Wall clock time and date at job start Wed Apr 1 2020 04:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.46966 * 2 1 4 4 N 1.46501 * 109.46916 * 180.02562 * 3 2 1 5 5 N 1.39938 * 125.75746 * 90.02465 * 4 3 2 6 6 C 1.30443 * 108.89616 * 179.97438 * 5 4 3 7 7 C 1.41284 * 108.02733 * 0.02562 * 6 5 4 8 8 C 1.47435 * 126.41526 * 180.02562 * 7 6 5 9 9 O 1.21605 * 119.99882 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00034 * 359.97438 * 8 7 6 11 11 C 1.46496 * 120.00065 * 179.97438 * 10 8 7 12 12 C 1.54328 * 111.69435 * 298.98854 * 11 10 8 13 13 C 1.55054 * 103.93267 * 262.78702 * 12 11 10 14 14 C 1.55051 * 102.11438 * 319.94104 * 13 12 11 15 15 C 1.54325 * 103.93422 * 40.05859 * 14 13 12 16 16 H 1.09008 * 111.01880 * 96.80854 * 15 14 13 17 17 C 1.53781 * 109.79117 * 221.68844 * 15 14 13 18 18 N 1.47214 * 106.37736 * 95.21860 * 17 15 14 19 19 C 1.36937 * 126.70431 * 211.28911 * 18 17 15 20 20 H 1.07992 * 120.00311 * 162.12480 * 19 18 17 21 21 C 1.38815 * 119.99855 * 342.11705 * 19 18 17 22 22 N 1.31613 * 120.00156 * 159.77280 * 21 19 18 23 23 Si 1.86801 * 119.99903 * 339.77481 * 21 19 18 24 24 H 1.48505 * 109.46947 * 84.67900 * 23 21 19 25 25 H 1.48496 * 109.47198 * 204.67895 * 23 21 19 26 26 H 1.48498 * 109.47503 * 324.68231 * 23 21 19 27 27 C 1.48676 * 107.09554 * 30.74256 * 18 17 15 28 28 C 1.34269 * 125.75259 * 269.71328 * 4 3 2 29 29 C 1.50702 * 126.29072 * 0.02562 * 28 4 3 30 30 H 1.09005 * 109.47635 * 300.00041 * 1 2 3 31 31 H 1.09000 * 109.47724 * 60.00108 * 1 2 3 32 32 H 1.08997 * 109.47271 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47509 * 239.99721 * 2 1 3 34 34 H 1.09006 * 109.47339 * 119.99652 * 2 1 3 35 35 H 1.08998 * 109.47043 * 299.99713 * 3 2 1 36 36 H 1.08997 * 109.47314 * 60.00102 * 3 2 1 37 37 H 1.08002 * 125.98564 * 180.02562 * 6 5 4 38 38 H 0.96998 * 119.99989 * 359.97438 * 10 8 7 39 39 H 1.09002 * 110.52985 * 21.39690 * 12 11 10 40 40 H 1.08993 * 110.53420 * 144.17028 * 12 11 10 41 41 H 1.08999 * 110.90298 * 78.14699 * 13 12 11 42 42 H 1.09000 * 110.90189 * 201.74302 * 13 12 11 43 43 H 1.09001 * 110.53766 * 158.66966 * 14 13 12 44 44 H 1.08996 * 110.53783 * 281.45060 * 14 13 12 45 45 H 1.08998 * 110.07266 * 214.44565 * 17 15 14 46 46 H 1.08993 * 110.07493 * 335.93416 * 17 15 14 47 47 H 0.96999 * 119.99911 * 180.02562 * 22 21 19 48 48 H 1.08996 * 110.91395 * 210.53263 * 27 18 17 49 49 H 1.08998 * 109.94591 * 88.52042 * 27 18 17 50 50 H 1.08997 * 109.46815 * 89.99874 * 29 28 4 51 51 H 1.08995 * 109.46789 * 209.99375 * 29 28 4 52 52 H 1.09000 * 109.46868 * 330.00049 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 7 4.3221 1.4432 -1.1366 6 6 5.5706 1.4435 -0.7587 7 6 5.6000 1.4425 0.6538 8 6 6.8044 1.4430 1.5042 9 8 6.6936 1.4424 2.7152 10 7 8.0281 1.4440 0.9394 11 6 9.2248 1.4451 1.7844 12 6 9.2889 2.6994 2.6811 13 6 10.2200 3.6661 1.9048 14 6 11.3119 2.7051 1.3678 15 6 10.5238 1.4487 0.9411 16 1 10.3119 1.4645 -0.1281 17 6 11.2885 0.1846 1.3679 18 7 10.7247 -0.2235 2.6651 19 6 11.3878 -0.8542 3.6837 20 1 10.9743 -0.8502 4.6813 21 6 12.5916 -1.4988 3.4340 22 7 13.4197 -1.7533 4.4247 23 14 13.0360 -2.0050 1.6917 24 1 13.6604 -0.8567 0.9866 25 1 13.9934 -3.1393 1.7348 26 1 11.8077 -2.4212 0.9684 27 6 9.2966 0.1901 2.6705 28 6 4.2899 1.4478 1.0887 29 6 3.8258 1.4543 2.5225 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 6.4312 1.4444 -1.4114 38 1 8.1164 1.4441 -0.0265 39 1 8.2971 3.1361 2.7991 40 1 9.7174 2.4534 3.6526 41 1 9.6860 4.1454 1.0844 42 1 10.6521 4.4107 2.5735 43 1 11.8216 3.1460 0.5111 44 1 12.0257 2.4598 2.1541 45 1 11.1442 -0.6063 0.6318 46 1 12.3501 0.4074 1.4739 47 1 14.2610 -2.2034 4.2501 48 1 8.9637 0.4263 3.6811 49 1 8.6785 -0.6020 2.2480 50 1 3.7143 0.4282 2.8728 51 1 4.5606 1.9711 3.1398 52 1 2.8670 1.9681 2.5917 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099094556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:08 Heat of formation + Delta-G solvation = 34.090756 kcal Electronic energy + Delta-G solvation = -31571.156708 eV Core-core repulsion = 27571.506876 eV Total energy + Delta-G solvation = -3999.649832 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.52654 -41.44869 -39.28408 -36.41233 -36.28581 -34.70716 -33.78018 -33.36134 -32.31140 -31.12533 -29.97618 -28.24640 -27.29784 -26.64889 -25.93061 -23.74175 -23.06310 -22.64087 -22.08743 -21.19599 -20.37393 -20.20490 -19.03860 -18.35804 -17.55127 -16.90897 -16.66043 -16.55408 -16.15083 -15.89287 -15.62994 -15.57394 -15.24511 -15.20605 -15.00321 -14.72539 -14.57506 -14.25764 -14.05933 -13.83171 -13.69711 -13.29633 -13.18045 -13.09406 -13.01836 -12.90419 -12.79386 -12.54312 -12.31688 -12.22979 -12.06643 -11.92652 -11.89916 -11.70669 -11.70151 -11.62222 -11.48083 -11.36235 -10.85168 -10.68001 -10.38040 -10.04389 -9.56177 -9.07888 -8.16278 -5.44394 0.51698 1.18907 1.28507 1.35541 1.39369 1.48211 2.26908 2.41210 2.53094 3.06329 3.29073 3.38801 3.50079 3.58778 3.69737 3.78833 3.83994 3.92148 3.99928 4.18041 4.24358 4.29155 4.34476 4.39398 4.44766 4.48897 4.53621 4.58718 4.62293 4.64202 4.72463 4.77162 4.80276 4.90856 4.94045 4.98310 5.02017 5.03566 5.09292 5.11968 5.15297 5.21914 5.24902 5.29383 5.34284 5.45123 5.53468 5.60273 5.78475 5.91343 6.09403 6.53387 6.71761 6.76249 7.43357 7.51920 8.09885 9.03875 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016182 B = 0.002704 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.851268 B =10353.206334 C =10849.869606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.120 3.880 4 N -0.357 5.357 5 N -0.320 5.320 6 C 0.088 3.912 7 C -0.319 4.319 8 C 0.593 3.407 9 O -0.574 6.574 10 N -0.698 5.698 11 C 0.177 3.823 12 C -0.111 4.111 13 C -0.109 4.109 14 C -0.113 4.113 15 C -0.094 4.094 16 H 0.125 0.875 17 C 0.108 3.892 18 N -0.621 5.621 19 C -0.230 4.230 20 H 0.052 0.948 21 C -0.040 4.040 22 N -0.960 5.960 23 Si 0.951 3.049 24 H -0.260 1.260 25 H -0.309 1.309 26 H -0.269 1.269 27 C 0.143 3.857 28 C 0.155 3.845 29 C -0.096 4.096 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.216 0.784 38 H 0.412 0.588 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.045 0.955 45 H 0.026 0.974 46 H 0.053 0.947 47 H 0.263 0.737 48 H 0.035 0.965 49 H 0.012 0.988 50 H 0.087 0.913 51 H 0.087 0.913 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.490 12.273 -15.157 31.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.000 4.000 4 N -0.137 5.137 5 N -0.139 5.139 6 C -0.100 4.100 7 C -0.333 4.333 8 C 0.383 3.617 9 O -0.455 6.455 10 N -0.349 5.349 11 C 0.090 3.910 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.114 4.114 16 H 0.143 0.857 17 C -0.017 4.017 18 N -0.347 5.347 19 C -0.359 4.359 20 H 0.070 0.930 21 C -0.234 4.234 22 N -0.607 5.607 23 Si 0.779 3.221 24 H -0.186 1.186 25 H -0.237 1.237 26 H -0.195 1.195 27 C 0.017 3.983 28 C 0.022 3.978 29 C -0.154 4.154 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.232 0.768 38 H 0.250 0.750 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.054 0.946 49 H 0.030 0.970 50 H 0.106 0.894 51 H 0.105 0.895 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -25.359 12.160 -15.221 31.979 hybrid contribution 1.316 -1.137 0.252 1.757 sum -24.044 11.023 -14.969 30.392 Atomic orbital electron populations 1.21670 0.92398 1.02964 1.03221 1.21871 0.98183 0.95007 1.02419 1.22247 0.71866 0.99407 1.06455 1.48795 1.07696 1.54541 1.02626 1.77115 1.02323 1.25984 1.08489 1.24427 0.96012 0.96081 0.93462 1.20006 0.92656 1.26543 0.94143 1.17463 0.82684 0.74771 0.86830 1.90737 1.87035 1.52156 1.15558 1.45559 1.03747 1.75448 1.10193 1.21312 0.84409 0.94610 0.90702 1.22579 1.00129 0.94730 0.97511 1.22540 0.95755 0.96595 0.99770 1.22472 0.97438 0.93977 1.01170 1.22816 0.92988 0.95078 1.00510 0.85728 1.21939 0.97684 0.95092 0.86986 1.45126 1.06755 1.67930 1.14902 1.18544 1.02759 1.26794 0.87786 0.93033 1.25629 0.96519 1.00035 1.01167 1.69953 1.10413 1.46866 1.33456 0.85891 0.77232 0.77720 0.81273 1.18557 1.23737 1.19460 1.21867 0.84481 0.94127 0.97852 1.21812 0.90145 0.93805 0.92054 1.20693 1.03252 1.04435 0.87028 0.90964 0.91524 0.91927 0.92598 0.91925 0.87421 0.86185 0.76752 0.75009 0.91343 0.93622 0.89154 0.90980 0.88543 0.93656 0.95614 0.92926 0.92840 0.94635 0.96995 0.89404 0.89456 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.91 71.98 0.71 -0.15 16 2 C -0.14 -1.42 6.26 30.59 0.19 -1.23 16 3 C 0.12 1.26 6.22 86.38 0.54 1.80 16 4 N -0.36 -6.62 3.58 -332.98 -1.19 -7.81 16 5 N -0.32 -6.87 12.50 -56.28 -0.70 -7.58 16 6 C 0.09 1.74 11.50 85.65 0.99 2.72 16 7 C -0.32 -7.70 6.13 -20.15 -0.12 -7.82 16 8 C 0.59 17.33 7.10 86.67 0.62 17.95 16 9 O -0.57 -20.77 12.76 -4.05 -0.05 -20.82 16 10 N -0.70 -18.25 5.18 -420.01 -2.18 -20.42 16 11 C 0.18 5.83 0.93 4.96 0.00 5.83 16 12 C -0.11 -3.60 5.50 31.75 0.17 -3.42 16 13 C -0.11 -2.72 6.92 32.00 0.22 -2.50 16 14 C -0.11 -3.13 6.26 31.75 0.20 -2.93 16 15 C -0.09 -2.85 3.63 -9.44 -0.03 -2.88 16 16 H 0.12 2.70 7.71 -2.38 -0.02 2.68 16 17 C 0.11 4.52 4.13 86.51 0.36 4.87 16 18 N -0.62 -31.45 3.24 -691.55 -2.24 -33.70 16 19 C -0.23 -14.00 10.66 84.03 0.90 -13.10 16 20 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 21 C -0.04 -2.41 5.45 84.86 0.46 -1.95 16 22 N -0.96 -62.39 13.97 21.65 0.30 -62.09 16 23 Si 0.95 47.78 24.36 68.60 1.67 49.45 16 24 H -0.26 -11.91 6.36 99.48 0.63 -11.28 16 25 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 26 H -0.27 -13.14 6.49 99.48 0.65 -12.50 16 27 C 0.14 6.34 5.36 86.23 0.46 6.80 16 28 C 0.16 3.32 7.01 42.14 0.30 3.61 16 29 C -0.10 -1.70 9.56 71.24 0.68 -1.01 16 30 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.12 0.67 7.01 -2.39 -0.02 0.65 16 37 H 0.22 2.64 7.50 -2.91 -0.02 2.62 16 38 H 0.41 7.64 7.25 -92.71 -0.67 6.97 16 39 H 0.07 2.22 6.64 -2.39 -0.02 2.21 16 40 H 0.04 1.79 7.56 -2.39 -0.02 1.77 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.04 1.57 7.61 -2.39 -0.02 1.56 16 45 H 0.03 1.09 6.16 -2.39 -0.01 1.07 16 46 H 0.05 2.36 5.26 -2.39 -0.01 2.35 16 47 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 48 H 0.04 1.74 7.52 -2.39 -0.02 1.72 16 49 H 0.01 0.56 8.05 -2.39 -0.02 0.54 16 50 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 51 H 0.09 1.99 6.52 -2.39 -0.02 1.97 16 52 H 0.10 1.04 7.05 -2.39 -0.02 1.02 16 Total: -1.00 -81.21 397.69 2.37 -78.85 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.12 Total: 17.53 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 6.64 Total: 6.58 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -6.01 Total: -131.59 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.82 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.67 Total: 49.45 kcal Total: -81.21 2.37 -78.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099094556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.940 kcal (2) G-P(sol) polarization free energy of solvation -81.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds