Wall clock time and date at job start Wed Apr 1 2020 03:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46957 * 2 1 4 4 H 1.09008 * 109.46911 * 304.99929 * 3 2 1 5 5 C 1.53001 * 109.47663 * 65.00078 * 3 2 1 6 6 C 1.50700 * 109.47115 * 185.00380 * 3 2 1 7 7 O 1.21283 * 120.00264 * 359.97438 * 6 3 2 8 8 N 1.34781 * 120.00102 * 180.02562 * 6 3 2 9 9 C 1.46498 * 119.99873 * 179.97438 * 8 6 3 10 10 H 1.09003 * 110.76765 * 328.19221 * 9 8 6 11 11 C 1.55138 * 110.71159 * 91.39596 * 9 8 6 12 12 C 1.54906 * 101.65573 * 154.03495 * 11 9 8 13 13 N 1.47840 * 104.79510 * 322.92945 * 12 11 9 14 14 C 1.39003 * 111.00040 * 146.36267 * 13 12 11 15 15 C 1.39143 * 119.70007 * 58.88566 * 14 13 12 16 16 C 1.38299 * 119.08930 * 179.70917 * 15 14 13 17 17 C 1.38882 * 118.50919 * 0.55265 * 16 15 14 18 18 C 1.38024 * 119.32915 * 359.72846 * 17 16 15 19 19 C 1.50700 * 119.57019 * 179.97438 * 18 17 16 20 20 N 1.46496 * 109.47258 * 94.98185 * 19 18 17 21 21 C 1.36935 * 120.00539 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99443 * 0.02562 * 21 20 19 23 23 C 1.38804 * 120.00038 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99958 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00499 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46717 * 90.00054 * 25 23 21 27 27 H 1.48497 * 109.47166 * 209.99884 * 25 23 21 28 28 H 1.48503 * 109.46697 * 330.00231 * 25 23 21 29 29 N 1.31968 * 120.85503 * 359.97438 * 18 17 16 30 30 C 1.47446 * 108.56768 * 24.09731 * 13 12 11 31 31 H 1.09004 * 109.46953 * 60.00100 * 1 2 3 32 32 H 1.08990 * 109.47139 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46958 * 300.00102 * 1 2 3 34 34 H 1.08996 * 109.47201 * 240.00105 * 2 1 3 35 35 H 1.08996 * 109.46764 * 119.99781 * 2 1 3 36 36 H 1.08997 * 109.46803 * 59.99545 * 5 3 2 37 37 H 1.08993 * 109.47368 * 180.02562 * 5 3 2 38 38 H 1.09009 * 109.46513 * 299.99872 * 5 3 2 39 39 H 0.96994 * 119.99768 * 359.97438 * 8 6 3 40 40 H 1.09006 * 110.98929 * 35.93963 * 11 9 8 41 41 H 1.09000 * 111.02473 * 272.14445 * 11 9 8 42 42 H 1.08998 * 110.36925 * 204.09914 * 12 11 9 43 43 H 1.08993 * 110.46447 * 81.81035 * 12 11 9 44 44 H 1.07993 * 120.45626 * 359.97438 * 15 14 13 45 45 H 1.08003 * 120.74523 * 180.25966 * 16 15 14 46 46 H 1.08004 * 120.33754 * 179.74931 * 17 16 15 47 47 H 1.09004 * 109.46870 * 214.98178 * 19 18 17 48 48 H 1.09004 * 109.47242 * 334.97707 * 19 18 17 49 49 H 0.97004 * 119.99868 * 359.97438 * 20 19 18 50 50 H 0.96998 * 120.00544 * 179.97438 * 24 23 21 51 51 H 1.08996 * 109.88895 * 118.41939 * 30 13 12 52 52 H 1.09001 * 109.88694 * 239.60335 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4443 -0.1239 7 8 4.1451 0.3952 -0.2039 8 7 4.2149 2.6119 -0.1449 9 6 5.6750 2.6136 -0.2648 10 1 6.1031 1.7325 0.2134 11 6 6.1031 2.6921 -1.7539 12 6 7.5026 3.3468 -1.6430 13 7 7.3748 4.3272 -0.5439 14 6 8.5644 4.4366 0.1669 15 6 9.7283 4.8203 -0.4919 16 6 10.9035 4.9310 0.2288 17 6 10.8780 4.6420 1.5869 18 6 9.6887 4.2612 2.1749 19 6 9.6549 3.9458 3.6481 20 7 9.2409 5.1372 4.3932 21 6 9.1372 5.0898 5.7578 22 1 9.3610 4.1740 6.2848 23 6 8.7455 6.2189 6.4637 24 7 8.6463 6.1734 7.7754 25 14 8.3605 7.8034 5.5525 26 1 6.9194 7.8312 5.1951 27 1 8.6771 8.9643 6.4226 28 1 9.1789 7.8742 4.3153 29 7 8.5809 4.1697 1.4636 30 6 6.2703 3.9041 0.3365 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0699 1.5876 2.1491 37 1 1.9982 3.1544 1.3071 38 1 0.5489 2.1253 1.3968 39 1 3.7326 3.4509 -0.0806 40 1 5.4208 3.3230 -2.3236 41 1 6.1712 1.6973 -2.1942 42 1 7.7600 3.8518 -2.5740 43 1 8.2555 2.5977 -1.3978 44 1 9.7134 5.0329 -1.5506 45 1 11.8215 5.2308 -0.2548 46 1 11.7795 4.7149 2.1772 47 1 8.9456 3.1384 3.8306 48 1 10.6477 3.6384 3.9767 49 1 9.0403 5.9599 3.9199 50 1 8.3729 6.9625 8.2689 51 1 6.6502 3.7054 1.3387 52 1 5.5075 4.6818 0.3742 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128089844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:45 Heat of formation + Delta-G solvation = 22.024824 kcal Electronic energy + Delta-G solvation = -30339.248729 eV Core-core repulsion = 26339.075679 eV Total energy + Delta-G solvation = -4000.173050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97607 -40.13079 -38.47333 -35.76807 -35.19959 -34.49412 -32.54224 -32.19272 -30.95056 -30.06303 -29.20894 -28.39813 -26.16338 -25.55599 -23.50792 -22.95833 -22.33054 -21.51723 -20.96804 -20.84098 -20.03813 -17.99615 -17.44282 -17.14806 -16.80931 -16.19276 -15.86919 -15.70828 -15.12428 -14.78170 -14.49927 -14.44477 -14.15342 -14.04847 -13.82876 -13.69148 -13.25856 -13.05225 -13.00936 -12.80107 -12.64174 -12.43244 -12.39964 -12.23200 -12.07083 -11.99432 -11.88028 -11.77700 -11.60418 -11.17834 -11.12933 -11.04410 -10.99975 -10.87432 -10.18965 -9.97861 -9.92399 -9.62977 -9.52873 -9.30815 -9.15105 -8.91722 -8.08895 -7.25501 -5.77217 -3.13280 1.22136 1.39637 2.41968 2.85091 3.38508 3.43186 3.44818 3.46290 3.88258 4.22488 4.30715 4.37626 4.48117 4.57812 4.59736 4.62598 4.78298 4.92787 4.95759 5.01507 5.05421 5.10707 5.15931 5.17446 5.20460 5.24842 5.33588 5.47353 5.48211 5.53939 5.54458 5.58749 5.60935 5.67722 5.70094 5.72582 5.77582 5.79473 5.94268 5.97683 6.03598 6.08723 6.27378 6.28405 6.34891 6.45363 6.61329 6.71288 7.12669 7.25548 7.96660 8.00305 8.17791 8.41072 9.18808 9.91301 10.10879 11.40842 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008756 B = 0.002851 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.999685 B = 9820.194546 C =12115.880110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.110 4.110 4 H 0.096 0.904 5 C -0.148 4.148 6 C 0.518 3.482 7 O -0.539 6.539 8 N -0.718 5.718 9 C 0.128 3.872 10 H 0.100 0.900 11 C -0.139 4.139 12 C 0.052 3.948 13 N -0.466 5.466 14 C 0.298 3.702 15 C -0.190 4.190 16 C -0.058 4.058 17 C -0.183 4.183 18 C 0.159 3.841 19 C 0.203 3.797 20 N -0.746 5.746 21 C -0.243 4.243 22 H 0.093 0.907 23 C 0.007 3.993 24 N -0.933 5.933 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.278 1.278 29 N -0.504 5.504 30 C 0.022 3.978 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.402 0.598 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.362 0.638 50 H 0.260 0.740 51 H 0.116 0.884 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.779 -7.529 -24.019 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.132 4.132 4 H 0.114 0.886 5 C -0.206 4.206 6 C 0.305 3.695 7 O -0.415 6.415 8 N -0.370 5.370 9 C 0.021 3.979 10 H 0.118 0.882 11 C -0.179 4.179 12 C -0.074 4.074 13 N -0.184 5.184 14 C 0.066 3.934 15 C -0.212 4.212 16 C -0.084 4.084 17 C -0.204 4.204 18 C 0.021 3.979 19 C 0.076 3.924 20 N -0.392 5.392 21 C -0.373 4.373 22 H 0.110 0.890 23 C -0.189 4.189 24 N -0.580 5.580 25 Si 0.714 3.286 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.205 1.205 29 N -0.218 5.218 30 C -0.105 4.105 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.237 0.763 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.155 0.845 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.195 0.805 50 H 0.070 0.930 51 H 0.134 0.866 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.253 -8.156 -23.642 27.030 hybrid contribution 0.422 1.468 -0.701 1.681 sum -9.831 -6.688 -24.344 27.092 Atomic orbital electron populations 1.21848 0.95447 1.01948 1.01883 1.21344 0.95369 0.94115 1.03546 1.21365 0.91545 0.99564 1.00677 0.88582 1.21855 1.02468 1.00384 0.95847 1.20755 0.90085 0.83467 0.75203 1.90703 1.70319 1.31418 1.49088 1.45948 1.06945 1.08994 1.75109 1.22159 0.80436 0.99744 0.95517 0.88213 1.23146 0.96079 1.01562 0.97076 1.23079 0.97501 0.92684 0.94184 1.60811 1.02432 1.44846 1.10321 1.19867 0.89862 0.94207 0.89419 1.21417 0.92396 1.06227 1.01175 1.21432 0.97873 0.95194 0.93915 1.21966 0.99863 1.03195 0.95401 1.21547 0.87492 0.91995 0.96897 1.19593 0.98993 0.91412 0.82447 1.42560 1.83611 1.08664 1.04394 1.19033 1.38909 0.98788 0.80536 0.88957 1.24627 1.01446 0.97563 0.95230 1.69697 1.53970 1.29366 1.05012 0.86553 0.78421 0.84608 0.79001 1.21033 1.21657 1.20472 1.67249 1.30542 1.17515 1.06530 1.23224 0.92925 0.94984 0.99390 0.92775 0.92445 0.92319 0.91220 0.91189 0.91742 0.92020 0.91078 0.76301 0.90046 0.89936 0.89168 0.92247 0.85087 0.84822 0.84510 0.93636 0.93644 0.80494 0.93008 0.86576 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.16 0.36 -0.57 16 2 C -0.11 -0.86 4.75 -26.73 -0.13 -0.99 16 3 C -0.11 -0.84 2.72 -91.77 -0.25 -1.09 16 4 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 5 C -0.15 -1.02 8.84 37.16 0.33 -0.69 16 6 C 0.52 5.56 7.15 -10.98 -0.08 5.48 16 7 O -0.54 -7.93 15.57 5.55 0.09 -7.84 16 8 N -0.72 -6.67 5.07 -52.04 -0.26 -6.94 16 9 C 0.13 1.39 3.31 -66.11 -0.22 1.18 16 10 H 0.10 1.34 7.55 -51.93 -0.39 0.95 16 11 C -0.14 -1.27 6.76 -24.59 -0.17 -1.44 16 12 C 0.05 0.50 6.07 -2.30 -0.01 0.48 16 13 N -0.47 -5.80 5.20 -170.00 -0.88 -6.68 16 14 C 0.30 4.37 6.16 -155.02 -0.95 3.41 16 15 C -0.19 -2.37 9.37 -39.22 -0.37 -2.74 16 16 C -0.06 -0.71 10.17 -39.32 -0.40 -1.11 16 17 C -0.18 -2.70 9.71 -39.42 -0.38 -3.08 16 18 C 0.16 2.80 6.14 -82.61 -0.51 2.29 16 19 C 0.20 4.10 6.56 -5.20 -0.03 4.07 16 20 N -0.75 -18.37 5.40 -61.09 -0.33 -18.70 16 21 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 22 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 23 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 24 N -0.93 -29.49 13.97 55.49 0.78 -28.72 16 25 Si 0.88 22.71 27.73 -169.99 -4.71 17.99 16 26 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.28 -6.86 6.52 56.52 0.37 -6.50 16 29 N -0.50 -8.72 7.86 -8.67 -0.07 -8.79 16 30 C 0.02 0.28 6.52 -2.83 -0.02 0.26 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.33 6.57 -51.93 -0.34 -0.01 16 34 H 0.07 0.63 7.95 -51.93 -0.41 0.22 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.38 7.56 -51.93 -0.39 -0.02 16 38 H 0.07 0.39 6.57 -51.92 -0.34 0.05 16 39 H 0.40 2.79 7.78 -40.82 -0.32 2.47 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.60 7.78 -51.93 -0.40 0.20 16 44 H 0.13 1.30 7.97 -52.49 -0.42 0.88 16 45 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 46 H 0.14 1.83 8.06 -52.48 -0.42 1.41 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.05 0.87 8.04 -51.93 -0.42 0.45 16 49 H 0.36 8.99 5.52 -40.82 -0.23 8.77 16 50 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 51 H 0.12 1.82 5.91 -51.93 -0.31 1.51 16 52 H 0.08 0.95 7.72 -51.93 -0.40 0.55 16 LS Contribution 414.10 15.07 6.24 6.24 Total: -1.00 -34.84 414.10 -10.86 -45.69 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -8.61 Total: 9.28 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -3.09 Total: -1.55 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.77 Total: -69.82 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 17.99 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.84 -10.86 -45.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128089844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.716 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds