Wall clock time and date at job start Wed Apr 1 2020 03:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 H 1.08995 * 109.47201 * 305.00308 * 3 2 1 5 5 C 1.53000 * 109.46874 * 65.00130 * 3 2 1 6 6 C 1.50696 * 109.47219 * 184.99789 * 3 2 1 7 7 O 1.21284 * 119.99732 * 0.02562 * 6 3 2 8 8 N 1.34779 * 120.00279 * 180.02562 * 6 3 2 9 9 C 1.46496 * 119.99947 * 180.02562 * 8 6 3 10 10 H 1.09004 * 110.62925 * 31.89993 * 9 8 6 11 11 C 1.55136 * 110.70698 * 268.59738 * 9 8 6 12 12 C 1.54908 * 101.65552 * 205.96822 * 11 9 8 13 13 N 1.47848 * 104.79640 * 37.06842 * 12 11 9 14 14 C 1.38999 * 111.00041 * 213.64129 * 13 12 11 15 15 C 1.39143 * 119.70426 * 300.82164 * 14 13 12 16 16 C 1.38293 * 119.09769 * 180.02562 * 15 14 13 17 17 C 1.38882 * 118.50533 * 359.97438 * 16 15 14 18 18 C 1.38025 * 119.33045 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.57139 * 179.97438 * 18 17 16 20 20 N 1.46491 * 109.47106 * 94.99934 * 19 18 17 21 21 C 1.36937 * 119.99984 * 179.97438 * 20 19 18 22 22 H 1.08003 * 120.00191 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99977 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99832 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00140 * 0.02562 * 23 21 20 26 26 H 1.48508 * 109.46977 * 89.99650 * 25 23 21 27 27 H 1.48495 * 109.47468 * 209.99690 * 25 23 21 28 28 H 1.48496 * 109.47175 * 330.00379 * 25 23 21 29 29 N 1.31964 * 120.85385 * 0.02562 * 18 17 16 30 30 C 1.47447 * 108.56493 * 335.90739 * 13 12 11 31 31 H 1.08993 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46683 * 300.00193 * 1 2 3 33 33 H 1.09001 * 109.46904 * 59.99970 * 1 2 3 34 34 H 1.09002 * 109.46698 * 240.00053 * 2 1 3 35 35 H 1.08994 * 109.47206 * 120.00311 * 2 1 3 36 36 H 1.09006 * 109.47048 * 179.97438 * 5 3 2 37 37 H 1.09002 * 109.47304 * 299.99890 * 5 3 2 38 38 H 1.09001 * 109.47460 * 59.99929 * 5 3 2 39 39 H 0.97001 * 119.99752 * 0.02562 * 8 6 3 40 40 H 1.09002 * 110.99154 * 324.05819 * 11 9 8 41 41 H 1.08998 * 110.99081 * 87.87491 * 11 9 8 42 42 H 1.09005 * 110.36753 * 278.24049 * 12 11 9 43 43 H 1.08999 * 110.37522 * 155.90452 * 12 11 9 44 44 H 1.07997 * 120.44941 * 0.02562 * 15 14 13 45 45 H 1.07998 * 120.75102 * 180.02562 * 16 15 14 46 46 H 1.08004 * 120.33808 * 180.27517 * 17 16 15 47 47 H 1.08999 * 109.46486 * 215.00509 * 19 18 17 48 48 H 1.08995 * 109.46831 * 334.99827 * 19 18 17 49 49 H 0.97005 * 120.00364 * 359.97438 * 20 19 18 50 50 H 0.96993 * 119.99720 * 180.02562 * 24 23 21 51 51 H 1.08995 * 109.88647 * 120.39598 * 30 13 12 52 52 H 1.09001 * 109.88658 * 241.41713 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3951 -0.2046 8 7 4.2150 2.6118 -0.1447 9 6 5.6750 2.6135 -0.2656 10 1 6.0121 1.7642 -0.8600 11 6 6.3414 2.6065 1.1353 12 6 7.7071 3.2734 0.8355 13 7 7.4059 4.3160 -0.1686 14 6 8.4635 4.4726 -1.0568 15 6 9.7201 4.8286 -0.5767 16 6 10.7633 4.9815 -1.4716 17 6 10.5144 4.7721 -2.8218 18 6 9.2431 4.4207 -3.2284 19 6 8.9669 4.1927 -4.6923 20 7 9.0832 2.7640 -4.9945 21 6 8.8732 2.3148 -6.2709 22 1 8.6222 3.0139 -7.0550 23 6 8.9839 0.9610 -6.5573 24 7 8.7825 0.5294 -7.7843 25 14 9.4186 -0.2480 -5.2014 26 1 8.1733 -0.7395 -4.5586 27 1 10.1626 -1.3951 -5.7808 28 1 10.2651 0.4295 -4.1868 29 7 8.2662 4.2827 -2.3521 30 6 6.1701 3.9400 -0.8795 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.9991 3.1540 1.3076 37 1 0.5490 2.1252 1.3970 38 1 2.0699 1.5874 2.1492 39 1 3.7327 3.4509 -0.0797 40 1 5.7647 3.1997 1.8450 41 1 6.4758 1.5877 1.4987 42 1 8.4045 2.5425 0.4261 43 1 8.1159 3.7242 1.7398 44 1 9.8785 4.9833 0.4803 45 1 11.7495 5.2568 -1.1282 46 1 11.3086 4.8792 -3.5459 47 1 7.9590 4.5334 -4.9291 48 1 9.6885 4.7502 -5.2893 49 1 9.3089 2.1361 -4.2904 50 1 8.8595 -0.4166 -7.9844 51 1 5.4152 4.7148 -0.7462 52 1 6.3792 3.8050 -1.9407 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128089846.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:48 Heat of formation + Delta-G solvation = 22.305341 kcal Electronic energy + Delta-G solvation = -30576.232344 eV Core-core repulsion = 26576.071459 eV Total energy + Delta-G solvation = -4000.160886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.95106 -40.08858 -38.44420 -35.73433 -35.17585 -34.46599 -32.53635 -32.16888 -30.93141 -30.05882 -29.18765 -28.37193 -26.15555 -25.54862 -23.48970 -22.93245 -22.29631 -21.52538 -20.94466 -20.80612 -19.97862 -17.98985 -17.43969 -17.12969 -16.74464 -16.19343 -15.80804 -15.69197 -15.03426 -14.77427 -14.55379 -14.48511 -14.21588 -13.85033 -13.78535 -13.64705 -13.22093 -13.10405 -13.04233 -12.69716 -12.63606 -12.45257 -12.39900 -12.30441 -12.04320 -11.93495 -11.87202 -11.71755 -11.53777 -11.15239 -11.08947 -11.06134 -10.95757 -10.85529 -10.17660 -9.97878 -9.86028 -9.61066 -9.52703 -9.26569 -9.13210 -8.90705 -8.09056 -7.24624 -5.76421 -3.12392 1.22576 1.39781 2.49385 2.89390 3.40053 3.44059 3.45133 3.48721 3.92330 4.25450 4.35018 4.40301 4.51055 4.59469 4.61127 4.64022 4.83641 4.92963 4.98932 5.05375 5.06774 5.14537 5.18025 5.18677 5.21463 5.24949 5.34400 5.47638 5.51046 5.55186 5.55594 5.61211 5.62826 5.65545 5.69688 5.78066 5.78396 5.85126 5.94610 6.00281 6.08849 6.09449 6.28577 6.32328 6.35675 6.46150 6.60711 6.71976 7.13499 7.30854 7.97197 8.07610 8.18029 8.42017 9.19542 9.92214 10.11420 11.41648 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007957 B = 0.003297 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.285004 B = 8490.207340 C =11071.682610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.111 4.111 4 H 0.098 0.902 5 C -0.144 4.144 6 C 0.517 3.483 7 O -0.535 6.535 8 N -0.719 5.719 9 C 0.126 3.874 10 H 0.101 0.899 11 C -0.139 4.139 12 C 0.050 3.950 13 N -0.466 5.466 14 C 0.298 3.702 15 C -0.189 4.189 16 C -0.058 4.058 17 C -0.183 4.183 18 C 0.159 3.841 19 C 0.203 3.797 20 N -0.746 5.746 21 C -0.244 4.244 22 H 0.093 0.907 23 C 0.009 3.991 24 N -0.932 5.932 25 Si 0.882 3.118 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.279 1.279 29 N -0.504 5.504 30 C 0.023 3.977 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.400 0.600 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.362 0.638 50 H 0.260 0.740 51 H 0.082 0.918 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 8.982 23.500 27.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.133 4.133 4 H 0.117 0.883 5 C -0.202 4.202 6 C 0.303 3.697 7 O -0.410 6.410 8 N -0.370 5.370 9 C 0.020 3.980 10 H 0.119 0.881 11 C -0.178 4.178 12 C -0.076 4.076 13 N -0.184 5.184 14 C 0.066 3.934 15 C -0.212 4.212 16 C -0.084 4.084 17 C -0.204 4.204 18 C 0.021 3.979 19 C 0.076 3.924 20 N -0.392 5.392 21 C -0.374 4.374 22 H 0.111 0.889 23 C -0.187 4.187 24 N -0.580 5.580 25 Si 0.712 3.288 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.205 1.205 29 N -0.218 5.218 30 C -0.104 4.104 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.235 0.765 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.155 0.845 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.194 0.806 50 H 0.070 0.930 51 H 0.100 0.900 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.592 8.451 23.163 26.835 hybrid contribution 1.084 -0.851 0.893 1.642 sum -9.509 7.600 24.056 26.960 Atomic orbital electron populations 1.21843 0.95442 1.01972 1.01812 1.21352 0.95366 0.94105 1.03655 1.21364 0.91650 0.99641 1.00597 0.88345 1.21825 1.02403 1.00089 0.95860 1.20750 0.90021 0.83544 0.75386 1.90731 1.70316 1.31388 1.48598 1.45920 1.06917 1.08888 1.75320 1.22179 0.80007 0.99581 0.96261 0.88081 1.23134 0.95428 1.01596 0.97615 1.23095 0.97619 0.91665 0.95195 1.60825 1.02114 1.42560 1.12903 1.19874 0.90078 0.94413 0.89041 1.21416 0.92511 1.06379 1.00882 1.21429 0.98817 0.95257 0.92928 1.21966 0.98246 1.03641 0.96574 1.21553 0.88466 0.91517 0.96399 1.19596 0.99952 0.87553 0.85327 1.42559 1.86379 1.01556 1.08748 1.19027 1.40358 0.92813 0.85162 0.88927 1.24618 1.01590 0.96553 0.95975 1.69693 1.56017 1.14434 1.17822 0.86591 0.78410 0.81691 0.82110 1.20937 1.21583 1.20547 1.67259 1.35792 1.16968 1.01789 1.23206 0.90627 0.94821 1.01782 0.92430 0.92524 0.92613 0.90931 0.91377 0.92217 0.91122 0.92103 0.76464 0.90051 0.89932 0.92195 0.89116 0.85090 0.84826 0.84514 0.93599 0.93632 0.80567 0.92994 0.89974 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.67 37.16 0.36 -0.68 16 2 C -0.11 -0.97 4.75 -26.73 -0.13 -1.10 16 3 C -0.11 -0.92 2.73 -91.77 -0.25 -1.17 16 4 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 5 C -0.14 -0.84 8.84 37.16 0.33 -0.52 16 6 C 0.52 6.09 7.15 -10.99 -0.08 6.01 16 7 O -0.53 -8.79 15.56 5.55 0.09 -8.71 16 8 N -0.72 -7.14 5.07 -52.04 -0.26 -7.40 16 9 C 0.13 1.52 3.31 -66.11 -0.22 1.30 16 10 H 0.10 1.59 7.55 -51.93 -0.39 1.20 16 11 C -0.14 -1.39 6.76 -24.59 -0.17 -1.56 16 12 C 0.05 0.53 6.08 -2.30 -0.01 0.52 16 13 N -0.47 -5.80 5.20 -169.99 -0.88 -6.69 16 14 C 0.30 4.37 6.15 -155.03 -0.95 3.41 16 15 C -0.19 -2.37 9.38 -39.23 -0.37 -2.74 16 16 C -0.06 -0.72 10.17 -39.32 -0.40 -1.11 16 17 C -0.18 -2.70 9.71 -39.42 -0.38 -3.09 16 18 C 0.16 2.80 6.14 -82.61 -0.51 2.29 16 19 C 0.20 4.11 6.56 -5.20 -0.03 4.08 16 20 N -0.75 -18.49 5.40 -61.09 -0.33 -18.82 16 21 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 22 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 23 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 24 N -0.93 -29.75 13.97 55.49 0.78 -28.98 16 25 Si 0.88 23.18 27.74 -169.99 -4.71 18.47 16 26 H -0.28 -7.55 7.11 56.52 0.40 -7.15 16 27 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 28 H -0.28 -7.00 6.52 56.52 0.37 -6.63 16 29 N -0.50 -8.73 7.86 -8.67 -0.07 -8.80 16 30 C 0.02 0.29 6.52 -2.83 -0.02 0.27 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.81 7.95 -51.93 -0.41 0.39 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.28 7.56 -51.93 -0.39 -0.12 16 37 H 0.07 0.33 6.57 -51.93 -0.34 -0.01 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.40 2.79 7.78 -40.82 -0.32 2.47 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.71 7.78 -51.93 -0.40 0.31 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.13 1.30 7.97 -52.49 -0.42 0.88 16 45 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.14 1.83 8.06 -52.48 -0.42 1.41 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.05 0.87 8.04 -51.93 -0.42 0.46 16 49 H 0.36 9.07 5.52 -40.82 -0.23 8.84 16 50 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 51 H 0.08 0.87 7.72 -51.93 -0.40 0.47 16 52 H 0.12 1.83 5.91 -51.93 -0.31 1.52 16 LS Contribution 414.11 15.07 6.24 6.24 Total: -1.00 -35.40 414.11 -10.85 -46.26 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -8.61 Total: 9.56 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -3.08 Total: -1.14 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -0.77 Total: -70.68 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.71 Total: 18.47 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.40 -10.85 -46.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128089846.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.565 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds