Wall clock time and date at job start Wed Apr 1 2020 04:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46910 * 2 1 4 4 H 1.09001 * 109.46959 * 304.99690 * 3 2 1 5 5 C 1.52991 * 109.47303 * 65.00039 * 3 2 1 6 6 N 1.46501 * 109.47057 * 185.00231 * 3 2 1 7 7 N 1.28440 * 125.18942 * 294.92923 * 6 3 2 8 8 C 1.30867 * 110.92881 * 179.97438 * 7 6 3 9 9 C 1.39678 * 107.85759 * 359.97438 * 8 7 6 10 10 C 1.36599 * 125.19151 * 114.62205 * 6 3 2 11 11 C 1.47162 * 126.88272 * 0.02562 * 10 6 3 12 12 O 1.21630 * 120.00424 * 4.97936 * 11 10 6 13 13 N 1.34774 * 119.99981 * 184.97751 * 11 10 6 14 14 C 1.46501 * 120.00218 * 184.86143 * 13 11 10 15 15 C 1.54328 * 111.68997 * 298.98457 * 14 13 11 16 16 C 1.55050 * 103.93554 * 262.78547 * 15 14 13 17 17 C 1.55053 * 102.11450 * 319.94617 * 16 15 14 18 18 C 1.54321 * 103.93434 * 40.05434 * 17 16 15 19 19 H 1.08996 * 111.01977 * 96.81625 * 18 17 16 20 20 C 1.53780 * 109.79164 * 221.69444 * 18 17 16 21 21 N 1.47211 * 106.38431 * 95.21771 * 20 18 17 22 22 C 1.36927 * 126.70551 * 211.28905 * 21 20 18 23 23 H 1.08000 * 120.00058 * 179.97438 * 22 21 20 24 24 C 1.38814 * 120.00254 * 359.97166 * 22 21 20 25 25 N 1.31622 * 119.99766 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00209 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46987 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47380 * 120.00148 * 26 24 22 29 29 H 1.48506 * 109.46845 * 239.99762 * 26 24 22 30 30 C 1.48679 * 107.08896 * 30.73993 * 21 20 18 31 31 H 1.08992 * 109.47333 * 60.00073 * 1 2 3 32 32 H 1.09004 * 109.46624 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46928 * 300.00129 * 1 2 3 34 34 H 1.09002 * 109.46928 * 239.99871 * 2 1 3 35 35 H 1.09002 * 109.47290 * 119.99795 * 2 1 3 36 36 H 1.09006 * 109.47074 * 300.00132 * 5 3 2 37 37 H 1.09001 * 109.47398 * 59.99920 * 5 3 2 38 38 H 1.09002 * 109.47427 * 180.02562 * 5 3 2 39 39 H 1.07997 * 126.06955 * 179.97438 * 8 7 6 40 40 H 1.08006 * 127.31457 * 180.02562 * 9 8 7 41 41 H 0.96994 * 120.00094 * 4.85248 * 13 11 10 42 42 H 1.08996 * 110.53257 * 21.39803 * 15 14 13 43 43 H 1.09002 * 110.53372 * 144.16875 * 15 14 13 44 44 H 1.08997 * 110.90421 * 78.14814 * 16 15 14 45 45 H 1.08999 * 110.90502 * 201.74414 * 16 15 14 46 46 H 1.09001 * 110.53928 * 158.66798 * 17 16 15 47 47 H 1.09000 * 110.53221 * 281.30681 * 17 16 15 48 48 H 1.08998 * 110.07293 * 214.45086 * 20 18 17 49 49 H 1.09000 * 110.07496 * 335.92824 * 20 18 17 50 50 H 0.96999 * 119.99778 * 180.02562 * 25 24 22 51 51 H 1.09003 * 110.91141 * 210.52659 * 30 21 20 52 52 H 1.09002 * 109.94350 * 88.52233 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 7 3.5000 1.4443 -0.1204 7 7 4.3154 0.9753 0.7541 8 6 5.5556 1.1207 0.3623 9 6 5.5397 1.7440 -0.8876 10 6 4.2017 1.9397 -1.1826 11 6 3.6464 2.5597 -2.3962 12 8 2.4491 2.7539 -2.4866 13 7 4.4645 2.9124 -3.4075 14 6 3.9277 3.6254 -4.5693 15 6 2.8563 2.7928 -5.3045 16 6 3.6347 2.1268 -6.4684 17 6 4.5713 3.2725 -6.9312 18 6 5.0289 3.9334 -5.6139 19 1 6.0007 3.5511 -5.3017 20 6 5.0240 5.4633 -5.7697 21 7 3.7291 5.9297 -5.2476 22 6 3.0199 7.0208 -5.6736 23 1 2.0750 7.2649 -5.2112 24 6 3.5155 7.8132 -6.7000 25 7 4.6669 7.5155 -7.2639 26 14 2.5483 9.3021 -7.2808 27 1 1.2961 9.4177 -6.4911 28 1 3.3665 10.5274 -7.0945 29 1 2.2134 9.1445 -8.7189 30 6 3.3244 4.9837 -4.1743 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.5489 2.1252 1.3969 37 1 2.0699 1.5876 2.1491 38 1 1.9981 3.1544 1.3071 39 1 6.4351 0.8133 0.9084 40 1 6.3905 2.0126 -1.4962 41 1 5.4087 2.6943 -3.3661 42 1 2.4388 2.0356 -4.6410 43 1 2.0688 3.4394 -5.6917 44 1 4.2112 1.2730 -6.1123 45 1 2.9577 1.8303 -7.2696 46 1 5.4265 2.8713 -7.4749 47 1 4.0263 3.9855 -7.5499 48 1 5.8393 5.9006 -5.1934 49 1 5.1233 5.7326 -6.8213 50 1 5.0134 8.0694 -7.9809 51 1 2.2389 4.9072 -4.1122 52 1 3.7323 5.3102 -3.2177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098860746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:03 Heat of formation + Delta-G solvation = 44.276976 kcal Electronic energy + Delta-G solvation = -32175.334829 eV Core-core repulsion = 28176.126705 eV Total energy + Delta-G solvation = -3999.208124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.56769 -41.53202 -39.41762 -37.49692 -36.20338 -34.87628 -33.39593 -32.52259 -32.02846 -30.89699 -29.94820 -29.35107 -26.44651 -26.31301 -25.85937 -24.37180 -23.20825 -22.43325 -22.19076 -21.36720 -20.44738 -20.15794 -19.15036 -18.56603 -17.21133 -17.09195 -16.97439 -16.68728 -16.17279 -15.99088 -15.73067 -15.48185 -15.23891 -15.07727 -14.90872 -14.71031 -14.63141 -14.43078 -14.16303 -13.66076 -13.60700 -13.22462 -13.11274 -12.85057 -12.81674 -12.77299 -12.69308 -12.20752 -12.14201 -12.10535 -12.02639 -11.87619 -11.83160 -11.73364 -11.67849 -11.66724 -11.58755 -11.41354 -10.84848 -10.73908 -10.32064 -10.04673 -9.95482 -8.91810 -7.75634 -5.23121 0.23907 1.34121 1.46718 1.46786 1.57263 1.69034 2.09349 2.20038 2.48820 3.30462 3.38219 3.44511 3.55452 3.70967 3.74740 3.82857 3.88386 3.94112 4.11169 4.16985 4.35182 4.37248 4.39133 4.40423 4.49020 4.51709 4.59702 4.61629 4.71423 4.73318 4.79497 4.85459 4.86681 4.91792 4.92853 4.94538 5.00830 5.04316 5.09754 5.19238 5.22251 5.28294 5.31460 5.41904 5.47765 5.56814 5.61225 5.69415 5.80717 5.82234 6.37980 6.45402 7.06476 7.11341 7.15074 7.73782 8.40822 9.22813 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.002988 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.021600 B = 9367.346062 C = 9796.592200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.122 3.878 4 H 0.117 0.883 5 C -0.152 4.152 6 N -0.257 5.257 7 N -0.291 5.291 8 C -0.008 4.008 9 C -0.179 4.179 10 C -0.062 4.062 11 C 0.589 3.411 12 O -0.564 6.564 13 N -0.682 5.682 14 C 0.175 3.825 15 C -0.109 4.109 16 C -0.111 4.111 17 C -0.105 4.105 18 C -0.101 4.101 19 H 0.107 0.893 20 C 0.144 3.856 21 N -0.613 5.613 22 C -0.237 4.237 23 H 0.072 0.928 24 C -0.059 4.059 25 N -0.941 5.941 26 Si 0.977 3.023 27 H -0.274 1.274 28 H -0.291 1.291 29 H -0.287 1.287 30 C 0.140 3.860 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.218 0.782 40 H 0.188 0.812 41 H 0.416 0.584 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.042 0.958 48 H -0.018 1.018 49 H 0.104 0.896 50 H 0.249 0.751 51 H 0.034 0.966 52 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 -18.533 12.373 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.023 3.977 4 H 0.134 0.866 5 C -0.209 4.209 6 N -0.046 5.046 7 N -0.124 5.124 8 C -0.183 4.183 9 C -0.207 4.207 10 C -0.190 4.190 11 C 0.375 3.625 12 O -0.444 6.444 13 N -0.333 5.333 14 C 0.087 3.913 15 C -0.148 4.148 16 C -0.148 4.148 17 C -0.143 4.143 18 C -0.121 4.121 19 H 0.125 0.875 20 C 0.019 3.981 21 N -0.338 5.338 22 C -0.366 4.366 23 H 0.090 0.910 24 C -0.252 4.252 25 N -0.590 5.590 26 Si 0.806 3.194 27 H -0.198 1.198 28 H -0.218 1.218 29 H -0.214 1.214 30 C 0.013 3.987 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.235 0.765 40 H 0.205 0.795 41 H 0.254 0.746 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.061 0.939 48 H 0.000 1.000 49 H 0.121 0.879 50 H 0.060 0.940 51 H 0.053 0.947 52 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -0.793 -18.585 13.051 22.723 hybrid contribution 0.483 1.623 -0.838 1.889 sum -0.310 -16.962 12.213 20.903 Atomic orbital electron populations 1.21780 0.92657 1.03290 1.02779 1.21755 0.98115 0.93206 1.02569 1.22260 0.72746 1.00106 1.02628 0.86570 1.22088 1.03742 0.99780 0.95298 1.46125 1.07861 1.39750 1.10851 1.73099 1.02314 1.18825 1.18168 1.24170 0.94787 1.03095 0.96255 1.22678 0.94501 1.04299 0.99268 1.21485 0.93470 1.10441 0.93633 1.17162 0.85804 0.77524 0.81971 1.90712 1.15902 1.56666 1.81094 1.45521 1.12421 1.57402 1.17956 1.21519 0.94647 0.90440 0.84667 1.22570 0.96638 0.98363 0.97185 1.22559 0.97886 0.97370 0.97005 1.22356 0.99531 0.96692 0.95684 1.22932 0.97571 0.97020 0.94559 0.87511 1.21838 0.85005 0.89286 1.01994 1.45013 1.21324 1.28235 1.39251 1.19404 1.01721 1.01651 1.13798 0.91018 1.25504 0.98401 1.02105 0.99147 1.69825 1.20468 1.40457 1.28286 0.85026 0.77806 0.78862 0.77721 1.19831 1.21752 1.21381 1.21841 0.96959 0.89369 0.90489 0.92853 0.90694 0.90801 0.92826 0.90475 0.88161 0.90844 0.93554 0.76530 0.79483 0.74623 0.91326 0.93269 0.89555 0.90919 0.89535 0.93896 0.99994 0.87865 0.94049 0.94713 0.97983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.67 71.98 0.70 -1.53 16 2 C -0.12 -2.27 5.66 30.60 0.17 -2.10 16 3 C 0.12 2.88 3.02 44.99 0.14 3.02 16 4 H 0.12 3.29 5.33 -2.39 -0.01 3.28 16 5 C -0.15 -3.01 9.06 71.98 0.65 -2.36 16 6 N -0.26 -6.63 3.09 -314.30 -0.97 -7.60 16 7 N -0.29 -6.96 11.52 -57.14 -0.66 -7.62 16 8 C -0.01 -0.15 12.03 85.18 1.02 0.87 16 9 C -0.18 -3.53 10.50 22.66 0.24 -3.29 16 10 C -0.06 -1.64 6.96 40.78 0.28 -1.35 16 11 C 0.59 17.99 7.13 86.59 0.62 18.61 16 12 O -0.56 -20.53 12.25 -4.13 -0.05 -20.58 16 13 N -0.68 -19.12 5.17 -420.28 -2.17 -21.29 16 14 C 0.17 6.10 0.93 4.96 0.00 6.10 16 15 C -0.11 -3.69 5.48 31.75 0.17 -3.52 16 16 C -0.11 -3.04 6.92 32.00 0.22 -2.82 16 17 C -0.10 -3.35 6.25 31.75 0.20 -3.15 16 18 C -0.10 -3.49 3.63 -9.44 -0.03 -3.52 16 19 H 0.11 2.93 7.71 -2.39 -0.02 2.92 16 20 C 0.14 6.87 5.62 86.51 0.49 7.35 16 21 N -0.61 -32.22 3.42 -691.54 -2.37 -34.58 16 22 C -0.24 -13.58 10.33 84.04 0.87 -12.71 16 23 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 24 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 25 N -0.94 -54.55 10.08 21.65 0.22 -54.33 16 26 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 27 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 28 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 29 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 30 C 0.14 6.36 5.47 86.22 0.47 6.83 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.07 0.92 6.56 -2.39 -0.02 0.90 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.53 6.57 -2.38 -0.02 1.52 16 37 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 38 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.22 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.19 2.44 7.62 -2.91 -0.02 2.42 16 41 H 0.42 8.78 7.37 -92.71 -0.68 8.09 16 42 H 0.07 2.30 6.49 -2.39 -0.02 2.28 16 43 H 0.05 1.95 7.57 -2.39 -0.02 1.93 16 44 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 46 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.04 1.70 7.62 -2.39 -0.02 1.68 16 48 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.10 5.54 4.94 -2.39 -0.01 5.53 16 50 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 51 H 0.03 1.68 7.57 -2.39 -0.02 1.66 16 52 H 0.00 0.11 8.05 -2.39 -0.02 0.09 16 Total: -1.00 -70.86 399.49 2.94 -67.92 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.24 Total: 26.60 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 6.68 Total: 3.58 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -5.95 Total: -125.43 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.05 Total: -20.58 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -70.86 2.94 -67.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098860746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.199 kcal (2) G-P(sol) polarization free energy of solvation -70.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds