Wall clock time and date at job start Wed Apr 1 2020 03:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99925 * 2 1 4 4 H 1.08992 * 109.47337 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47219 * 120.00124 * 3 2 1 6 6 C 1.53004 * 109.47064 * 294.99730 * 5 3 2 7 7 C 1.53006 * 109.47131 * 239.99807 * 3 2 1 8 8 C 1.50699 * 109.46866 * 65.00047 * 7 3 2 9 9 O 1.21282 * 120.00040 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00033 * 180.02562 * 8 7 3 11 11 C 1.48141 * 127.83880 * 179.97438 * 10 8 7 12 12 C 1.54383 * 104.61817 * 219.58333 * 11 10 8 13 13 H 1.09005 * 110.34221 * 95.00979 * 12 11 10 14 14 C 1.50701 * 110.34202 * 217.15842 * 12 11 10 15 15 C 1.34671 * 125.99159 * 33.26188 * 14 12 11 16 16 N 1.36887 * 106.81490 * 179.84891 * 15 14 12 17 17 C 1.46505 * 126.39335 * 180.12301 * 16 15 14 18 18 C 1.35046 * 107.20836 * 0.41161 * 16 15 14 19 19 N 1.30495 * 108.69737 * 359.74364 * 18 16 15 20 20 C 1.54277 * 104.96187 * 336.13232 * 12 11 10 21 21 H 1.08998 * 110.35037 * 241.12921 * 20 12 11 22 22 N 1.46506 * 110.34270 * 118.97546 * 20 12 11 23 23 C 1.36931 * 120.00356 * 155.00385 * 22 20 12 24 24 H 1.08005 * 119.99724 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00355 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99699 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00221 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47415 * 59.99378 * 27 25 23 29 29 H 1.48495 * 109.47238 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.46688 * 299.99375 * 27 25 23 31 31 C 1.48137 * 127.83630 * 359.67829 * 10 8 7 32 32 H 1.07997 * 119.99929 * 180.02562 * 1 2 3 33 33 H 1.08002 * 120.00069 * 359.97438 * 1 2 3 34 34 H 1.08004 * 120.00173 * 179.97438 * 2 1 3 35 35 H 1.09003 * 109.46920 * 54.99870 * 5 3 2 36 36 H 1.08995 * 109.47278 * 174.99803 * 5 3 2 37 37 H 1.08992 * 109.46962 * 300.00150 * 6 5 3 38 38 H 1.09003 * 109.46815 * 60.00164 * 6 5 3 39 39 H 1.08994 * 109.46990 * 179.97438 * 6 5 3 40 40 H 1.08993 * 109.46955 * 185.00266 * 7 3 2 41 41 H 1.09000 * 109.47050 * 305.00095 * 7 3 2 42 42 H 1.09003 * 110.40744 * 338.37196 * 11 10 8 43 43 H 1.09008 * 110.40598 * 100.67888 * 11 10 8 44 44 H 1.07992 * 126.58960 * 359.96758 * 15 14 12 45 45 H 1.08997 * 109.46869 * 270.31854 * 17 16 15 46 46 H 1.08994 * 109.47060 * 30.31779 * 17 16 15 47 47 H 1.08998 * 109.46546 * 150.31980 * 17 16 15 48 48 H 1.07997 * 125.65134 * 179.71841 * 18 16 15 49 49 H 0.97005 * 119.99828 * 335.00014 * 22 20 12 50 50 H 0.97008 * 119.99695 * 180.02562 * 26 25 23 51 51 H 1.09002 * 110.40924 * 259.20191 * 31 10 8 52 52 H 1.09000 * 110.41133 * 21.62950 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0564 1.4308 2.4953 7 6 2.9431 1.3862 -1.2493 8 6 2.0698 1.4300 -2.4766 9 8 0.8627 1.3990 -2.3633 10 7 2.6301 1.5027 -3.7002 11 6 1.9442 1.5541 -5.0122 12 6 2.8036 0.6647 -5.9363 13 1 2.4001 -0.3474 -5.9705 14 6 2.8612 1.2517 -7.3230 15 6 2.8500 2.5633 -7.6283 16 7 2.9200 2.6530 -8.9924 17 6 2.9384 3.8866 -9.7826 18 6 2.9623 1.3921 -9.4741 19 7 2.9268 0.5594 -8.4700 20 6 4.2064 0.6615 -5.2941 21 1 4.9387 1.0856 -5.9811 22 7 4.5914 -0.7011 -4.9182 23 6 5.9155 -1.0359 -4.8193 24 1 6.6760 -0.2952 -5.0181 25 6 6.2803 -2.3271 -4.4637 26 7 5.3534 -3.2296 -4.2211 27 14 8.0866 -2.7836 -4.3281 28 1 8.7368 -1.9312 -3.3006 29 1 8.2084 -4.2107 -3.9361 30 1 8.7504 -2.5717 -5.6395 31 6 4.0715 1.5553 -4.0379 32 1 -0.5400 -0.9353 0.0004 33 1 -0.5400 0.9353 0.0004 34 1 1.8500 -0.9353 0.0004 35 1 3.5906 0.5105 1.2951 36 1 3.5540 2.2878 1.2056 37 1 1.4090 2.3064 2.4494 38 1 1.4455 0.5291 2.5390 39 1 2.6831 1.4881 3.3853 40 1 3.5540 2.2878 -1.2056 41 1 3.5906 0.5105 -1.2951 42 1 0.9344 1.1520 -4.9292 43 1 1.9153 2.5776 -5.3862 44 1 2.7979 3.3862 -6.9308 45 1 1.9167 4.1764 -10.0277 46 1 3.4128 4.6805 -9.2058 47 1 3.4995 3.7205 -10.7022 48 1 3.0162 1.1183 -10.5174 49 1 3.9083 -1.3662 -4.7393 50 1 5.6084 -4.1319 -3.9722 51 1 4.3721 2.5787 -4.2628 52 1 4.6687 1.1542 -3.2190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130656759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:03 Heat of formation + Delta-G solvation = 41.539700 kcal Electronic energy + Delta-G solvation = -31142.171602 eV Core-core repulsion = 27142.844780 eV Total energy + Delta-G solvation = -3999.326821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.98147 -41.00983 -39.11972 -37.41909 -35.69376 -34.99841 -33.31203 -32.60459 -32.36567 -31.12227 -29.37285 -28.83085 -27.56367 -26.24029 -25.42956 -24.04925 -22.51018 -22.14188 -21.99840 -20.63235 -20.61689 -19.93289 -19.05926 -18.01742 -17.86357 -16.94408 -16.71726 -16.43158 -16.35997 -15.89770 -15.53352 -15.38246 -15.32810 -14.95543 -14.85211 -14.78960 -14.55875 -14.21458 -13.88091 -13.73066 -13.46538 -13.32066 -13.23136 -13.14420 -12.97334 -12.80409 -12.75597 -12.49669 -12.35958 -12.17739 -12.11588 -12.03334 -11.91443 -11.68015 -11.65126 -11.36050 -11.03813 -10.79558 -10.76069 -10.38848 -10.02108 -9.69715 -9.29469 -8.85055 -7.89010 -5.18205 1.18780 1.48828 1.52074 1.54051 1.57835 1.74437 2.05800 2.09712 2.22668 2.59349 3.41601 3.53424 3.57708 3.85443 3.85880 3.93336 4.03358 4.04193 4.11032 4.14083 4.35298 4.38302 4.40320 4.41112 4.46146 4.53155 4.53965 4.59368 4.64645 4.68984 4.75492 4.79808 4.80214 4.86121 4.96081 5.01650 5.05965 5.09039 5.16226 5.19722 5.23386 5.37639 5.41184 5.45619 5.48103 5.57460 5.85320 5.86378 6.03981 6.30252 6.41694 6.68817 7.26922 7.29463 7.36518 8.10589 8.34918 9.34292 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006785 B = 0.004002 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4125.990354 B = 6995.323895 C =10190.883489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.155 4.155 3 C -0.036 4.036 4 H 0.075 0.925 5 C -0.113 4.113 6 C -0.148 4.148 7 C -0.124 4.124 8 C 0.529 3.471 9 O -0.574 6.574 10 N -0.617 5.617 11 C 0.126 3.874 12 C -0.017 4.017 13 H 0.049 0.951 14 C -0.007 4.007 15 C -0.042 4.042 16 N -0.460 5.460 17 C 0.068 3.932 18 C 0.177 3.823 19 N -0.544 5.544 20 C 0.178 3.822 21 H 0.061 0.939 22 N -0.725 5.725 23 C -0.235 4.235 24 H 0.081 0.919 25 C -0.074 4.074 26 N -0.971 5.971 27 Si 0.969 3.031 28 H -0.271 1.271 29 H -0.301 1.301 30 H -0.282 1.282 31 C 0.086 3.914 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.203 0.797 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.234 0.766 49 H 0.367 0.633 50 H 0.248 0.752 51 H 0.100 0.900 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.012 20.935 -1.765 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C -0.055 4.055 4 H 0.093 0.907 5 C -0.151 4.151 6 C -0.205 4.205 7 C -0.164 4.164 8 C 0.319 3.681 9 O -0.454 6.454 10 N -0.350 5.350 11 C 0.003 3.997 12 C -0.039 4.039 13 H 0.067 0.933 14 C -0.136 4.136 15 C -0.176 4.176 16 N -0.142 5.142 17 C -0.073 4.073 18 C -0.105 4.105 19 N -0.263 5.263 20 C 0.068 3.932 21 H 0.079 0.921 22 N -0.363 5.363 23 C -0.366 4.366 24 H 0.099 0.901 25 C -0.266 4.266 26 N -0.622 5.622 27 Si 0.799 3.201 28 H -0.197 1.197 29 H -0.228 1.228 30 H -0.208 1.208 31 C -0.040 4.040 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.219 0.781 45 H 0.108 0.892 46 H 0.118 0.882 47 H 0.124 0.876 48 H 0.250 0.750 49 H 0.199 0.801 50 H 0.057 0.943 51 H 0.118 0.882 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.468 20.228 -1.773 21.029 hybrid contribution 0.534 -0.820 -0.152 0.990 sum -4.934 19.409 -1.925 20.118 Atomic orbital electron populations 1.23671 0.95957 1.01177 1.00338 1.22822 0.96267 0.97857 1.00316 1.20124 0.96417 0.95672 0.93270 0.90655 1.21532 0.97704 1.02725 0.93115 1.21735 0.99792 1.01721 0.97238 1.21695 0.98346 1.05217 0.91143 1.20753 0.88532 0.74835 0.83936 1.90647 1.16043 1.52198 1.86501 1.48995 1.08924 1.72092 1.05012 1.22242 0.95565 1.00108 0.81789 1.20393 0.96333 0.97891 0.89265 0.93252 1.20224 1.09319 0.91065 0.93021 1.22658 1.11151 0.98634 0.85114 1.45655 1.53305 1.08887 1.06365 1.22376 1.04944 0.83202 0.96747 1.25524 1.05095 0.79272 1.00651 1.70111 1.21009 1.35740 0.99396 1.21342 0.93173 0.85643 0.93063 0.92095 1.42610 1.04195 1.07601 1.81883 1.19581 0.84868 0.94993 1.37171 0.90115 1.25520 1.01162 0.96444 1.03436 1.69850 1.33278 1.03562 1.55462 0.85272 0.80451 0.76397 0.78004 1.19699 1.22807 1.20814 1.23428 0.80409 1.00714 0.99408 0.89083 0.88796 0.89004 0.92182 0.90091 0.92467 0.93454 0.91675 0.86381 0.89673 0.92036 0.88138 0.78066 0.89181 0.88151 0.87623 0.75021 0.80121 0.94327 0.88185 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.17 13.22 67.78 0.90 -4.28 16 2 C -0.15 -4.64 6.76 25.65 0.17 -4.47 16 3 C -0.04 -0.93 1.82 -11.54 -0.02 -0.95 16 4 H 0.08 2.00 7.60 -2.39 -0.02 1.98 16 5 C -0.11 -2.34 5.39 30.60 0.16 -2.18 16 6 C -0.15 -2.76 9.73 71.98 0.70 -2.06 16 7 C -0.12 -3.45 4.14 29.85 0.12 -3.33 16 8 C 0.53 17.90 7.66 87.66 0.67 18.57 16 9 O -0.57 -22.31 14.43 -3.04 -0.04 -22.35 16 10 N -0.62 -19.93 3.31 -807.24 -2.67 -22.61 16 11 C 0.13 3.90 6.52 86.53 0.56 4.47 16 12 C -0.02 -0.63 3.34 -10.64 -0.04 -0.67 16 13 H 0.05 2.23 7.67 -2.38 -0.02 2.21 16 14 C -0.01 -0.24 5.88 41.39 0.24 0.00 16 15 C -0.04 -0.96 10.55 83.09 0.88 -0.08 16 16 N -0.46 -8.65 3.15 -552.54 -1.74 -10.40 16 17 C 0.07 0.48 11.18 127.77 1.43 1.91 16 18 C 0.18 4.34 12.56 180.26 2.26 6.61 16 19 N -0.54 -19.51 11.25 -188.31 -2.12 -21.63 16 20 C 0.18 6.93 3.36 46.02 0.15 7.09 16 21 H 0.06 2.42 7.66 -2.39 -0.02 2.40 16 22 N -0.72 -36.85 5.13 -318.04 -1.63 -38.48 16 23 C -0.23 -12.81 9.96 84.03 0.84 -11.98 16 24 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 25 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 26 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 27 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 28 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 29 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 30 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 31 C 0.09 2.68 6.66 86.67 0.58 3.26 16 32 H 0.09 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.09 2.73 7.83 -2.91 -0.02 2.71 16 34 H 0.09 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.05 0.98 7.38 -2.39 -0.02 0.96 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.08 2.67 7.96 -2.39 -0.02 2.65 16 42 H 0.06 2.12 7.88 -2.39 -0.02 2.10 16 43 H 0.10 2.38 6.14 -2.38 -0.01 2.37 16 44 H 0.20 3.20 7.05 -2.91 -0.02 3.18 16 45 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.23 3.69 8.06 -2.91 -0.02 3.67 16 49 H 0.37 21.15 7.55 -92.70 -0.70 20.45 16 50 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 51 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 52 H 0.08 2.60 7.23 -2.39 -0.02 2.58 16 Total: -1.00 -79.89 420.99 4.38 -75.51 By element: Atomic # 1 Polarization: 43.97 SS G_CDS: 0.20 Total: 44.17 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 10.09 Total: 8.14 kcal Atomic # 7 Polarization: -145.80 SS G_CDS: -7.88 Total: -153.68 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.04 Total: -22.35 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -79.89 4.38 -75.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130656759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.048 kcal (2) G-P(sol) polarization free energy of solvation -79.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds