Wall clock time and date at job start Wed Apr 1 2020 03:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00331 * 2 1 4 4 H 1.09003 * 109.47029 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.47117 * 120.00098 * 3 2 1 6 6 C 1.52997 * 109.47251 * 294.45394 * 5 3 2 7 7 C 1.52999 * 109.47416 * 240.00382 * 3 2 1 8 8 C 1.50697 * 109.46977 * 66.13427 * 7 3 2 9 9 O 1.21282 * 120.00343 * 5.78377 * 8 7 3 10 10 N 1.34783 * 120.00322 * 185.78070 * 8 7 3 11 11 C 1.46494 * 120.00168 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.46900 * 180.02562 * 11 10 8 13 13 C 1.35317 * 126.03877 * 260.14315 * 12 11 10 14 14 N 1.34950 * 107.74264 * 180.27614 * 13 12 11 15 15 H 0.97002 * 126.03788 * 179.75243 * 14 13 12 16 16 N 1.40087 * 107.92579 * 359.74677 * 14 13 12 17 17 C 1.30834 * 108.20386 * 0.02562 * 16 14 13 18 18 C 1.50699 * 125.89832 * 179.97438 * 17 16 14 19 19 H 1.08998 * 110.78182 * 178.23981 * 18 17 16 20 20 C 1.55161 * 110.72311 * 54.99815 * 18 17 16 21 21 C 1.55122 * 101.48893 * 205.97075 * 20 18 17 22 22 N 1.47427 * 104.72581 * 37.29660 * 21 20 18 23 23 C 1.36932 * 125.65213 * 155.81556 * 22 21 20 24 24 H 1.08000 * 119.99812 * 179.68999 * 23 22 21 25 25 C 1.38815 * 119.99763 * 359.69215 * 23 22 21 26 26 N 1.31614 * 120.00321 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99669 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47244 * 179.97438 * 27 25 23 29 29 H 1.48491 * 109.47566 * 300.00070 * 27 25 23 30 30 H 1.48502 * 109.47241 * 60.00106 * 27 25 23 31 31 C 1.47023 * 108.69863 * 335.55223 * 22 21 20 32 32 H 1.08004 * 120.00150 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.00000 * 359.97438 * 1 2 3 34 34 H 1.08004 * 120.00000 * 180.02562 * 2 1 3 35 35 H 1.09001 * 109.46578 * 54.45286 * 5 3 2 36 36 H 1.08996 * 109.47189 * 174.44804 * 5 3 2 37 37 H 1.08997 * 109.47033 * 185.46173 * 6 5 3 38 38 H 1.08996 * 109.46954 * 305.46147 * 6 5 3 39 39 H 1.08999 * 109.47113 * 65.45913 * 6 5 3 40 40 H 1.09000 * 109.46837 * 306.13684 * 7 3 2 41 41 H 1.08997 * 109.47344 * 186.13205 * 7 3 2 42 42 H 0.97002 * 119.99345 * 0.02562 * 10 8 7 43 43 H 1.09004 * 109.46995 * 60.00526 * 11 10 8 44 44 H 1.08994 * 109.47458 * 300.00015 * 11 10 8 45 45 H 1.07994 * 126.13198 * 0.03169 * 13 12 11 46 46 H 1.09004 * 111.00107 * 324.21369 * 20 18 17 47 47 H 1.08997 * 110.99925 * 88.02116 * 20 18 17 48 48 H 1.09004 * 110.49887 * 278.45210 * 21 20 18 49 49 H 1.09005 * 110.34657 * 156.05874 * 21 20 18 50 50 H 0.96996 * 120.00382 * 179.97438 * 26 25 23 51 51 H 1.08996 * 109.88411 * 120.70425 * 31 22 21 52 52 H 1.09004 * 109.88334 * 241.86996 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3860 1.2493 6 6 2.0563 1.4443 2.4946 7 6 2.9431 1.3861 -1.2493 8 6 2.0693 1.4582 -2.4749 9 8 0.8659 1.5518 -2.3572 10 7 2.6252 1.4188 -3.7022 11 6 1.7757 1.4883 -4.8937 12 6 2.6368 1.4245 -6.1289 13 6 3.0224 2.4779 -6.8857 14 7 3.7762 2.0022 -7.8990 15 1 4.1867 2.5302 -8.6016 16 7 3.8613 0.6111 -7.7569 17 6 3.1804 0.2664 -6.6941 18 6 3.0071 -1.1367 -6.1724 19 1 2.4188 -1.1382 -5.2549 20 6 4.3854 -1.8109 -5.9419 21 6 4.0240 -3.3120 -6.0912 22 7 3.0184 -3.3499 -7.1686 23 6 2.7435 -4.4285 -7.9662 24 1 1.9812 -4.3566 -8.7278 25 6 3.4447 -5.6143 -7.7958 26 7 4.3741 -5.7019 -6.8679 27 14 3.0693 -7.0859 -8.8834 28 1 3.9493 -8.2199 -8.5030 29 1 1.6486 -7.4810 -8.7087 30 1 3.3120 -6.7265 -10.3037 31 6 2.3551 -2.0398 -7.2406 32 1 -0.5400 -0.9353 0.0004 33 1 -0.5400 0.9353 0.0004 34 1 1.8500 -0.9353 -0.0004 35 1 3.5837 0.5055 1.3002 36 1 3.5612 2.2825 1.2010 37 1 2.6780 1.5995 3.3764 38 1 1.3494 2.2684 2.3989 39 1 1.5098 0.5067 2.5957 40 1 3.5762 0.5006 -1.3059 41 1 3.5685 2.2772 -1.1961 42 1 3.5877 1.3436 -3.7964 43 1 1.2172 2.4243 -4.8876 44 1 1.0795 0.6497 -4.8929 45 1 2.7688 3.5132 -6.7125 46 1 5.1037 -1.5011 -6.7010 47 1 4.7617 -1.5985 -4.9412 48 1 3.6006 -3.6968 -5.1634 49 1 4.9052 -3.8877 -6.3744 50 1 4.8638 -6.5306 -6.7486 51 1 2.4979 -1.6059 -8.2302 52 1 1.2909 -2.1511 -7.0325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130412350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:35 Heat of formation + Delta-G solvation = 45.470963 kcal Electronic energy + Delta-G solvation = -30525.477154 eV Core-core repulsion = 26526.320805 eV Total energy + Delta-G solvation = -3999.156349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.34076 -40.62664 -39.02568 -37.68164 -35.81910 -34.89432 -32.82705 -32.58469 -32.08263 -30.90400 -30.76530 -29.13383 -27.00989 -26.62462 -24.93328 -23.40958 -22.46927 -22.06068 -21.40235 -21.17795 -20.36528 -20.03612 -18.93447 -18.85147 -17.64228 -16.90090 -16.80932 -16.53776 -16.29435 -15.76951 -15.65320 -15.52629 -15.31823 -14.92933 -14.66010 -14.42536 -14.34884 -14.13068 -13.89093 -13.68585 -13.52146 -13.39647 -13.19278 -12.95492 -12.94256 -12.71318 -12.68164 -12.32156 -12.12403 -12.05424 -11.97834 -11.89541 -11.72838 -11.63714 -11.62390 -11.31193 -11.17523 -10.83693 -10.74106 -10.29023 -10.06320 -9.87461 -9.50853 -8.88202 -7.76721 -5.21391 0.97540 1.45082 1.49073 1.54443 1.55688 1.57544 1.87706 2.03535 2.49732 2.64199 3.31563 3.55785 3.77361 3.84704 3.90238 3.93674 4.00201 4.04546 4.16417 4.18815 4.35792 4.43093 4.46137 4.50499 4.57436 4.68089 4.68528 4.69362 4.74028 4.81329 4.87507 4.93708 5.04749 5.06395 5.07733 5.12421 5.13212 5.16538 5.23630 5.32969 5.45020 5.45537 5.51382 5.57653 5.62594 5.66736 5.81129 5.89406 6.07734 6.31724 6.51753 6.75417 6.78875 7.11366 7.46196 7.77884 8.42377 9.24780 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009452 B = 0.002731 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.709486 B =10250.720825 C =12342.470099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.152 4.152 3 C -0.041 4.041 4 H 0.067 0.933 5 C -0.112 4.112 6 C -0.152 4.152 7 C -0.131 4.131 8 C 0.506 3.494 9 O -0.576 6.576 10 N -0.718 5.718 11 C 0.210 3.790 12 C -0.271 4.271 13 C 0.106 3.894 14 N -0.466 5.466 15 H 0.454 0.546 16 N -0.325 5.325 17 C 0.104 3.896 18 C -0.009 4.009 19 H 0.094 0.906 20 C -0.111 4.111 21 C 0.155 3.845 22 N -0.624 5.624 23 C -0.242 4.242 24 H 0.075 0.925 25 C -0.066 4.066 26 N -0.947 5.947 27 Si 0.981 3.019 28 H -0.289 1.289 29 H -0.279 1.279 30 H -0.278 1.278 31 C 0.146 3.854 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.409 0.591 43 H 0.082 0.918 44 H 0.048 0.952 45 H 0.225 0.775 46 H 0.056 0.944 47 H 0.089 0.911 48 H -0.008 1.008 49 H 0.074 0.926 50 H 0.248 0.752 51 H 0.018 0.982 52 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 23.908 12.590 27.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.170 4.170 3 C -0.060 4.060 4 H 0.086 0.914 5 C -0.149 4.149 6 C -0.209 4.209 7 C -0.171 4.171 8 C 0.294 3.706 9 O -0.455 6.455 10 N -0.370 5.370 11 C 0.086 3.914 12 C -0.283 4.283 13 C -0.044 4.044 14 N -0.174 5.174 15 H 0.301 0.699 16 N -0.148 5.148 17 C -0.063 4.063 18 C -0.029 4.029 19 H 0.112 0.888 20 C -0.150 4.150 21 C 0.030 3.970 22 N -0.350 5.350 23 C -0.371 4.371 24 H 0.093 0.907 25 C -0.258 4.258 26 N -0.597 5.597 27 Si 0.809 3.191 28 H -0.215 1.215 29 H -0.205 1.205 30 H -0.204 1.204 31 C 0.020 3.980 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.124 0.876 41 H 0.141 0.859 42 H 0.245 0.755 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.241 0.759 46 H 0.075 0.925 47 H 0.107 0.893 48 H 0.010 0.990 49 H 0.092 0.908 50 H 0.058 0.942 51 H 0.036 0.964 52 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 0.391 23.375 11.631 26.112 hybrid contribution -0.358 -0.872 -0.601 1.118 sum 0.033 22.503 11.030 25.061 Atomic orbital electron populations 1.23722 0.96519 1.00970 1.00892 1.22929 0.95958 0.98301 0.99855 1.20146 0.96589 0.95427 0.93873 0.91446 1.21529 0.97583 1.03055 0.92745 1.21761 0.99895 1.01433 0.97828 1.21772 0.98324 1.06325 0.90632 1.21206 0.88951 0.75037 0.85445 1.90692 1.16803 1.50775 1.87243 1.46165 1.11320 1.74566 1.04957 1.19187 0.90583 1.01694 0.79979 1.19954 1.12615 0.91739 1.03967 1.23015 0.92515 1.00888 0.87987 1.46347 1.41574 1.05109 1.24346 0.69915 1.77434 1.25161 0.91622 1.20576 1.21858 0.95849 0.95487 0.93120 1.20437 0.97724 0.87337 0.97437 0.88756 1.22871 0.95126 0.95517 1.01500 1.21788 0.93651 0.93028 0.88561 1.44773 1.42562 1.09024 1.38683 1.19389 1.16283 0.90269 1.11185 0.90681 1.25626 0.98934 1.00589 1.00656 1.70027 1.27295 1.26152 1.36182 0.85112 0.77322 0.78446 0.78201 1.21521 1.20479 1.20436 1.21363 0.94545 0.85783 0.96308 0.89312 0.89403 0.87693 0.91204 0.90142 0.91861 0.93160 0.93535 0.87580 0.85872 0.75487 0.89980 0.93415 0.75888 0.92494 0.89265 0.99027 0.90806 0.94208 0.96429 0.96486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.28 13.42 67.78 0.91 -3.37 16 2 C -0.15 -3.17 7.00 25.65 0.18 -2.99 16 3 C -0.04 -0.68 1.80 -11.54 -0.02 -0.70 16 4 H 0.07 1.32 7.47 -2.39 -0.02 1.30 16 5 C -0.11 -1.34 5.39 30.60 0.16 -1.17 16 6 C -0.15 -1.97 9.64 71.98 0.69 -1.28 16 7 C -0.13 -1.83 5.15 29.85 0.15 -1.67 16 8 C 0.51 10.59 7.52 87.65 0.66 11.25 16 9 O -0.58 -16.63 14.47 -3.03 -0.04 -16.67 16 10 N -0.72 -13.19 5.55 -466.79 -2.59 -15.78 16 11 C 0.21 4.42 5.65 85.64 0.48 4.90 16 12 C -0.27 -5.84 5.47 -20.14 -0.11 -5.95 16 13 C 0.11 1.56 11.90 83.54 0.99 2.56 16 14 N -0.47 -8.72 7.36 -57.59 -0.42 -9.14 16 15 H 0.45 5.26 8.96 -213.33 -1.91 3.35 16 16 N -0.32 -9.97 12.33 -47.39 -0.58 -10.56 16 17 C 0.10 3.11 5.76 43.10 0.25 3.36 16 18 C -0.01 -0.31 3.36 -10.35 -0.03 -0.34 16 19 H 0.09 3.25 7.31 -2.39 -0.02 3.23 16 20 C -0.11 -4.32 6.53 32.06 0.21 -4.11 16 21 C 0.15 7.93 5.91 86.93 0.51 8.45 16 22 N -0.62 -34.33 3.39 -691.53 -2.35 -36.68 16 23 C -0.24 -14.37 10.27 84.03 0.86 -13.51 16 24 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 25 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 26 N -0.95 -57.81 10.08 21.65 0.22 -57.59 16 27 Si 0.98 47.19 29.55 68.60 2.03 49.21 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 29 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 30 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 31 C 0.15 6.68 6.83 86.73 0.59 7.27 16 32 H 0.09 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.09 2.13 7.83 -2.91 -0.02 2.11 16 34 H 0.11 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.05 0.70 7.58 -2.39 -0.02 0.68 16 40 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 41 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.41 6.05 8.46 -92.71 -0.78 5.27 16 43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.05 1.28 7.76 -2.39 -0.02 1.26 16 45 H 0.22 1.01 8.06 -2.91 -0.02 0.98 16 46 H 0.06 2.33 7.88 -2.38 -0.02 2.31 16 47 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 48 H -0.01 -0.45 8.14 -2.38 -0.02 -0.46 16 49 H 0.07 4.30 5.85 -2.38 -0.01 4.28 16 50 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 51 H 0.02 0.84 7.67 -2.39 -0.02 0.82 16 52 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -79.44 419.66 1.44 -78.00 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -1.78 Total: 19.91 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 6.97 Total: -0.70 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -5.73 Total: -129.75 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.04 Total: -16.67 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Total: -79.44 1.44 -78.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130412350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.472 kcal (2) G-P(sol) polarization free energy of solvation -79.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds