Wall clock time and date at job start Wed Apr 1 2020 03:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99925 * 2 1 4 4 H 1.08992 * 109.47337 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47219 * 120.00124 * 3 2 1 6 6 C 1.53004 * 109.47064 * 294.99730 * 5 3 2 7 7 C 1.53006 * 109.47131 * 239.99807 * 3 2 1 8 8 C 1.50699 * 109.46866 * 65.00047 * 7 3 2 9 9 O 1.21282 * 120.00040 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00033 * 180.02562 * 8 7 3 11 11 C 1.48141 * 127.83880 * 179.97438 * 10 8 7 12 12 C 1.54383 * 104.61817 * 219.58333 * 11 10 8 13 13 H 1.09005 * 110.34221 * 95.00979 * 12 11 10 14 14 C 1.50701 * 110.34202 * 217.15842 * 12 11 10 15 15 C 1.34671 * 125.99159 * 33.26188 * 14 12 11 16 16 N 1.36887 * 106.81490 * 179.84891 * 15 14 12 17 17 C 1.46505 * 126.39335 * 180.12301 * 16 15 14 18 18 C 1.35046 * 107.20836 * 0.41161 * 16 15 14 19 19 N 1.30495 * 108.69737 * 359.74364 * 18 16 15 20 20 C 1.54277 * 104.96187 * 336.13232 * 12 11 10 21 21 H 1.08998 * 110.35037 * 241.12921 * 20 12 11 22 22 N 1.46506 * 110.34270 * 118.97546 * 20 12 11 23 23 C 1.36931 * 120.00356 * 155.00385 * 22 20 12 24 24 H 1.08005 * 119.99724 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00355 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99699 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00221 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47415 * 59.99378 * 27 25 23 29 29 H 1.48495 * 109.47238 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.46688 * 299.99375 * 27 25 23 31 31 C 1.48137 * 127.83630 * 359.67829 * 10 8 7 32 32 H 1.07997 * 119.99929 * 180.02562 * 1 2 3 33 33 H 1.08002 * 120.00069 * 359.97438 * 1 2 3 34 34 H 1.08004 * 120.00173 * 179.97438 * 2 1 3 35 35 H 1.09003 * 109.46920 * 54.99870 * 5 3 2 36 36 H 1.08995 * 109.47278 * 174.99803 * 5 3 2 37 37 H 1.08992 * 109.46962 * 300.00150 * 6 5 3 38 38 H 1.09003 * 109.46815 * 60.00164 * 6 5 3 39 39 H 1.08994 * 109.46990 * 179.97438 * 6 5 3 40 40 H 1.08993 * 109.46955 * 185.00266 * 7 3 2 41 41 H 1.09000 * 109.47050 * 305.00095 * 7 3 2 42 42 H 1.09003 * 110.40744 * 338.37196 * 11 10 8 43 43 H 1.09008 * 110.40598 * 100.67888 * 11 10 8 44 44 H 1.07992 * 126.58960 * 359.96758 * 15 14 12 45 45 H 1.08997 * 109.46869 * 270.31854 * 17 16 15 46 46 H 1.08994 * 109.47060 * 30.31779 * 17 16 15 47 47 H 1.08998 * 109.46546 * 150.31980 * 17 16 15 48 48 H 1.07997 * 125.65134 * 179.71841 * 18 16 15 49 49 H 0.97005 * 119.99828 * 335.00014 * 22 20 12 50 50 H 0.97008 * 119.99695 * 180.02562 * 26 25 23 51 51 H 1.09002 * 110.40924 * 259.20191 * 31 10 8 52 52 H 1.09000 * 110.41133 * 21.62950 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0564 1.4308 2.4953 7 6 2.9431 1.3862 -1.2493 8 6 2.0698 1.4300 -2.4766 9 8 0.8627 1.3990 -2.3633 10 7 2.6301 1.5027 -3.7002 11 6 1.9442 1.5541 -5.0122 12 6 2.8036 0.6647 -5.9363 13 1 2.4001 -0.3474 -5.9705 14 6 2.8612 1.2517 -7.3230 15 6 2.8500 2.5633 -7.6283 16 7 2.9200 2.6530 -8.9924 17 6 2.9384 3.8866 -9.7826 18 6 2.9623 1.3921 -9.4741 19 7 2.9268 0.5594 -8.4700 20 6 4.2064 0.6615 -5.2941 21 1 4.9387 1.0856 -5.9811 22 7 4.5914 -0.7011 -4.9182 23 6 5.9155 -1.0359 -4.8193 24 1 6.6760 -0.2952 -5.0181 25 6 6.2803 -2.3271 -4.4637 26 7 5.3534 -3.2296 -4.2211 27 14 8.0866 -2.7836 -4.3281 28 1 8.7368 -1.9312 -3.3006 29 1 8.2084 -4.2107 -3.9361 30 1 8.7504 -2.5717 -5.6395 31 6 4.0715 1.5553 -4.0379 32 1 -0.5400 -0.9353 0.0004 33 1 -0.5400 0.9353 0.0004 34 1 1.8500 -0.9353 0.0004 35 1 3.5906 0.5105 1.2951 36 1 3.5540 2.2878 1.2056 37 1 1.4090 2.3064 2.4494 38 1 1.4455 0.5291 2.5390 39 1 2.6831 1.4881 3.3853 40 1 3.5540 2.2878 -1.2056 41 1 3.5906 0.5105 -1.2951 42 1 0.9344 1.1520 -4.9292 43 1 1.9153 2.5776 -5.3862 44 1 2.7979 3.3862 -6.9308 45 1 1.9167 4.1764 -10.0277 46 1 3.4128 4.6805 -9.2058 47 1 3.4995 3.7205 -10.7022 48 1 3.0162 1.1183 -10.5174 49 1 3.9083 -1.3662 -4.7393 50 1 5.6084 -4.1319 -3.9722 51 1 4.3721 2.5787 -4.2628 52 1 4.6687 1.1542 -3.2190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130656759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:05 Heat of formation + Delta-G solvation = 61.690523 kcal Electronic energy + Delta-G solvation = -31141.297797 eV Core-core repulsion = 27142.844780 eV Total energy + Delta-G solvation = -3998.453016 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96329 -39.67219 -37.77826 -36.22785 -34.06703 -33.82045 -31.85881 -31.56425 -30.65945 -30.00955 -28.24433 -27.33331 -26.72225 -24.94121 -23.75163 -22.77948 -21.49884 -21.06907 -20.68291 -19.47529 -19.27336 -18.65128 -17.38547 -16.73142 -16.55221 -15.67152 -15.50766 -15.33542 -14.95510 -14.59087 -14.38047 -14.09015 -13.99958 -13.88862 -13.70268 -13.22629 -13.18661 -13.04477 -12.96413 -12.79400 -12.65269 -12.19191 -11.95021 -11.78664 -11.64301 -11.41632 -11.21088 -11.07014 -11.00920 -10.79590 -10.69150 -10.64009 -10.53381 -10.31291 -10.10398 -9.74758 -9.61242 -9.49316 -9.38943 -9.00945 -8.83179 -8.27382 -8.15566 -6.92531 -5.74626 -3.04242 2.15375 2.71628 2.83471 3.09556 3.33382 3.40392 3.44412 3.49288 3.50416 4.53309 4.57470 4.71321 4.79049 4.89434 4.90540 4.91665 5.02164 5.13300 5.15352 5.25453 5.33349 5.36625 5.44990 5.55183 5.62889 5.65701 5.67017 5.72079 5.78564 5.82919 5.87081 5.91192 5.96660 5.99027 6.04640 6.10944 6.18114 6.29200 6.29907 6.31186 6.43451 6.46976 6.54261 6.60218 6.91963 6.98979 7.01857 7.20534 7.29022 7.70051 8.03444 8.31855 8.42490 8.62422 9.54037 10.10387 10.45309 11.47236 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006785 B = 0.004002 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4125.990354 B = 6995.323895 C =10190.883489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.144 4.144 3 C -0.042 4.042 4 H 0.077 0.923 5 C -0.117 4.117 6 C -0.149 4.149 7 C -0.130 4.130 8 C 0.537 3.463 9 O -0.548 6.548 10 N -0.615 5.615 11 C 0.118 3.882 12 C -0.030 4.030 13 H 0.096 0.904 14 C 0.036 3.964 15 C -0.064 4.064 16 N -0.468 5.468 17 C 0.076 3.924 18 C 0.176 3.824 19 N -0.477 5.477 20 C 0.183 3.817 21 H 0.065 0.935 22 N -0.710 5.710 23 C -0.244 4.244 24 H 0.070 0.930 25 C -0.008 4.008 26 N -0.928 5.928 27 Si 0.905 3.095 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 C 0.071 3.929 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.171 0.829 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.202 0.798 49 H 0.386 0.614 50 H 0.256 0.744 51 H 0.057 0.943 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.139 16.947 -1.188 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.060 4.060 4 H 0.095 0.905 5 C -0.155 4.155 6 C -0.207 4.207 7 C -0.170 4.170 8 C 0.326 3.674 9 O -0.426 6.426 10 N -0.349 5.349 11 C -0.006 4.006 12 C -0.051 4.051 13 H 0.115 0.885 14 C -0.094 4.094 15 C -0.195 4.195 16 N -0.153 5.153 17 C -0.067 4.067 18 C -0.106 4.106 19 N -0.194 5.194 20 C 0.070 3.930 21 H 0.083 0.917 22 N -0.349 5.349 23 C -0.375 4.375 24 H 0.088 0.912 25 C -0.204 4.204 26 N -0.575 5.575 27 Si 0.736 3.264 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 C -0.055 4.055 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.189 0.811 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.103 0.897 48 H 0.218 0.782 49 H 0.220 0.780 50 H 0.066 0.934 51 H 0.075 0.925 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.610 16.145 -1.161 17.484 hybrid contribution 0.964 0.343 -0.169 1.038 sum -5.646 16.488 -1.331 17.479 Atomic orbital electron populations 1.23600 0.95886 1.00914 1.00360 1.22690 0.95997 0.97354 1.00199 1.20137 0.96413 0.96834 0.92653 0.90492 1.21547 0.97904 1.02122 0.93922 1.21751 0.99770 1.01978 0.97170 1.21672 0.98664 1.04607 0.92075 1.20212 0.88489 0.75469 0.83187 1.90663 1.14817 1.50983 1.86097 1.48912 1.08788 1.72391 1.04775 1.22240 0.97035 0.98831 0.82476 1.20701 0.97516 0.99673 0.87244 0.88536 1.20351 1.05626 0.89408 0.94010 1.22359 1.13901 0.99549 0.83741 1.45371 1.55318 1.07837 1.06727 1.21972 1.03200 0.85191 0.96351 1.24985 1.06576 0.78858 1.00167 1.70234 1.18455 1.32959 0.97801 1.21135 0.92364 0.87760 0.91782 0.91671 1.42427 1.05341 1.05719 1.81462 1.19157 0.83639 0.94979 1.39703 0.91244 1.24725 0.97241 0.96181 1.02266 1.69663 1.31297 1.03558 1.52973 0.86316 0.85079 0.77283 0.77754 1.21291 1.21733 1.21298 1.23653 0.80659 0.99411 1.01799 0.89396 0.88966 0.87834 0.91550 0.91951 0.93032 0.92393 0.93085 0.89322 0.88127 0.90340 0.91750 0.81150 0.90858 0.89879 0.89652 0.78177 0.77959 0.93418 0.92488 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 13.22 29.02 0.38 -2.09 16 2 C -0.14 -2.12 6.76 -36.02 -0.24 -2.36 16 3 C -0.04 -0.55 1.82 -91.77 -0.17 -0.72 16 4 H 0.08 1.06 7.60 -51.93 -0.39 0.67 16 5 C -0.12 -1.30 5.39 -26.73 -0.14 -1.45 16 6 C -0.15 -1.51 9.73 37.16 0.36 -1.15 16 7 C -0.13 -1.87 4.14 -27.88 -0.12 -1.98 16 8 C 0.54 9.20 7.66 -10.99 -0.08 9.12 16 9 O -0.55 -10.61 14.43 5.56 0.08 -10.53 16 10 N -0.62 -10.18 3.31 -169.08 -0.56 -10.74 16 11 C 0.12 1.85 6.52 -2.41 -0.02 1.84 16 12 C -0.03 -0.53 3.34 -90.38 -0.30 -0.83 16 13 H 0.10 2.00 7.67 -51.93 -0.40 1.60 16 14 C 0.04 0.59 5.88 -82.85 -0.49 0.10 16 15 C -0.06 -0.82 10.55 -16.56 -0.17 -1.00 16 16 N -0.47 -5.15 3.15 -126.00 -0.40 -5.54 16 17 C 0.08 0.44 11.18 59.85 0.67 1.11 16 18 C 0.18 2.30 12.56 -90.38 -1.14 1.16 16 19 N -0.48 -8.44 11.25 -10.87 -0.12 -8.57 16 20 C 0.18 3.53 3.36 -66.33 -0.22 3.31 16 21 H 0.07 1.31 7.66 -51.93 -0.40 0.91 16 22 N -0.71 -17.41 5.13 -51.88 -0.27 -17.68 16 23 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 24 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 27 Si 0.90 22.12 29.55 -169.99 -5.02 17.09 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 C 0.07 1.17 6.66 -2.21 -0.01 1.15 16 32 H 0.09 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.09 1.33 7.83 -52.49 -0.41 0.92 16 34 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.62 7.38 -51.93 -0.38 0.23 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.10 1.57 7.96 -51.93 -0.41 1.16 16 42 H 0.08 1.32 7.88 -51.93 -0.41 0.91 16 43 H 0.06 0.86 6.14 -51.92 -0.32 0.54 16 44 H 0.17 1.76 7.05 -52.49 -0.37 1.39 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.20 1.81 8.06 -52.49 -0.42 1.39 16 49 H 0.39 10.44 7.55 -40.82 -0.31 10.13 16 50 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.09 1.56 7.23 -51.93 -0.38 1.18 16 LS Contribution 420.99 15.07 6.34 6.34 Total: -1.00 -34.45 420.99 -9.96 -44.40 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -8.80 Total: 13.18 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.94 Total: -0.81 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.62 Total: -69.67 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -34.45 -9.96 -44.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130656759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.094 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds