Wall clock time and date at job start Wed Apr 1 2020 03:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00331 * 2 1 4 4 H 1.09003 * 109.47029 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.47117 * 120.00098 * 3 2 1 6 6 C 1.52997 * 109.47251 * 294.45394 * 5 3 2 7 7 C 1.52999 * 109.47416 * 240.00382 * 3 2 1 8 8 C 1.50697 * 109.46977 * 66.13427 * 7 3 2 9 9 O 1.21282 * 120.00343 * 5.78377 * 8 7 3 10 10 N 1.34783 * 120.00322 * 185.78070 * 8 7 3 11 11 C 1.46494 * 120.00168 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.46900 * 180.02562 * 11 10 8 13 13 C 1.35317 * 126.03877 * 260.14315 * 12 11 10 14 14 N 1.34950 * 107.74264 * 180.27614 * 13 12 11 15 15 H 0.97002 * 126.03788 * 179.75243 * 14 13 12 16 16 N 1.40087 * 107.92579 * 359.74677 * 14 13 12 17 17 C 1.30834 * 108.20386 * 0.02562 * 16 14 13 18 18 C 1.50699 * 125.89832 * 179.97438 * 17 16 14 19 19 H 1.08998 * 110.78182 * 178.23981 * 18 17 16 20 20 C 1.55161 * 110.72311 * 54.99815 * 18 17 16 21 21 C 1.55122 * 101.48893 * 205.97075 * 20 18 17 22 22 N 1.47427 * 104.72581 * 37.29660 * 21 20 18 23 23 C 1.36932 * 125.65213 * 155.81556 * 22 21 20 24 24 H 1.08000 * 119.99812 * 179.68999 * 23 22 21 25 25 C 1.38815 * 119.99763 * 359.69215 * 23 22 21 26 26 N 1.31614 * 120.00321 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99669 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47244 * 179.97438 * 27 25 23 29 29 H 1.48491 * 109.47566 * 300.00070 * 27 25 23 30 30 H 1.48502 * 109.47241 * 60.00106 * 27 25 23 31 31 C 1.47023 * 108.69863 * 335.55223 * 22 21 20 32 32 H 1.08004 * 120.00150 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.00000 * 359.97438 * 1 2 3 34 34 H 1.08004 * 120.00000 * 180.02562 * 2 1 3 35 35 H 1.09001 * 109.46578 * 54.45286 * 5 3 2 36 36 H 1.08996 * 109.47189 * 174.44804 * 5 3 2 37 37 H 1.08997 * 109.47033 * 185.46173 * 6 5 3 38 38 H 1.08996 * 109.46954 * 305.46147 * 6 5 3 39 39 H 1.08999 * 109.47113 * 65.45913 * 6 5 3 40 40 H 1.09000 * 109.46837 * 306.13684 * 7 3 2 41 41 H 1.08997 * 109.47344 * 186.13205 * 7 3 2 42 42 H 0.97002 * 119.99345 * 0.02562 * 10 8 7 43 43 H 1.09004 * 109.46995 * 60.00526 * 11 10 8 44 44 H 1.08994 * 109.47458 * 300.00015 * 11 10 8 45 45 H 1.07994 * 126.13198 * 0.03169 * 13 12 11 46 46 H 1.09004 * 111.00107 * 324.21369 * 20 18 17 47 47 H 1.08997 * 110.99925 * 88.02116 * 20 18 17 48 48 H 1.09004 * 110.49887 * 278.45210 * 21 20 18 49 49 H 1.09005 * 110.34657 * 156.05874 * 21 20 18 50 50 H 0.96996 * 120.00382 * 179.97438 * 26 25 23 51 51 H 1.08996 * 109.88411 * 120.70425 * 31 22 21 52 52 H 1.09004 * 109.88334 * 241.86996 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3860 1.2493 6 6 2.0563 1.4443 2.4946 7 6 2.9431 1.3861 -1.2493 8 6 2.0693 1.4582 -2.4749 9 8 0.8659 1.5518 -2.3572 10 7 2.6252 1.4188 -3.7022 11 6 1.7757 1.4883 -4.8937 12 6 2.6368 1.4245 -6.1289 13 6 3.0224 2.4779 -6.8857 14 7 3.7762 2.0022 -7.8990 15 1 4.1867 2.5302 -8.6016 16 7 3.8613 0.6111 -7.7569 17 6 3.1804 0.2664 -6.6941 18 6 3.0071 -1.1367 -6.1724 19 1 2.4188 -1.1382 -5.2549 20 6 4.3854 -1.8109 -5.9419 21 6 4.0240 -3.3120 -6.0912 22 7 3.0184 -3.3499 -7.1686 23 6 2.7435 -4.4285 -7.9662 24 1 1.9812 -4.3566 -8.7278 25 6 3.4447 -5.6143 -7.7958 26 7 4.3741 -5.7019 -6.8679 27 14 3.0693 -7.0859 -8.8834 28 1 3.9493 -8.2199 -8.5030 29 1 1.6486 -7.4810 -8.7087 30 1 3.3120 -6.7265 -10.3037 31 6 2.3551 -2.0398 -7.2406 32 1 -0.5400 -0.9353 0.0004 33 1 -0.5400 0.9353 0.0004 34 1 1.8500 -0.9353 -0.0004 35 1 3.5837 0.5055 1.3002 36 1 3.5612 2.2825 1.2010 37 1 2.6780 1.5995 3.3764 38 1 1.3494 2.2684 2.3989 39 1 1.5098 0.5067 2.5957 40 1 3.5762 0.5006 -1.3059 41 1 3.5685 2.2772 -1.1961 42 1 3.5877 1.3436 -3.7964 43 1 1.2172 2.4243 -4.8876 44 1 1.0795 0.6497 -4.8929 45 1 2.7688 3.5132 -6.7125 46 1 5.1037 -1.5011 -6.7010 47 1 4.7617 -1.5985 -4.9412 48 1 3.6006 -3.6968 -5.1634 49 1 4.9052 -3.8877 -6.3744 50 1 4.8638 -6.5306 -6.7486 51 1 2.4979 -1.6059 -8.2302 52 1 1.2909 -2.1511 -7.0325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130412350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:36 Heat of formation + Delta-G solvation = 68.055595 kcal Electronic energy + Delta-G solvation = -30524.497811 eV Core-core repulsion = 26526.320805 eV Total energy + Delta-G solvation = -3998.177006 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.33838 -39.76812 -37.26340 -36.94979 -34.88488 -33.07728 -31.86957 -31.50604 -31.00392 -29.98793 -29.09445 -27.43929 -26.16875 -24.62392 -24.21454 -22.02009 -21.79145 -20.50887 -20.23594 -20.05236 -19.58362 -18.67831 -18.05015 -16.82706 -16.77581 -15.94411 -15.73380 -15.03716 -14.88177 -14.71989 -14.51587 -14.38049 -14.17300 -13.99357 -13.66201 -13.52020 -13.26817 -12.81549 -12.66900 -12.37754 -12.31695 -12.07771 -11.86207 -11.78545 -11.51198 -11.50040 -11.35124 -11.03251 -10.98354 -10.78547 -10.73683 -10.61192 -10.49708 -10.10328 -10.02840 -9.93748 -9.73026 -9.44462 -9.22623 -9.11720 -8.99537 -8.59315 -8.57083 -6.74911 -5.58103 -2.99118 1.84542 2.41561 2.62171 2.72151 2.88426 3.45456 3.46507 3.49196 3.50669 4.54353 4.58949 4.61180 4.66828 4.71511 4.72048 5.04154 5.07809 5.14124 5.24681 5.28109 5.32728 5.36517 5.43417 5.53229 5.55699 5.58935 5.66777 5.72759 5.75628 5.76256 5.81827 5.93737 5.96169 5.99354 6.04112 6.09679 6.15232 6.44032 6.45556 6.54981 6.63057 6.73459 6.75362 6.79286 6.90740 7.00916 7.26964 7.55124 7.58629 7.69646 7.79716 7.92323 8.28079 8.43743 9.29510 9.90321 10.55696 11.45772 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009452 B = 0.002731 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.709486 B =10250.720825 C =12342.470099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.155 4.155 3 C -0.043 4.043 4 H 0.081 0.919 5 C -0.117 4.117 6 C -0.150 4.150 7 C -0.136 4.136 8 C 0.511 3.489 9 O -0.536 6.536 10 N -0.726 5.726 11 C 0.203 3.797 12 C -0.262 4.262 13 C 0.074 3.926 14 N -0.481 5.481 15 H 0.438 0.562 16 N -0.277 5.277 17 C 0.120 3.880 18 C -0.028 4.028 19 H 0.087 0.913 20 C -0.130 4.130 21 C 0.152 3.848 22 N -0.602 5.602 23 C -0.218 4.218 24 H 0.076 0.924 25 C -0.013 4.013 26 N -0.924 5.924 27 Si 0.914 3.086 28 H -0.290 1.290 29 H -0.286 1.286 30 H -0.286 1.286 31 C 0.149 3.851 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.400 0.600 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.174 0.826 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.012 0.988 49 H 0.108 0.892 50 H 0.252 0.748 51 H 0.029 0.971 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 21.303 12.404 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.062 4.062 4 H 0.100 0.900 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.176 4.176 8 C 0.297 3.703 9 O -0.413 6.413 10 N -0.378 5.378 11 C 0.079 3.921 12 C -0.274 4.274 13 C -0.076 4.076 14 N -0.187 5.187 15 H 0.282 0.718 16 N -0.099 5.099 17 C -0.048 4.048 18 C -0.049 4.049 19 H 0.106 0.894 20 C -0.170 4.170 21 C 0.028 3.972 22 N -0.328 5.328 23 C -0.347 4.347 24 H 0.094 0.906 25 C -0.208 4.208 26 N -0.573 5.573 27 Si 0.745 3.255 28 H -0.216 1.216 29 H -0.213 1.213 30 H -0.212 1.212 31 C 0.022 3.978 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.234 0.766 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.191 0.809 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.030 0.970 49 H 0.125 0.875 50 H 0.062 0.938 51 H 0.047 0.953 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.561 20.746 11.462 23.709 hybrid contribution -0.050 -0.130 -0.496 0.516 sum -0.611 20.617 10.966 23.360 Atomic orbital electron populations 1.23726 0.95966 1.01345 0.99225 1.22696 0.96053 0.97229 1.01312 1.20155 0.96524 0.97102 0.92430 0.90039 1.21549 0.97877 1.01959 0.94047 1.21751 0.99765 1.02135 0.97131 1.21730 0.98754 1.04332 0.92806 1.20644 0.89123 0.75982 0.84526 1.90699 1.14989 1.48925 1.86701 1.46224 1.10938 1.75240 1.05443 1.19339 0.90858 1.02178 0.79688 1.19973 1.11915 0.92290 1.03230 1.22351 0.95428 0.99434 0.90357 1.46377 1.41945 1.06665 1.23713 0.71833 1.77539 1.23859 0.88623 1.19878 1.22267 0.94220 0.96155 0.92139 1.20743 0.99366 0.86200 0.98566 0.89440 1.23106 0.94393 0.99512 0.99956 1.21989 0.95471 0.89765 0.90009 1.44462 1.41645 1.08073 1.38662 1.19032 1.16035 0.89002 1.10589 0.90625 1.24761 0.98944 0.97918 0.99148 1.69771 1.26664 1.25872 1.34961 0.86152 0.77399 0.82117 0.79843 1.21609 1.21264 1.21246 1.21268 0.94632 0.86643 0.95278 0.89109 0.88690 0.87852 0.91699 0.91941 0.92996 0.92850 0.92411 0.88792 0.88905 0.76601 0.91318 0.90665 0.80916 0.91548 0.92556 0.97018 0.87461 0.93767 0.95334 0.96116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 13.42 29.02 0.39 -1.47 16 2 C -0.15 -1.63 7.00 -36.03 -0.25 -1.88 16 3 C -0.04 -0.39 1.80 -91.77 -0.17 -0.55 16 4 H 0.08 0.83 7.47 -51.93 -0.39 0.44 16 5 C -0.12 -0.83 5.39 -26.73 -0.14 -0.98 16 6 C -0.15 -1.07 9.64 37.16 0.36 -0.71 16 7 C -0.14 -1.13 5.15 -27.88 -0.14 -1.27 16 8 C 0.51 5.79 7.52 -10.98 -0.08 5.71 16 9 O -0.54 -7.89 14.47 5.56 0.08 -7.81 16 10 N -0.73 -7.53 5.55 -61.47 -0.34 -7.88 16 11 C 0.20 2.34 5.65 -5.19 -0.03 2.31 16 12 C -0.26 -3.18 5.47 -105.05 -0.57 -3.75 16 13 C 0.07 0.71 11.90 -17.22 -0.20 0.50 16 14 N -0.48 -5.29 7.36 30.44 0.22 -5.06 16 15 H 0.44 3.30 8.96 -182.61 -1.64 1.66 16 16 N -0.28 -4.46 12.33 33.67 0.42 -4.05 16 17 C 0.12 1.89 5.76 -82.41 -0.47 1.41 16 18 C -0.03 -0.51 3.36 -89.93 -0.30 -0.81 16 19 H 0.09 1.52 7.31 -51.93 -0.38 1.14 16 20 C -0.13 -2.54 6.53 -24.46 -0.16 -2.70 16 21 C 0.15 3.78 5.91 -2.41 -0.01 3.77 16 22 N -0.60 -16.01 3.39 -169.93 -0.58 -16.58 16 23 C -0.22 -6.28 10.27 -15.06 -0.15 -6.43 16 24 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 25 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 26 N -0.92 -27.36 10.08 55.49 0.56 -26.80 16 27 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 31 C 0.15 3.31 6.83 -3.06 -0.02 3.29 16 32 H 0.09 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.09 1.09 7.83 -52.48 -0.41 0.68 16 34 H 0.10 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.45 7.58 -51.93 -0.39 0.05 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.40 3.59 8.46 -40.82 -0.35 3.24 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.02 7.76 -51.93 -0.40 0.62 16 45 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 46 H 0.07 1.36 7.88 -51.93 -0.41 0.95 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.11 2.99 5.85 -51.93 -0.30 2.68 16 50 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 51 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 52 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 419.66 15.07 6.32 6.32 Total: -1.00 -34.64 419.66 -10.52 -45.16 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -10.11 Total: 3.17 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.07 Total: -4.03 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.28 Total: -60.37 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.08 Total: -7.81 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.64 -10.52 -45.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130412350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.213 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds