Wall clock time and date at job start Wed Apr 1 2020 03:56:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30997 * 1
3 3 C 1.50696 * 120.00331 * 2 1
4 4 H 1.09003 * 109.47029 * 0.02562 * 3 2 1
5 5 C 1.53005 * 109.47117 * 120.00098 * 3 2 1
6 6 C 1.52997 * 109.47251 * 294.45394 * 5 3 2
7 7 C 1.52999 * 109.47416 * 240.00382 * 3 2 1
8 8 C 1.50697 * 109.46977 * 66.13427 * 7 3 2
9 9 O 1.21282 * 120.00343 * 5.78377 * 8 7 3
10 10 N 1.34783 * 120.00322 * 185.78070 * 8 7 3
11 11 C 1.46494 * 120.00168 * 179.97438 * 10 8 7
12 12 C 1.50707 * 109.46900 * 180.02562 * 11 10 8
13 13 C 1.35317 * 126.03877 * 260.14315 * 12 11 10
14 14 N 1.34950 * 107.74264 * 180.27614 * 13 12 11
15 15 H 0.97002 * 126.03788 * 179.75243 * 14 13 12
16 16 N 1.40087 * 107.92579 * 359.74677 * 14 13 12
17 17 C 1.30834 * 108.20386 * 0.02562 * 16 14 13
18 18 C 1.50699 * 125.89832 * 179.97438 * 17 16 14
19 19 H 1.08998 * 110.78182 * 178.23981 * 18 17 16
20 20 C 1.55161 * 110.72311 * 54.99815 * 18 17 16
21 21 C 1.55122 * 101.48893 * 205.97075 * 20 18 17
22 22 N 1.47427 * 104.72581 * 37.29660 * 21 20 18
23 23 C 1.36932 * 125.65213 * 155.81556 * 22 21 20
24 24 H 1.08000 * 119.99812 * 179.68999 * 23 22 21
25 25 C 1.38815 * 119.99763 * 359.69215 * 23 22 21
26 26 N 1.31614 * 120.00321 * 359.97438 * 25 23 22
27 27 Si 1.86797 * 119.99669 * 179.97438 * 25 23 22
28 28 H 1.48498 * 109.47244 * 179.97438 * 27 25 23
29 29 H 1.48491 * 109.47566 * 300.00070 * 27 25 23
30 30 H 1.48502 * 109.47241 * 60.00106 * 27 25 23
31 31 C 1.47023 * 108.69863 * 335.55223 * 22 21 20
32 32 H 1.08004 * 120.00150 * 180.02562 * 1 2 3
33 33 H 1.08004 * 120.00000 * 359.97438 * 1 2 3
34 34 H 1.08004 * 120.00000 * 180.02562 * 2 1 3
35 35 H 1.09001 * 109.46578 * 54.45286 * 5 3 2
36 36 H 1.08996 * 109.47189 * 174.44804 * 5 3 2
37 37 H 1.08997 * 109.47033 * 185.46173 * 6 5 3
38 38 H 1.08996 * 109.46954 * 305.46147 * 6 5 3
39 39 H 1.08999 * 109.47113 * 65.45913 * 6 5 3
40 40 H 1.09000 * 109.46837 * 306.13684 * 7 3 2
41 41 H 1.08997 * 109.47344 * 186.13205 * 7 3 2
42 42 H 0.97002 * 119.99345 * 0.02562 * 10 8 7
43 43 H 1.09004 * 109.46995 * 60.00526 * 11 10 8
44 44 H 1.08994 * 109.47458 * 300.00015 * 11 10 8
45 45 H 1.07994 * 126.13198 * 0.03169 * 13 12 11
46 46 H 1.09004 * 111.00107 * 324.21369 * 20 18 17
47 47 H 1.08997 * 110.99925 * 88.02116 * 20 18 17
48 48 H 1.09004 * 110.49887 * 278.45210 * 21 20 18
49 49 H 1.09005 * 110.34657 * 156.05874 * 21 20 18
50 50 H 0.96996 * 120.00382 * 179.97438 * 26 25 23
51 51 H 1.08996 * 109.88411 * 120.70425 * 31 22 21
52 52 H 1.09004 * 109.88334 * 241.86996 * 31 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3050 0.0000
4 1 1.3552 2.1336 0.0005
5 6 2.9432 1.3860 1.2493
6 6 2.0563 1.4443 2.4946
7 6 2.9431 1.3861 -1.2493
8 6 2.0693 1.4582 -2.4749
9 8 0.8659 1.5518 -2.3572
10 7 2.6252 1.4188 -3.7022
11 6 1.7757 1.4883 -4.8937
12 6 2.6368 1.4245 -6.1289
13 6 3.0224 2.4779 -6.8857
14 7 3.7762 2.0022 -7.8990
15 1 4.1867 2.5302 -8.6016
16 7 3.8613 0.6111 -7.7569
17 6 3.1804 0.2664 -6.6941
18 6 3.0071 -1.1367 -6.1724
19 1 2.4188 -1.1382 -5.2549
20 6 4.3854 -1.8109 -5.9419
21 6 4.0240 -3.3120 -6.0912
22 7 3.0184 -3.3499 -7.1686
23 6 2.7435 -4.4285 -7.9662
24 1 1.9812 -4.3566 -8.7278
25 6 3.4447 -5.6143 -7.7958
26 7 4.3741 -5.7019 -6.8679
27 14 3.0693 -7.0859 -8.8834
28 1 3.9493 -8.2199 -8.5030
29 1 1.6486 -7.4810 -8.7087
30 1 3.3120 -6.7265 -10.3037
31 6 2.3551 -2.0398 -7.2406
32 1 -0.5400 -0.9353 0.0004
33 1 -0.5400 0.9353 0.0004
34 1 1.8500 -0.9353 -0.0004
35 1 3.5837 0.5055 1.3002
36 1 3.5612 2.2825 1.2010
37 1 2.6780 1.5995 3.3764
38 1 1.3494 2.2684 2.3989
39 1 1.5098 0.5067 2.5957
40 1 3.5762 0.5006 -1.3059
41 1 3.5685 2.2772 -1.1961
42 1 3.5877 1.3436 -3.7964
43 1 1.2172 2.4243 -4.8876
44 1 1.0795 0.6497 -4.8929
45 1 2.7688 3.5132 -6.7125
46 1 5.1037 -1.5011 -6.7010
47 1 4.7617 -1.5985 -4.9412
48 1 3.6006 -3.6968 -5.1634
49 1 4.9052 -3.8877 -6.3744
50 1 4.8638 -6.5306 -6.7486
51 1 2.4979 -1.6059 -8.2302
52 1 1.2909 -2.1511 -7.0325
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001130412350.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:56:35
Heat of formation + Delta-G solvation = 45.470963 kcal
Electronic energy + Delta-G solvation = -30525.477154 eV
Core-core repulsion = 26526.320805 eV
Total energy + Delta-G solvation = -3999.156349 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.34076 -40.62664 -39.02568 -37.68164 -35.81910 -34.89432 -32.82705 -32.58469
-32.08263 -30.90400 -30.76530 -29.13383 -27.00989 -26.62462 -24.93328 -23.40958
-22.46927 -22.06068 -21.40235 -21.17795 -20.36528 -20.03612 -18.93447 -18.85147
-17.64228 -16.90090 -16.80932 -16.53776 -16.29435 -15.76951 -15.65320 -15.52629
-15.31823 -14.92933 -14.66010 -14.42536 -14.34884 -14.13068 -13.89093 -13.68585
-13.52146 -13.39647 -13.19278 -12.95492 -12.94256 -12.71318 -12.68164 -12.32156
-12.12403 -12.05424 -11.97834 -11.89541 -11.72838 -11.63714 -11.62390 -11.31193
-11.17523 -10.83693 -10.74106 -10.29023 -10.06320 -9.87461 -9.50853 -8.88202
-7.76721 -5.21391 0.97540 1.45082 1.49073 1.54443 1.55688 1.57544
1.87706 2.03535 2.49732 2.64199 3.31563 3.55785 3.77361 3.84704
3.90238 3.93674 4.00201 4.04546 4.16417 4.18815 4.35792 4.43093
4.46137 4.50499 4.57436 4.68089 4.68528 4.69362 4.74028 4.81329
4.87507 4.93708 5.04749 5.06395 5.07733 5.12421 5.13212 5.16538
5.23630 5.32969 5.45020 5.45537 5.51382 5.57653 5.62594 5.66736
5.81129 5.89406 6.07734 6.31724 6.51753 6.75417 6.78875 7.11366
7.46196 7.77884 8.42377 9.24780
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.009452 B = 0.002731 C = 0.002268
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2961.709486 B =10250.720825 C =12342.470099
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.152 4.152
3 C -0.041 4.041
4 H 0.067 0.933
5 C -0.112 4.112
6 C -0.152 4.152
7 C -0.131 4.131
8 C 0.506 3.494
9 O -0.576 6.576
10 N -0.718 5.718
11 C 0.210 3.790
12 C -0.271 4.271
13 C 0.106 3.894
14 N -0.466 5.466
15 H 0.454 0.546
16 N -0.325 5.325
17 C 0.104 3.896
18 C -0.009 4.009
19 H 0.094 0.906
20 C -0.111 4.111
21 C 0.155 3.845
22 N -0.624 5.624
23 C -0.242 4.242
24 H 0.075 0.925
25 C -0.066 4.066
26 N -0.947 5.947
27 Si 0.981 3.019
28 H -0.289 1.289
29 H -0.279 1.279
30 H -0.278 1.278
31 C 0.146 3.854
32 H 0.088 0.912
33 H 0.088 0.912
34 H 0.105 0.895
35 H 0.069 0.931
36 H 0.080 0.920
37 H 0.062 0.938
38 H 0.049 0.951
39 H 0.045 0.955
40 H 0.106 0.894
41 H 0.123 0.877
42 H 0.409 0.591
43 H 0.082 0.918
44 H 0.048 0.952
45 H 0.225 0.775
46 H 0.056 0.944
47 H 0.089 0.911
48 H -0.008 1.008
49 H 0.074 0.926
50 H 0.248 0.752
51 H 0.018 0.982
52 H 0.017 0.983
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.474 23.908 12.590 27.024
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.170 4.170
3 C -0.060 4.060
4 H 0.086 0.914
5 C -0.149 4.149
6 C -0.209 4.209
7 C -0.171 4.171
8 C 0.294 3.706
9 O -0.455 6.455
10 N -0.370 5.370
11 C 0.086 3.914
12 C -0.283 4.283
13 C -0.044 4.044
14 N -0.174 5.174
15 H 0.301 0.699
16 N -0.148 5.148
17 C -0.063 4.063
18 C -0.029 4.029
19 H 0.112 0.888
20 C -0.150 4.150
21 C 0.030 3.970
22 N -0.350 5.350
23 C -0.371 4.371
24 H 0.093 0.907
25 C -0.258 4.258
26 N -0.597 5.597
27 Si 0.809 3.191
28 H -0.215 1.215
29 H -0.205 1.205
30 H -0.204 1.204
31 C 0.020 3.980
32 H 0.107 0.893
33 H 0.106 0.894
34 H 0.123 0.877
35 H 0.088 0.912
36 H 0.099 0.901
37 H 0.081 0.919
38 H 0.068 0.932
39 H 0.065 0.935
40 H 0.124 0.876
41 H 0.141 0.859
42 H 0.245 0.755
43 H 0.100 0.900
44 H 0.066 0.934
45 H 0.241 0.759
46 H 0.075 0.925
47 H 0.107 0.893
48 H 0.010 0.990
49 H 0.092 0.908
50 H 0.058 0.942
51 H 0.036 0.964
52 H 0.035 0.965
Dipole moment (debyes) X Y Z Total
from point charges 0.391 23.375 11.631 26.112
hybrid contribution -0.358 -0.872 -0.601 1.118
sum 0.033 22.503 11.030 25.061
Atomic orbital electron populations
1.23722 0.96519 1.00970 1.00892 1.22929 0.95958 0.98301 0.99855
1.20146 0.96589 0.95427 0.93873 0.91446 1.21529 0.97583 1.03055
0.92745 1.21761 0.99895 1.01433 0.97828 1.21772 0.98324 1.06325
0.90632 1.21206 0.88951 0.75037 0.85445 1.90692 1.16803 1.50775
1.87243 1.46165 1.11320 1.74566 1.04957 1.19187 0.90583 1.01694
0.79979 1.19954 1.12615 0.91739 1.03967 1.23015 0.92515 1.00888
0.87987 1.46347 1.41574 1.05109 1.24346 0.69915 1.77434 1.25161
0.91622 1.20576 1.21858 0.95849 0.95487 0.93120 1.20437 0.97724
0.87337 0.97437 0.88756 1.22871 0.95126 0.95517 1.01500 1.21788
0.93651 0.93028 0.88561 1.44773 1.42562 1.09024 1.38683 1.19389
1.16283 0.90269 1.11185 0.90681 1.25626 0.98934 1.00589 1.00656
1.70027 1.27295 1.26152 1.36182 0.85112 0.77322 0.78446 0.78201
1.21521 1.20479 1.20436 1.21363 0.94545 0.85783 0.96308 0.89312
0.89403 0.87693 0.91204 0.90142 0.91861 0.93160 0.93535 0.87580
0.85872 0.75487 0.89980 0.93415 0.75888 0.92494 0.89265 0.99027
0.90806 0.94208 0.96429 0.96486
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.28 13.42 67.78 0.91 -3.37 16
2 C -0.15 -3.17 7.00 25.65 0.18 -2.99 16
3 C -0.04 -0.68 1.80 -11.54 -0.02 -0.70 16
4 H 0.07 1.32 7.47 -2.39 -0.02 1.30 16
5 C -0.11 -1.34 5.39 30.60 0.16 -1.17 16
6 C -0.15 -1.97 9.64 71.98 0.69 -1.28 16
7 C -0.13 -1.83 5.15 29.85 0.15 -1.67 16
8 C 0.51 10.59 7.52 87.65 0.66 11.25 16
9 O -0.58 -16.63 14.47 -3.03 -0.04 -16.67 16
10 N -0.72 -13.19 5.55 -466.79 -2.59 -15.78 16
11 C 0.21 4.42 5.65 85.64 0.48 4.90 16
12 C -0.27 -5.84 5.47 -20.14 -0.11 -5.95 16
13 C 0.11 1.56 11.90 83.54 0.99 2.56 16
14 N -0.47 -8.72 7.36 -57.59 -0.42 -9.14 16
15 H 0.45 5.26 8.96 -213.33 -1.91 3.35 16
16 N -0.32 -9.97 12.33 -47.39 -0.58 -10.56 16
17 C 0.10 3.11 5.76 43.10 0.25 3.36 16
18 C -0.01 -0.31 3.36 -10.35 -0.03 -0.34 16
19 H 0.09 3.25 7.31 -2.39 -0.02 3.23 16
20 C -0.11 -4.32 6.53 32.06 0.21 -4.11 16
21 C 0.15 7.93 5.91 86.93 0.51 8.45 16
22 N -0.62 -34.33 3.39 -691.53 -2.35 -36.68 16
23 C -0.24 -14.37 10.27 84.03 0.86 -13.51 16
24 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16
25 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16
26 N -0.95 -57.81 10.08 21.65 0.22 -57.59 16
27 Si 0.98 47.19 29.55 68.60 2.03 49.21 16
28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16
29 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16
30 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16
31 C 0.15 6.68 6.83 86.73 0.59 7.27 16
32 H 0.09 2.01 8.06 -2.91 -0.02 1.99 16
33 H 0.09 2.13 7.83 -2.91 -0.02 2.11 16
34 H 0.11 2.12 8.06 -2.91 -0.02 2.10 16
35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16
37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
39 H 0.05 0.70 7.58 -2.39 -0.02 0.68 16
40 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16
41 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16
42 H 0.41 6.05 8.46 -92.71 -0.78 5.27 16
43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
44 H 0.05 1.28 7.76 -2.39 -0.02 1.26 16
45 H 0.22 1.01 8.06 -2.91 -0.02 0.98 16
46 H 0.06 2.33 7.88 -2.38 -0.02 2.31 16
47 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16
48 H -0.01 -0.45 8.14 -2.38 -0.02 -0.46 16
49 H 0.07 4.30 5.85 -2.38 -0.01 4.28 16
50 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16
51 H 0.02 0.84 7.67 -2.39 -0.02 0.82 16
52 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16
Total: -1.00 -79.44 419.66 1.44 -78.00
By element:
Atomic # 1 Polarization: 21.69 SS G_CDS: -1.78 Total: 19.91 kcal
Atomic # 6 Polarization: -7.67 SS G_CDS: 6.97 Total: -0.70 kcal
Atomic # 7 Polarization: -124.02 SS G_CDS: -5.73 Total: -129.75 kcal
Atomic # 8 Polarization: -16.63 SS G_CDS: -0.04 Total: -16.67 kcal
Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal
Total: -79.44 1.44 -78.00 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001130412350.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.472 kcal
(2) G-P(sol) polarization free energy of solvation -79.444 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.028 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.001 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.471 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds