 30 21 20 52 52 H 1.09002 * 109.94350 * 88.52233 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 7 3.5000 1.4443 -0.1204 7 7 4.3154 0.9753 0.7541 8 6 5.5556 1.1207 0.3623 9 6 5.5397 1.7440 -0.8876 10 6 4.2017 1.9397 -1.1826 11 6 3.6464 2.5597 -2.3962 12 8 2.4491 2.7539 -2.4866 13 7 4.4645 2.9124 -3.4075 14 6 3.9277 3.6254 -4.5693 15 6 2.8563 2.7928 -5.3045 16 6 3.6347 2.1268 -6.4684 17 6 4.5713 3.2725 -6.9312 18 6 5.0289 3.9334 -5.6139 19 1 6.0007 3.5511 -5.3017 20 6 5.0240 5.4633 -5.7697 21 7 3.7291 5.9297 -5.2476 22 6 3.0199 7.0208 -5.6736 23 1 2.0750 7.2649 -5.2112 24 6 3.5155 7.8132 -6.7000 25 7 4.6669 7.5155 -7.2639 26 14 2.5483 9.3021 -7.2808 27 1 1.2961 9.4177 -6.4911 28 1 3.3665 10.5274 -7.0945 29 1 2.2134 9.1445 -8.7189 30 6 3.3244 4.9837 -4.1743 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.5489 2.1252 1.3969 37 1 2.0699 1.5876 2.1491 38 1 1.9981 3.1544 1.3071 39 1 6.4351 0.8133 0.9084 40 1 6.3905 2.0126 -1.4962 41 1 5.4087 2.6943 -3.3661 42 1 2.4388 2.0356 -4.6410 43 1 2.0688 3.4394 -5.6917 44 1 4.2112 1.2730 -6.1123 45 1 2.9577 1.8303 -7.2696 46 1 5.4265 2.8713 -7.4749 47 1 4.0263 3.9855 -7.5499 48 1 5.8393 5.9006 -5.1934 49 1 5.1233 5.7326 -6.8213 50 1 5.0134 8.0694 -7.9809 51 1 2.2389 4.9072 -4.1122 52 1 3.7323 5.3102 -3.2177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098860746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:05 Heat of formation + Delta-G solvation = 62.538795 kcal Electronic energy + Delta-G solvation = -32174.542938 eV Core-core repulsion = 28176.126705 eV Total energy + Delta-G solvation = -3998.416232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.63205 -40.12694 -38.02478 -36.65155 -34.40972 -33.58837 -31.70806 -31.49149 -30.87028 -29.35874 -29.13454 -27.69348 -25.15634 -24.67715 -24.56784 -23.16085 -22.35650 -21.15073 -20.58727 -20.21329 -19.23130 -18.81007 -17.77113 -16.90391 -16.08423 -15.95985 -15.65697 -15.34395 -14.86733 -14.66202 -14.51671 -14.24704 -13.95656 -13.79178 -13.53917 -13.48797 -13.22825 -13.13985 -12.81579 -12.61192 -12.48885 -12.03183 -11.99471 -11.85888 -11.39548 -11.23305 -11.07871 -11.04412 -10.93067 -10.83211 -10.67243 -10.58537 -10.32269 -10.26806 -10.07029 -9.98725 -9.95787 -9.71841 -9.51158 -9.25632 -9.09483 -8.79276 -8.64211 -6.87812 -5.65337 -3.09476 1.26804 2.29626 2.56602 3.25396 3.33746 3.39347 3.45544 3.47630 4.29635 4.45741 4.55983 4.61074 4.73511 4.90651 4.92377 5.05735 5.11460 5.12020 5.15750 5.28486 5.33538 5.46153 5.48207 5.52699 5.59823 5.63587 5.66360 5.69742 5.74494 5.81574 5.84507 5.98153 5.99362 6.01195 6.08186 6.10720 6.21937 6.32352 6.35534 6.43360 6.53205 6.61105 6.70965 6.72969 6.79373 6.93489 7.06126 7.40206 7.60079 7.61915 7.81784 8.02741 8.27519 8.39211 9.20322 9.79323 10.46345 11.35994 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.002988 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.021600 B = 9367.346062 C = 9796.592200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.129 3.871 4 H 0.139 0.861 5 C -0.159 4.159 6 N -0.249 5.249 7 N -0.278 5.278 8 C -0.008 4.008 9 C -0.193 4.193 10 C -0.033 4.033 11 C 0.589 3.411 12 O -0.535 6.535 13 N -0.692 5.692 14 C 0.159 3.841 15 C -0.112 4.112 16 C -0.126 4.126 17 C -0.109 4.109 18 C -0.112 4.112 19 H 0.070 0.930 20 C 0.142 3.858 21 N -0.594 5.594 22 C -0.214 4.214 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.922 5.922 26 Si 0.915 3.085 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.290 1.290 30 C 0.138 3.862 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.183 0.817 40 H 0.159 0.841 41 H 0.399 0.601 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.080 0.920 48 H 0.004 0.996 49 H 0.130 0.870 50 H 0.252 0.748 51 H 0.054 0.946 52 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.248 -16.407 11.646 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.029 3.971 4 H 0.157 0.843 5 C -0.216 4.216 6 N -0.037 5.037 7 N -0.111 5.111 8 C -0.184 4.184 9 C -0.222 4.222 10 C -0.161 4.161 11 C 0.374 3.626 12 O -0.413 6.413 13 N -0.342 5.342 14 C 0.073 3.927 15 C -0.151 4.151 16 C -0.163 4.163 17 C -0.146 4.146 18 C -0.132 4.132 19 H 0.088 0.912 20 C 0.017 3.983 21 N -0.318 5.318 22 C -0.343 4.343 23 H 0.097 0.903 24 C -0.208 4.208 25 N -0.572 5.572 26 Si 0.746 3.254 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.217 1.217 30 C 0.010 3.990 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.200 0.800 40 H 0.176 0.824 41 H 0.234 0.766 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.099 0.901 48 H 0.022 0.978 49 H 0.147 0.853 50 H 0.063 0.937 51 H 0.072 0.928 52 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -1.934 -16.430 12.306 20.618 hybrid contribution 0.813 0.923 -0.699 1.415 sum -1.121 -15.507 11.606 19.402 Atomic orbital electron populations 1.21784 0.94057 1.02349 1.02643 1.21826 0.96993 0.94630 1.03129 1.22217 0.72931 0.99104 1.02874 0.84320 1.22124 1.02476 1.01019 0.96010 1.45975 1.07439 1.39444 1.10829 1.73101 1.01443 1.18532 1.18007 1.23520 0.94450 1.04135 0.96297 1.22251 0.94869 1.06021 0.99087 1.21566 0.92253 1.08569 0.93753 1.16893 0.86179 0.78054 0.81472 1.90714 1.14497 1.55557 1.80500 1.45784 1.11600 1.57887 1.18891 1.21932 0.94582 0.92349 0.83827 1.22672 0.97280 0.98874 0.96252 1.22606 0.98293 0.97539 0.97888 1.22439 0.98484 0.96927 0.96792 1.23034 0.95669 1.00970 0.93559 0.91206 1.21985 0.86514 0.85577 1.04245 1.44790 1.20666 1.28017 1.38368 1.19163 1.01482 1.00307 1.13301 0.90331 1.24750 0.97367 0.99596 0.99040 1.69590 1.19510 1.39827 1.28226 0.85983 0.78902 0.82252 0.78311 1.20542 1.21793 1.21744 1.21831 0.97890 0.87395 0.91853 0.91893 0.92047 0.92040 0.91528 0.90853 0.90123 0.91218 0.91924 0.79953 0.82370 0.76599 0.91528 0.90266 0.92504 0.92086 0.92463 0.90121 0.97762 0.85261 0.93726 0.92779 0.96575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 37.16 0.36 -0.85 16 2 C -0.13 -1.27 5.66 -26.73 -0.15 -1.42 16 3 C 0.13 1.51 3.02 -67.93 -0.21 1.31 16 4 H 0.14 1.89 5.33 -51.93 -0.28 1.61 16 5 C -0.16 -1.61 9.06 37.15 0.34 -1.27 16 6 N -0.25 -3.30 3.09 -50.69 -0.16 -3.46 16 7 N -0.28 -3.57 11.52 30.59 0.35 -3.22 16 8 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 9 C -0.19 -2.19 10.50 -38.99 -0.41 -2.60 16 10 C -0.03 -0.45 6.96 -82.06 -0.57 -1.02 16 11 C 0.59 9.11 7.13 -12.64 -0.09 9.02 16 12 O -0.53 -9.47 12.25 5.25 0.06 -9.41 16 13 N -0.69 -10.18 5.17 -46.82 -0.24 -10.43 16 14 C 0.16 2.81 0.93 -129.73 -0.12 2.69 16 15 C -0.11 -1.92 5.48 -24.95 -0.14 -2.05 16 16 C -0.13 -1.88 6.92 -24.56 -0.17 -2.05 16 17 C -0.11 -1.82 6.25 -24.95 -0.16 -1.97 16 18 C -0.11 -2.00 3.63 -88.53 -0.32 -2.32 16 19 H 0.07 1.08 7.71 -51.93 -0.40 0.68 16 20 C 0.14 3.31 5.62 -3.25 -0.02 3.29 16 21 N -0.59 -14.97 3.42 -169.93 -0.58 -15.55 16 22 C -0.21 -5.90 10.33 -15.06 -0.16 -6.06 16 23 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 24 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 25 N -0.92 -26.03 10.08 55.49 0.56 -25.47 16 26 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 30 C 0.14 2.99 5.47 -2.43 -0.01 2.98 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.65 6.57 -51.93 -0.34 0.31 16 37 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.16 1.36 7.62 -52.48 -0.40 0.96 16 41 H 0.40 4.80 7.37 -40.82 -0.30 4.50 16 42 H 0.07 1.13 6.49 -51.93 -0.34 0.79 16 43 H 0.08 1.51 7.57 -51.93 -0.39 1.12 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 1.59 7.62 -51.93 -0.40 1.20 16 48 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 49 H 0.13 3.36 4.94 -51.93 -0.26 3.10 16 50 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 51 H 0.05 1.23 7.57 -51.93 -0.39 0.83 16 52 H 0.02 0.37 8.05 -51.93 -0.42 -0.04 16 LS Contribution 399.49 15.07 6.02 6.02 Total: -1.00 -30.94 399.49 -9.58 -40.52 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.45 Total: 7.20 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.13 Total: -3.06 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.07 Total: -58.12 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.06 Total: -9.41 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.94 -9.58 -40.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098860746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.059 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds