Wall clock time and date at job start Wed Apr 1 2020 04:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.46966 * 2 1 4 4 N 1.46501 * 109.46916 * 180.02562 * 3 2 1 5 5 N 1.39938 * 125.75746 * 90.02465 * 4 3 2 6 6 C 1.30443 * 108.89616 * 179.97438 * 5 4 3 7 7 C 1.41284 * 108.02733 * 0.02562 * 6 5 4 8 8 C 1.47435 * 126.41526 * 180.02562 * 7 6 5 9 9 O 1.21605 * 119.99882 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00034 * 359.97438 * 8 7 6 11 11 C 1.46496 * 120.00065 * 179.97438 * 10 8 7 12 12 C 1.54328 * 111.69435 * 298.98854 * 11 10 8 13 13 C 1.55054 * 103.93267 * 262.78702 * 12 11 10 14 14 C 1.55051 * 102.11438 * 319.94104 * 13 12 11 15 15 C 1.54325 * 103.93422 * 40.05859 * 14 13 12 16 16 H 1.09008 * 111.01880 * 96.80854 * 15 14 13 17 17 C 1.53781 * 109.79117 * 221.68844 * 15 14 13 18 18 N 1.47214 * 106.37736 * 95.21860 * 17 15 14 19 19 C 1.36937 * 126.70431 * 211.28911 * 18 17 15 20 20 H 1.07992 * 120.00311 * 162.12480 * 19 18 17 21 21 C 1.38815 * 119.99855 * 342.11705 * 19 18 17 22 22 N 1.31613 * 120.00156 * 159.77280 * 21 19 18 23 23 Si 1.86801 * 119.99903 * 339.77481 * 21 19 18 24 24 H 1.48505 * 109.46947 * 84.67900 * 23 21 19 25 25 H 1.48496 * 109.47198 * 204.67895 * 23 21 19 26 26 H 1.48498 * 109.47503 * 324.68231 * 23 21 19 27 27 C 1.48676 * 107.09554 * 30.74256 * 18 17 15 28 28 C 1.34269 * 125.75259 * 269.71328 * 4 3 2 29 29 C 1.50702 * 126.29072 * 0.02562 * 28 4 3 30 30 H 1.09005 * 109.47635 * 300.00041 * 1 2 3 31 31 H 1.09000 * 109.47724 * 60.00108 * 1 2 3 32 32 H 1.08997 * 109.47271 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47509 * 239.99721 * 2 1 3 34 34 H 1.09006 * 109.47339 * 119.99652 * 2 1 3 35 35 H 1.08998 * 109.47043 * 299.99713 * 3 2 1 36 36 H 1.08997 * 109.47314 * 60.00102 * 3 2 1 37 37 H 1.08002 * 125.98564 * 180.02562 * 6 5 4 38 38 H 0.96998 * 119.99989 * 359.97438 * 10 8 7 39 39 H 1.09002 * 110.52985 * 21.39690 * 12 11 10 40 40 H 1.08993 * 110.53420 * 144.17028 * 12 11 10 41 41 H 1.08999 * 110.90298 * 78.14699 * 13 12 11 42 42 H 1.09000 * 110.90189 * 201.74302 * 13 12 11 43 43 H 1.09001 * 110.53766 * 158.66966 * 14 13 12 44 44 H 1.08996 * 110.53783 * 281.45060 * 14 13 12 45 45 H 1.08998 * 110.07266 * 214.44565 * 17 15 14 46 46 H 1.08993 * 110.07493 * 335.93416 * 17 15 14 47 47 H 0.96999 * 119.99911 * 180.02562 * 22 21 19 48 48 H 1.08996 * 110.91395 * 210.53263 * 27 18 17 49 49 H 1.08998 * 109.94591 * 88.52042 * 27 18 17 50 50 H 1.08997 * 109.46815 * 89.99874 * 29 28 4 51 51 H 1.08995 * 109.46789 * 209.99375 * 29 28 4 52 52 H 1.09000 * 109.46868 * 330.00049 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 7 4.3221 1.4432 -1.1366 6 6 5.5706 1.4435 -0.7587 7 6 5.6000 1.4425 0.6538 8 6 6.8044 1.4430 1.5042 9 8 6.6936 1.4424 2.7152 10 7 8.0281 1.4440 0.9394 11 6 9.2248 1.4451 1.7844 12 6 9.2889 2.6994 2.6811 13 6 10.2200 3.6661 1.9048 14 6 11.3119 2.7051 1.3678 15 6 10.5238 1.4487 0.9411 16 1 10.3119 1.4645 -0.1281 17 6 11.2885 0.1846 1.3679 18 7 10.7247 -0.2235 2.6651 19 6 11.3878 -0.8542 3.6837 20 1 10.9743 -0.8502 4.6813 21 6 12.5916 -1.4988 3.4340 22 7 13.4197 -1.7533 4.4247 23 14 13.0360 -2.0050 1.6917 24 1 13.6604 -0.8567 0.9866 25 1 13.9934 -3.1393 1.7348 26 1 11.8077 -2.4212 0.9684 27 6 9.2966 0.1901 2.6705 28 6 4.2899 1.4478 1.0887 29 6 3.8258 1.4543 2.5225 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 6.4312 1.4444 -1.4114 38 1 8.1164 1.4441 -0.0265 39 1 8.2971 3.1361 2.7991 40 1 9.7174 2.4534 3.6526 41 1 9.6860 4.1454 1.0844 42 1 10.6521 4.4107 2.5735 43 1 11.8216 3.1460 0.5111 44 1 12.0257 2.4598 2.1541 45 1 11.1442 -0.6063 0.6318 46 1 12.3501 0.4074 1.4739 47 1 14.2610 -2.2034 4.2501 48 1 8.9637 0.4263 3.6811 49 1 8.6785 -0.6020 2.2480 50 1 3.7143 0.4282 2.8728 51 1 4.5606 1.9711 3.1398 52 1 2.8670 1.9681 2.5917 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099094556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:09 Heat of formation + Delta-G solvation = 57.991165 kcal Electronic energy + Delta-G solvation = -31570.120308 eV Core-core repulsion = 27571.506876 eV Total energy + Delta-G solvation = -3998.613432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.66442 -40.10110 -37.97916 -35.83567 -34.51344 -33.52982 -32.56012 -31.68761 -31.48693 -29.68233 -28.46002 -27.20562 -26.67602 -25.12289 -24.19060 -22.67434 -22.51607 -21.09301 -20.70771 -20.25282 -19.30894 -18.83496 -17.58213 -16.94880 -16.07146 -15.86896 -15.74380 -15.39902 -15.02895 -14.61954 -14.55814 -14.24302 -13.99415 -13.82707 -13.62454 -13.40557 -13.28180 -13.21232 -12.99746 -12.86328 -12.72397 -12.51953 -12.28368 -11.98918 -11.86504 -11.49332 -11.36036 -11.28712 -11.03537 -10.99298 -10.86234 -10.70039 -10.63510 -10.36500 -10.31727 -10.03214 -9.86060 -9.61575 -9.45878 -9.34648 -8.87338 -8.71642 -8.50057 -7.00087 -5.86757 -3.17137 1.40442 2.06722 2.08768 3.36108 3.43897 3.52188 3.54220 3.61987 4.09534 4.27791 4.37630 4.51401 4.59516 4.63119 4.72749 4.78851 4.87944 4.95022 4.98107 5.08153 5.13873 5.16596 5.18689 5.33959 5.38212 5.47679 5.48515 5.53035 5.64713 5.68388 5.72095 5.77381 5.77455 5.89796 5.92703 5.97702 6.01931 6.21928 6.25486 6.27678 6.39598 6.51396 6.59848 6.64184 6.65887 6.75603 6.80955 6.81694 7.07836 7.37393 7.73376 7.84213 8.37600 8.56721 8.89115 9.74859 10.25393 11.29611 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016182 B = 0.002704 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.851268 B =10353.206334 C =10849.869606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.128 3.872 4 N -0.362 5.362 5 N -0.300 5.300 6 C 0.082 3.918 7 C -0.293 4.293 8 C 0.594 3.406 9 O -0.539 6.539 10 N -0.709 5.709 11 C 0.164 3.836 12 C -0.112 4.112 13 C -0.123 4.123 14 C -0.114 4.114 15 C -0.104 4.104 16 H 0.078 0.922 17 C 0.115 3.885 18 N -0.604 5.604 19 C -0.232 4.232 20 H 0.094 0.906 21 C 0.018 3.982 22 N -0.913 5.913 23 Si 0.883 3.117 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.275 1.275 27 C 0.141 3.859 28 C 0.157 3.843 29 C -0.099 4.099 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.187 0.813 38 H 0.394 0.606 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.023 0.977 46 H 0.067 0.933 47 H 0.262 0.738 48 H 0.064 0.936 49 H 0.023 0.977 50 H 0.087 0.913 51 H 0.109 0.891 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.831 10.396 -11.310 27.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.007 3.993 4 N -0.142 5.142 5 N -0.119 5.119 6 C -0.106 4.106 7 C -0.308 4.308 8 C 0.382 3.618 9 O -0.417 6.417 10 N -0.360 5.360 11 C 0.077 3.923 12 C -0.151 4.151 13 C -0.161 4.161 14 C -0.152 4.152 15 C -0.125 4.125 16 H 0.096 0.904 17 C -0.010 4.010 18 N -0.330 5.330 19 C -0.359 4.359 20 H 0.112 0.888 21 C -0.180 4.180 22 N -0.558 5.558 23 Si 0.714 3.286 24 H -0.213 1.213 25 H -0.232 1.232 26 H -0.201 1.201 27 C 0.014 3.986 28 C 0.025 3.975 29 C -0.157 4.157 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.204 0.796 38 H 0.228 0.772 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.041 0.959 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.041 0.959 50 H 0.105 0.895 51 H 0.127 0.873 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.650 10.252 -11.301 28.145 hybrid contribution 0.955 -0.530 -1.076 1.533 sum -22.696 9.722 -12.377 27.619 Atomic orbital electron populations 1.21693 0.94091 1.02686 1.02233 1.21936 0.96829 0.95551 1.03730 1.21872 0.73865 0.98827 1.04697 1.48507 1.06579 1.55730 1.03391 1.77146 1.01879 1.25329 1.07573 1.24000 0.95293 0.97284 0.93989 1.20091 0.93099 1.24111 0.93459 1.17116 0.81963 0.75697 0.87037 1.90742 1.86528 1.50591 1.13855 1.45788 1.04961 1.75669 1.09547 1.21664 0.82732 0.97136 0.90730 1.22682 0.99630 0.94060 0.98719 1.22576 0.96893 0.97391 0.99213 1.22486 0.97701 0.94217 1.00793 1.22781 0.94377 0.97180 0.98128 0.90398 1.21780 0.97790 0.92679 0.88800 1.45090 1.05326 1.68071 1.14492 1.18686 1.02630 1.26602 0.87946 0.88843 1.24950 0.96561 0.99698 0.96795 1.69814 1.09697 1.45305 1.30936 0.86989 0.77473 0.77783 0.86397 1.21333 1.23201 1.20097 1.21841 0.86408 0.92195 0.98125 1.21527 0.90089 0.94812 0.91082 1.20695 1.02299 1.04249 0.88467 0.92230 0.92238 0.91808 0.90802 0.91090 0.88440 0.88656 0.79570 0.77239 0.91281 0.90061 0.92249 0.91829 0.92146 0.90255 0.95918 0.91488 0.92820 0.91779 0.95878 0.89491 0.87280 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.15 0.37 -0.24 16 2 C -0.14 -0.86 6.26 -26.73 -0.17 -1.03 16 3 C 0.13 0.84 6.22 -4.04 -0.03 0.81 16 4 N -0.36 -3.73 3.58 -56.60 -0.20 -3.93 16 5 N -0.30 -3.56 12.50 30.86 0.39 -3.18 16 6 C 0.08 0.92 11.50 -16.98 -0.20 0.72 16 7 C -0.29 -3.76 6.13 -105.07 -0.64 -4.40 16 8 C 0.59 8.93 7.10 -12.52 -0.09 8.84 16 9 O -0.54 -9.53 12.76 5.27 0.07 -9.46 16 10 N -0.71 -10.04 5.18 -46.73 -0.24 -10.28 16 11 C 0.16 2.78 0.93 -129.72 -0.12 2.66 16 12 C -0.11 -1.85 5.50 -24.95 -0.14 -1.98 16 13 C -0.12 -1.72 6.92 -24.56 -0.17 -1.89 16 14 C -0.11 -1.76 6.26 -24.95 -0.16 -1.92 16 15 C -0.10 -1.74 3.63 -88.53 -0.32 -2.06 16 16 H 0.08 1.08 7.71 -51.92 -0.40 0.68 16 17 C 0.12 2.50 4.13 -3.25 -0.01 2.49 16 18 N -0.60 -14.89 3.24 -169.93 -0.55 -15.44 16 19 C -0.23 -6.68 10.66 -15.06 -0.16 -6.84 16 20 H 0.09 2.87 8.06 -52.49 -0.42 2.45 16 21 C 0.02 0.52 5.45 -17.43 -0.09 0.43 16 22 N -0.91 -28.51 13.97 55.49 0.78 -27.73 16 23 Si 0.88 22.87 24.36 -169.99 -4.14 18.73 16 24 H -0.29 -7.05 6.36 56.52 0.36 -6.69 16 25 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 26 H -0.28 -7.07 6.49 56.52 0.37 -6.70 16 27 C 0.14 3.02 5.36 -2.43 -0.01 3.00 16 28 C 0.16 1.79 7.01 -81.60 -0.57 1.22 16 29 C -0.10 -0.92 9.56 36.01 0.34 -0.58 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.43 7.01 -51.93 -0.36 0.06 16 37 H 0.19 1.50 7.50 -52.49 -0.39 1.10 16 38 H 0.39 4.42 7.25 -40.82 -0.30 4.12 16 39 H 0.07 1.13 6.64 -51.93 -0.35 0.79 16 40 H 0.08 1.51 7.56 -51.93 -0.39 1.12 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.42 7.61 -51.93 -0.40 1.03 16 45 H 0.02 0.51 6.16 -51.93 -0.32 0.19 16 46 H 0.07 1.55 5.26 -51.93 -0.27 1.28 16 47 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 48 H 0.06 1.45 7.52 -51.93 -0.39 1.06 16 49 H 0.02 0.52 8.05 -51.93 -0.42 0.10 16 50 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.11 1.23 6.52 -51.93 -0.34 0.90 16 52 H 0.07 0.43 7.05 -51.93 -0.37 0.06 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -34.83 397.69 -8.64 -43.47 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.56 Total: 2.59 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.17 Total: -0.78 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.17 Total: -60.55 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.07 Total: -9.46 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.14 Total: 18.73 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.83 -8.64 -43.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099094556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.460 kcal (2) G-P(sol) polarization free energy of solvation -34.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds