Wall clock time and date at job start Wed Apr 1 2020 03:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46957 * 2 1 4 4 H 1.09008 * 109.46911 * 304.99929 * 3 2 1 5 5 C 1.53001 * 109.47663 * 65.00078 * 3 2 1 6 6 C 1.50700 * 109.47115 * 185.00380 * 3 2 1 7 7 O 1.21283 * 120.00264 * 359.97438 * 6 3 2 8 8 N 1.34781 * 120.00102 * 180.02562 * 6 3 2 9 9 C 1.46498 * 119.99873 * 179.97438 * 8 6 3 10 10 H 1.09003 * 110.76765 * 328.19221 * 9 8 6 11 11 C 1.55138 * 110.71159 * 91.39596 * 9 8 6 12 12 C 1.54906 * 101.65573 * 154.03495 * 11 9 8 13 13 N 1.47840 * 104.79510 * 322.92945 * 12 11 9 14 14 C 1.39003 * 111.00040 * 146.36267 * 13 12 11 15 15 C 1.39143 * 119.70007 * 58.88566 * 14 13 12 16 16 C 1.38299 * 119.08930 * 179.70917 * 15 14 13 17 17 C 1.38882 * 118.50919 * 0.55265 * 16 15 14 18 18 C 1.38024 * 119.32915 * 359.72846 * 17 16 15 19 19 C 1.50700 * 119.57019 * 179.97438 * 18 17 16 20 20 N 1.46496 * 109.47258 * 94.98185 * 19 18 17 21 21 C 1.36935 * 120.00539 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99443 * 0.02562 * 21 20 19 23 23 C 1.38804 * 120.00038 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99958 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00499 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46717 * 90.00054 * 25 23 21 27 27 H 1.48497 * 109.47166 * 209.99884 * 25 23 21 28 28 H 1.48503 * 109.46697 * 330.00231 * 25 23 21 29 29 N 1.31968 * 120.85503 * 359.97438 * 18 17 16 30 30 C 1.47446 * 108.56768 * 24.09731 * 13 12 11 31 31 H 1.09004 * 109.46953 * 60.00100 * 1 2 3 32 32 H 1.08990 * 109.47139 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46958 * 300.00102 * 1 2 3 34 34 H 1.08996 * 109.47201 * 240.00105 * 2 1 3 35 35 H 1.08996 * 109.46764 * 119.99781 * 2 1 3 36 36 H 1.08997 * 109.46803 * 59.99545 * 5 3 2 37 37 H 1.08993 * 109.47368 * 180.02562 * 5 3 2 38 38 H 1.09009 * 109.46513 * 299.99872 * 5 3 2 39 39 H 0.96994 * 119.99768 * 359.97438 * 8 6 3 40 40 H 1.09006 * 110.98929 * 35.93963 * 11 9 8 41 41 H 1.09000 * 111.02473 * 272.14445 * 11 9 8 42 42 H 1.08998 * 110.36925 * 204.09914 * 12 11 9 43 43 H 1.08993 * 110.46447 * 81.81035 * 12 11 9 44 44 H 1.07993 * 120.45626 * 359.97438 * 15 14 13 45 45 H 1.08003 * 120.74523 * 180.25966 * 16 15 14 46 46 H 1.08004 * 120.33754 * 179.74931 * 17 16 15 47 47 H 1.09004 * 109.46870 * 214.98178 * 19 18 17 48 48 H 1.09004 * 109.47242 * 334.97707 * 19 18 17 49 49 H 0.97004 * 119.99868 * 359.97438 * 20 19 18 50 50 H 0.96998 * 120.00544 * 179.97438 * 24 23 21 51 51 H 1.08996 * 109.88895 * 118.41939 * 30 13 12 52 52 H 1.09001 * 109.88694 * 239.60335 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4443 -0.1239 7 8 4.1451 0.3952 -0.2039 8 7 4.2149 2.6119 -0.1449 9 6 5.6750 2.6136 -0.2648 10 1 6.1031 1.7325 0.2134 11 6 6.1031 2.6921 -1.7539 12 6 7.5026 3.3468 -1.6430 13 7 7.3748 4.3272 -0.5439 14 6 8.5644 4.4366 0.1669 15 6 9.7283 4.8203 -0.4919 16 6 10.9035 4.9310 0.2288 17 6 10.8780 4.6420 1.5869 18 6 9.6887 4.2612 2.1749 19 6 9.6549 3.9458 3.6481 20 7 9.2409 5.1372 4.3932 21 6 9.1372 5.0898 5.7578 22 1 9.3610 4.1740 6.2848 23 6 8.7455 6.2189 6.4637 24 7 8.6463 6.1734 7.7754 25 14 8.3605 7.8034 5.5525 26 1 6.9194 7.8312 5.1951 27 1 8.6771 8.9643 6.4226 28 1 9.1789 7.8742 4.3153 29 7 8.5809 4.1697 1.4636 30 6 6.2703 3.9041 0.3365 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0699 1.5876 2.1491 37 1 1.9982 3.1544 1.3071 38 1 0.5489 2.1253 1.3968 39 1 3.7326 3.4509 -0.0806 40 1 5.4208 3.3230 -2.3236 41 1 6.1712 1.6973 -2.1942 42 1 7.7600 3.8518 -2.5740 43 1 8.2555 2.5977 -1.3978 44 1 9.7134 5.0329 -1.5506 45 1 11.8215 5.2308 -0.2548 46 1 11.7795 4.7149 2.1772 47 1 8.9456 3.1384 3.8306 48 1 10.6477 3.6384 3.9767 49 1 9.0403 5.9599 3.9199 50 1 8.3729 6.9625 8.2689 51 1 6.6502 3.7054 1.3387 52 1 5.5075 4.6818 0.3742 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128089844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:44 Heat of formation + Delta-G solvation = -1.969282 kcal Electronic energy + Delta-G solvation = -30340.289192 eV Core-core repulsion = 26339.075679 eV Total energy + Delta-G solvation = -4001.213512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.97970 -41.05980 -39.46342 -36.91291 -36.39872 -35.66288 -33.98798 -33.46498 -32.49854 -30.81501 -30.22336 -29.41331 -27.66764 -26.21913 -24.65331 -24.43906 -23.35278 -22.70869 -22.01455 -21.79820 -20.79195 -19.96993 -18.41520 -18.15961 -17.72185 -17.31498 -16.83732 -16.73572 -16.49093 -16.03775 -15.86206 -15.35989 -15.24624 -15.21129 -14.85901 -14.73242 -14.43465 -14.33826 -14.10282 -13.93792 -13.77953 -13.58798 -13.42028 -13.39991 -12.99169 -12.90273 -12.81055 -12.76939 -12.59109 -12.54146 -12.45575 -12.18086 -11.97758 -11.86575 -11.73611 -11.61107 -11.09869 -10.99159 -10.80873 -10.64975 -10.32685 -10.13212 -9.38521 -9.14500 -8.07173 -5.41668 0.10191 0.35112 1.32969 1.35831 1.43277 1.56783 2.04120 2.43329 2.48662 2.75687 3.22528 3.28217 3.38766 3.62665 3.67097 3.77588 3.84341 3.89575 3.95395 3.98392 4.13737 4.16800 4.22201 4.26446 4.33033 4.38575 4.50164 4.59057 4.61728 4.65989 4.70569 4.76425 4.80783 4.82824 4.88554 4.92692 4.95248 5.00506 5.04886 5.07306 5.11057 5.19772 5.25844 5.34475 5.42327 5.48996 5.54565 5.60541 5.68761 6.08161 6.15841 6.48105 6.99662 7.04168 7.19257 7.73680 7.94405 9.14052 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008756 B = 0.002851 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.999685 B = 9820.194546 C =12115.880110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.102 4.102 4 H 0.126 0.874 5 C -0.146 4.146 6 C 0.513 3.487 7 O -0.586 6.586 8 N -0.707 5.707 9 C 0.132 3.868 10 H 0.065 0.935 11 C -0.127 4.127 12 C 0.053 3.947 13 N -0.463 5.463 14 C 0.282 3.718 15 C -0.177 4.177 16 C -0.048 4.048 17 C -0.186 4.186 18 C 0.128 3.872 19 C 0.204 3.796 20 N -0.747 5.747 21 C -0.235 4.235 22 H 0.062 0.938 23 C -0.057 4.057 24 N -0.979 5.979 25 Si 0.954 3.046 26 H -0.281 1.281 27 H -0.288 1.288 28 H -0.260 1.260 29 N -0.535 5.535 30 C 0.027 3.973 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.416 0.584 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.051 0.949 44 H 0.166 0.834 45 H 0.176 0.824 46 H 0.147 0.853 47 H 0.027 0.973 48 H 0.055 0.945 49 H 0.363 0.637 50 H 0.260 0.740 51 H 0.080 0.920 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 -5.418 -28.096 30.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.123 4.123 4 H 0.144 0.856 5 C -0.204 4.204 6 C 0.301 3.699 7 O -0.466 6.466 8 N -0.359 5.359 9 C 0.025 3.975 10 H 0.083 0.917 11 C -0.166 4.166 12 C -0.073 4.073 13 N -0.181 5.181 14 C 0.050 3.950 15 C -0.199 4.199 16 C -0.074 4.074 17 C -0.207 4.207 18 C -0.009 4.009 19 C 0.078 3.922 20 N -0.393 5.393 21 C -0.366 4.366 22 H 0.080 0.920 23 C -0.249 4.249 24 N -0.630 5.630 25 Si 0.782 3.218 26 H -0.207 1.207 27 H -0.214 1.214 28 H -0.185 1.185 29 N -0.249 5.249 30 C -0.101 4.101 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.254 0.746 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.138 0.862 43 H 0.070 0.930 44 H 0.184 0.816 45 H 0.194 0.806 46 H 0.165 0.835 47 H 0.045 0.955 48 H 0.073 0.927 49 H 0.196 0.804 50 H 0.069 0.931 51 H 0.098 0.902 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.666 -6.043 -27.755 30.342 hybrid contribution 0.572 0.683 0.526 1.035 sum -10.093 -5.360 -27.229 29.530 Atomic orbital electron populations 1.21814 0.93429 1.02415 1.02908 1.21324 0.97040 0.94218 1.01836 1.21396 0.89025 0.99659 1.02215 0.85604 1.21869 1.03633 1.00423 0.94455 1.21398 0.91443 0.82916 0.74105 1.90683 1.71475 1.33092 1.51343 1.45858 1.06324 1.09454 1.74289 1.21934 0.81207 0.97599 0.96790 0.91665 1.23076 0.96225 1.01927 0.95352 1.23218 0.97455 0.92330 0.94264 1.60973 1.01551 1.45308 1.10290 1.20283 0.91453 0.94476 0.88805 1.21848 0.91367 1.03935 1.02739 1.21877 0.99441 0.93437 0.92602 1.22117 0.98953 1.02699 0.96963 1.21111 0.89131 0.95302 0.95340 1.19579 0.98473 0.89292 0.84859 1.42535 1.83604 1.10129 1.03036 1.19019 1.37521 0.97608 0.82447 0.92048 1.25423 1.02101 1.01323 0.96058 1.69866 1.55772 1.30460 1.06857 0.85422 0.78327 0.79837 0.78234 1.20731 1.21429 1.18530 1.67140 1.30983 1.18567 1.08256 1.23077 0.93334 0.95837 0.97897 0.91334 0.92380 0.91587 0.92544 0.93433 0.93881 0.91004 0.89115 0.74622 0.88151 0.90026 0.86170 0.93028 0.81611 0.80622 0.83529 0.95476 0.92706 0.80409 0.93106 0.90193 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.67 71.98 0.70 -0.88 16 2 C -0.11 -1.72 4.75 30.59 0.15 -1.57 16 3 C -0.10 -1.44 2.72 -11.54 -0.03 -1.47 16 4 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 5 C -0.15 -1.83 8.84 71.98 0.64 -1.20 16 6 C 0.51 11.05 7.15 87.66 0.63 11.68 16 7 O -0.59 -18.12 15.57 -3.04 -0.05 -18.16 16 8 N -0.71 -12.75 5.07 -436.95 -2.21 -14.96 16 9 C 0.13 2.88 3.31 46.17 0.15 3.03 16 10 H 0.07 1.90 7.55 -2.39 -0.02 1.88 16 11 C -0.13 -2.08 6.76 31.98 0.22 -1.86 16 12 C 0.05 0.88 6.07 86.77 0.53 1.40 16 13 N -0.46 -10.63 5.20 -691.76 -3.60 -14.22 16 14 C 0.28 7.78 6.16 133.07 0.82 8.60 16 15 C -0.18 -3.74 9.37 22.50 0.21 -3.53 16 16 C -0.05 -0.98 10.17 22.44 0.23 -0.76 16 17 C -0.19 -5.14 9.71 22.37 0.22 -4.92 16 18 C 0.13 4.52 6.14 42.49 0.26 4.78 16 19 C 0.20 8.57 6.56 85.63 0.56 9.13 16 20 N -0.75 -37.46 5.40 -347.18 -1.87 -39.33 16 21 C -0.24 -13.95 10.47 84.03 0.88 -13.07 16 22 H 0.06 3.94 8.06 -2.91 -0.02 3.91 16 23 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 24 N -0.98 -63.74 13.97 21.65 0.30 -63.44 16 25 Si 0.95 47.31 27.73 68.60 1.90 49.22 16 26 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 27 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 28 H -0.26 -11.98 6.52 99.48 0.65 -11.34 16 29 N -0.53 -18.58 7.86 -181.34 -1.42 -20.00 16 30 C 0.03 0.66 6.52 86.65 0.56 1.22 16 31 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.61 6.57 -2.38 -0.02 0.59 16 34 H 0.06 1.05 7.95 -2.39 -0.02 1.03 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.75 7.56 -2.39 -0.02 0.73 16 38 H 0.09 0.80 6.57 -2.38 -0.02 0.79 16 39 H 0.42 5.09 7.78 -92.71 -0.72 4.37 16 40 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.12 1.33 8.14 -2.39 -0.02 1.32 16 43 H 0.05 0.96 7.78 -2.39 -0.02 0.94 16 44 H 0.17 2.34 7.97 -2.91 -0.02 2.32 16 45 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 46 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 47 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 48 H 0.06 2.17 8.04 -2.38 -0.02 2.15 16 49 H 0.36 17.92 5.52 -92.71 -0.51 17.41 16 50 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 51 H 0.08 2.63 5.91 -2.39 -0.01 2.61 16 52 H 0.09 2.06 7.72 -2.39 -0.02 2.04 16 Total: -1.00 -80.14 414.10 -0.14 -80.28 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.37 Total: 33.03 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 7.18 Total: 7.60 kcal Atomic # 7 Polarization: -143.15 SS G_CDS: -8.81 Total: -151.96 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.05 Total: -18.16 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.90 Total: 49.22 kcal Total: -80.14 -0.14 -80.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128089844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.308 kcal (2) G-P(sol) polarization free energy of solvation -80.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds