Wall clock time and date at job start Wed Apr 1 2020 03:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 H 1.08995 * 109.47201 * 305.00308 * 3 2 1 5 5 C 1.53000 * 109.46874 * 65.00130 * 3 2 1 6 6 C 1.50696 * 109.47219 * 184.99789 * 3 2 1 7 7 O 1.21284 * 119.99732 * 0.02562 * 6 3 2 8 8 N 1.34779 * 120.00279 * 180.02562 * 6 3 2 9 9 C 1.46496 * 119.99947 * 180.02562 * 8 6 3 10 10 H 1.09004 * 110.62925 * 31.89993 * 9 8 6 11 11 C 1.55136 * 110.70698 * 268.59738 * 9 8 6 12 12 C 1.54908 * 101.65552 * 205.96822 * 11 9 8 13 13 N 1.47848 * 104.79640 * 37.06842 * 12 11 9 14 14 C 1.38999 * 111.00041 * 213.64129 * 13 12 11 15 15 C 1.39143 * 119.70426 * 300.82164 * 14 13 12 16 16 C 1.38293 * 119.09769 * 180.02562 * 15 14 13 17 17 C 1.38882 * 118.50533 * 359.97438 * 16 15 14 18 18 C 1.38025 * 119.33045 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.57139 * 179.97438 * 18 17 16 20 20 N 1.46491 * 109.47106 * 94.99934 * 19 18 17 21 21 C 1.36937 * 119.99984 * 179.97438 * 20 19 18 22 22 H 1.08003 * 120.00191 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99977 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99832 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00140 * 0.02562 * 23 21 20 26 26 H 1.48508 * 109.46977 * 89.99650 * 25 23 21 27 27 H 1.48495 * 109.47468 * 209.99690 * 25 23 21 28 28 H 1.48496 * 109.47175 * 330.00379 * 25 23 21 29 29 N 1.31964 * 120.85385 * 0.02562 * 18 17 16 30 30 C 1.47447 * 108.56493 * 335.90739 * 13 12 11 31 31 H 1.08993 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46683 * 300.00193 * 1 2 3 33 33 H 1.09001 * 109.46904 * 59.99970 * 1 2 3 34 34 H 1.09002 * 109.46698 * 240.00053 * 2 1 3 35 35 H 1.08994 * 109.47206 * 120.00311 * 2 1 3 36 36 H 1.09006 * 109.47048 * 179.97438 * 5 3 2 37 37 H 1.09002 * 109.47304 * 299.99890 * 5 3 2 38 38 H 1.09001 * 109.47460 * 59.99929 * 5 3 2 39 39 H 0.97001 * 119.99752 * 0.02562 * 8 6 3 40 40 H 1.09002 * 110.99154 * 324.05819 * 11 9 8 41 41 H 1.08998 * 110.99081 * 87.87491 * 11 9 8 42 42 H 1.09005 * 110.36753 * 278.24049 * 12 11 9 43 43 H 1.08999 * 110.37522 * 155.90452 * 12 11 9 44 44 H 1.07997 * 120.44941 * 0.02562 * 15 14 13 45 45 H 1.07998 * 120.75102 * 180.02562 * 16 15 14 46 46 H 1.08004 * 120.33808 * 180.27517 * 17 16 15 47 47 H 1.08999 * 109.46486 * 215.00509 * 19 18 17 48 48 H 1.08995 * 109.46831 * 334.99827 * 19 18 17 49 49 H 0.97005 * 120.00364 * 359.97438 * 20 19 18 50 50 H 0.96993 * 119.99720 * 180.02562 * 24 23 21 51 51 H 1.08995 * 109.88647 * 120.39598 * 30 13 12 52 52 H 1.09001 * 109.88658 * 241.41713 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3951 -0.2046 8 7 4.2150 2.6118 -0.1447 9 6 5.6750 2.6135 -0.2656 10 1 6.0121 1.7642 -0.8600 11 6 6.3414 2.6065 1.1353 12 6 7.7071 3.2734 0.8355 13 7 7.4059 4.3160 -0.1686 14 6 8.4635 4.4726 -1.0568 15 6 9.7201 4.8286 -0.5767 16 6 10.7633 4.9815 -1.4716 17 6 10.5144 4.7721 -2.8218 18 6 9.2431 4.4207 -3.2284 19 6 8.9669 4.1927 -4.6923 20 7 9.0832 2.7640 -4.9945 21 6 8.8732 2.3148 -6.2709 22 1 8.6222 3.0139 -7.0550 23 6 8.9839 0.9610 -6.5573 24 7 8.7825 0.5294 -7.7843 25 14 9.4186 -0.2480 -5.2014 26 1 8.1733 -0.7395 -4.5586 27 1 10.1626 -1.3951 -5.7808 28 1 10.2651 0.4295 -4.1868 29 7 8.2662 4.2827 -2.3521 30 6 6.1701 3.9400 -0.8795 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.9991 3.1540 1.3076 37 1 0.5490 2.1252 1.3970 38 1 2.0699 1.5874 2.1492 39 1 3.7327 3.4509 -0.0797 40 1 5.7647 3.1997 1.8450 41 1 6.4758 1.5877 1.4987 42 1 8.4045 2.5425 0.4261 43 1 8.1159 3.7242 1.7398 44 1 9.8785 4.9833 0.4803 45 1 11.7495 5.2568 -1.1282 46 1 11.3086 4.8792 -3.5459 47 1 7.9590 4.5334 -4.9291 48 1 9.6885 4.7502 -5.2893 49 1 9.3089 2.1361 -4.2904 50 1 8.8595 -0.4166 -7.9844 51 1 5.4152 4.7148 -0.7462 52 1 6.3792 3.8050 -1.9407 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128089846.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:47 Heat of formation + Delta-G solvation = -2.512646 kcal Electronic energy + Delta-G solvation = -30577.308533 eV Core-core repulsion = 26576.071459 eV Total energy + Delta-G solvation = -4001.237074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.98398 -41.07621 -39.47131 -36.92713 -36.41174 -35.68584 -34.00156 -33.47527 -32.51085 -30.82735 -30.24071 -29.40718 -27.67300 -26.20425 -24.66809 -24.44496 -23.37469 -22.72410 -22.02306 -21.83045 -20.79032 -19.99731 -18.46421 -18.17013 -17.71155 -17.32689 -16.82769 -16.76395 -16.49115 -16.03005 -15.86143 -15.56922 -15.37599 -14.98582 -14.90173 -14.70153 -14.44544 -14.32716 -14.17284 -13.84000 -13.79891 -13.68409 -13.56376 -13.26166 -12.99120 -12.97739 -12.81716 -12.76307 -12.58298 -12.54601 -12.49139 -12.20674 -12.00615 -11.90032 -11.73801 -11.63281 -11.13395 -11.00917 -10.82187 -10.63251 -10.34832 -10.15259 -9.40185 -9.15905 -8.10524 -5.43642 0.10056 0.34587 1.26473 1.31487 1.36322 1.56489 2.02119 2.38679 2.43986 2.80882 3.20121 3.26401 3.37890 3.59419 3.65822 3.77776 3.83270 3.88921 3.95367 3.97168 4.12934 4.15797 4.20955 4.25417 4.32423 4.37658 4.50949 4.57526 4.61408 4.64948 4.72059 4.76560 4.79137 4.81498 4.89370 4.92172 4.96939 5.01483 5.03695 5.06491 5.09469 5.19288 5.25495 5.34410 5.40987 5.47896 5.53313 5.58548 5.66995 6.07293 6.13264 6.48110 6.97161 7.03606 7.20106 7.71954 7.91304 9.10748 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007957 B = 0.003297 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.285004 B = 8490.207340 C =11071.682610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.105 4.105 4 H 0.115 0.885 5 C -0.139 4.139 6 C 0.510 3.490 7 O -0.590 6.590 8 N -0.704 5.704 9 C 0.127 3.873 10 H 0.054 0.946 11 C -0.126 4.126 12 C 0.051 3.949 13 N -0.457 5.457 14 C 0.281 3.719 15 C -0.176 4.176 16 C -0.048 4.048 17 C -0.185 4.185 18 C 0.128 3.872 19 C 0.204 3.796 20 N -0.749 5.749 21 C -0.231 4.231 22 H 0.067 0.933 23 C -0.054 4.054 24 N -0.977 5.977 25 Si 0.946 3.054 26 H -0.292 1.292 27 H -0.285 1.285 28 H -0.259 1.259 29 N -0.534 5.534 30 C 0.029 3.971 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.418 0.582 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.042 0.958 43 H 0.125 0.875 44 H 0.167 0.833 45 H 0.176 0.824 46 H 0.147 0.853 47 H 0.031 0.969 48 H 0.057 0.943 49 H 0.361 0.639 50 H 0.260 0.740 51 H 0.105 0.895 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 11.019 27.605 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.126 4.126 4 H 0.133 0.867 5 C -0.196 4.196 6 C 0.298 3.702 7 O -0.470 6.470 8 N -0.356 5.356 9 C 0.020 3.980 10 H 0.072 0.928 11 C -0.165 4.165 12 C -0.075 4.075 13 N -0.176 5.176 14 C 0.048 3.952 15 C -0.198 4.198 16 C -0.074 4.074 17 C -0.207 4.207 18 C -0.009 4.009 19 C 0.078 3.922 20 N -0.394 5.394 21 C -0.362 4.362 22 H 0.085 0.915 23 C -0.246 4.246 24 N -0.627 5.627 25 Si 0.774 3.226 26 H -0.219 1.219 27 H -0.211 1.211 28 H -0.184 1.184 29 N -0.249 5.249 30 C -0.099 4.099 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.256 0.744 40 H 0.125 0.875 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.143 0.857 44 H 0.184 0.816 45 H 0.194 0.806 46 H 0.165 0.835 47 H 0.049 0.951 48 H 0.075 0.925 49 H 0.193 0.807 50 H 0.069 0.931 51 H 0.123 0.877 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.328 10.569 27.296 31.040 hybrid contribution 0.966 -1.367 -0.375 1.716 sum -9.362 9.202 26.921 29.951 Atomic orbital electron populations 1.21807 0.93237 1.02397 1.02996 1.21337 0.97207 0.94456 1.01632 1.21411 0.88708 0.99557 1.02908 0.86687 1.21831 1.03604 1.00520 0.93640 1.21492 0.91554 0.82984 0.74145 1.90707 1.71656 1.33392 1.51246 1.45788 1.06177 1.09402 1.74250 1.21946 0.81305 0.97600 0.97162 0.92809 1.23063 0.95355 1.01686 0.96378 1.23228 0.97446 0.91135 0.95649 1.61012 1.01402 1.42721 1.12426 1.20289 0.91693 0.94785 0.88408 1.21852 0.91287 1.03960 1.02717 1.21879 1.00600 0.93481 0.91452 1.22125 0.97073 1.03084 0.98386 1.21129 0.90107 0.94894 0.94805 1.19608 0.99313 0.84864 0.88446 1.42574 1.86103 1.03703 1.07060 1.19045 1.38399 0.92462 0.86298 0.91543 1.25330 1.02663 0.98430 0.98163 1.69842 1.58167 1.14757 1.19963 0.85546 0.77946 0.79411 0.79653 1.21893 1.21143 1.18378 1.67147 1.36510 1.17956 1.03263 1.23077 0.91549 0.95526 0.99761 0.92503 0.90628 0.92015 0.93971 0.92550 0.90410 0.89239 0.92818 0.74353 0.87511 0.90698 0.93904 0.85732 0.81591 0.80616 0.83486 0.95107 0.92471 0.80667 0.93145 0.87742 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.67 71.98 0.70 -1.11 16 2 C -0.11 -2.00 4.75 30.60 0.15 -1.86 16 3 C -0.10 -1.63 2.73 -11.54 -0.03 -1.66 16 4 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 5 C -0.14 -1.25 8.84 71.98 0.64 -0.62 16 6 C 0.51 12.20 7.15 87.66 0.63 12.83 16 7 O -0.59 -20.63 15.56 -3.04 -0.05 -20.68 16 8 N -0.70 -13.56 5.07 -436.96 -2.21 -15.78 16 9 C 0.13 3.07 3.31 46.17 0.15 3.23 16 10 H 0.05 1.83 7.55 -2.38 -0.02 1.81 16 11 C -0.13 -2.32 6.76 31.98 0.22 -2.10 16 12 C 0.05 0.94 6.08 86.77 0.53 1.47 16 13 N -0.46 -10.45 5.20 -691.71 -3.60 -14.05 16 14 C 0.28 7.73 6.15 133.07 0.82 8.55 16 15 C -0.18 -3.73 9.38 22.50 0.21 -3.52 16 16 C -0.05 -0.99 10.17 22.44 0.23 -0.77 16 17 C -0.19 -5.10 9.71 22.37 0.22 -4.88 16 18 C 0.13 4.48 6.14 42.49 0.26 4.75 16 19 C 0.20 8.48 6.56 85.64 0.56 9.05 16 20 N -0.75 -37.90 5.40 -347.19 -1.87 -39.78 16 21 C -0.23 -13.81 10.47 84.03 0.88 -12.93 16 22 H 0.07 4.24 8.06 -2.91 -0.02 4.22 16 23 C -0.05 -3.31 5.50 84.86 0.47 -2.85 16 24 N -0.98 -64.41 13.97 21.65 0.30 -64.10 16 25 Si 0.95 49.11 27.74 68.60 1.90 51.02 16 26 H -0.29 -15.48 7.11 99.48 0.71 -14.77 16 27 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 28 H -0.26 -12.41 6.52 99.48 0.65 -11.76 16 29 N -0.53 -18.53 7.86 -181.34 -1.42 -19.96 16 30 C 0.03 0.71 6.52 86.65 0.56 1.27 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.65 6.56 -2.39 -0.02 0.64 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.04 1.01 7.95 -2.39 -0.02 0.99 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 0.44 7.56 -2.38 -0.02 0.42 16 37 H 0.09 0.52 6.57 -2.39 -0.02 0.50 16 38 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.42 4.97 7.78 -92.71 -0.72 4.25 16 40 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.04 0.95 7.78 -2.38 -0.02 0.93 16 43 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.17 2.34 7.97 -2.91 -0.02 2.32 16 45 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 46 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 47 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 49 H 0.36 18.22 5.52 -92.70 -0.51 17.71 16 50 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 51 H 0.10 2.04 7.72 -2.39 -0.02 2.02 16 52 H 0.08 2.60 5.91 -2.39 -0.01 2.59 16 Total: -1.00 -82.61 414.11 -0.14 -82.75 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.37 Total: 31.73 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 7.18 Total: 8.85 kcal Atomic # 7 Polarization: -144.86 SS G_CDS: -8.81 Total: -153.67 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.90 Total: 51.02 kcal Total: -82.61 -0.14 -82.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128089846.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.233 kcal (2) G-P(sol) polarization free energy of solvation -82.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds