Wall clock time and date at job start Wed Apr 1 2020 03:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47150 * 2 1 4 4 H 1.09006 * 109.46949 * 54.99709 * 3 2 1 5 5 C 1.50696 * 109.46945 * 174.99768 * 3 2 1 6 6 H 1.08001 * 120.00084 * 120.00487 * 5 3 2 7 7 C 1.37878 * 120.00313 * 299.99910 * 5 3 2 8 8 N 1.31518 * 119.99484 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00167 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47032 * 90.00136 * 9 7 5 11 11 H 1.48502 * 109.47074 * 210.00242 * 9 7 5 12 12 H 1.48496 * 109.46773 * 330.00291 * 9 7 5 13 13 N 1.46902 * 109.47456 * 295.00019 * 3 2 1 14 14 C 1.47010 * 110.99738 * 303.63737 * 13 3 2 15 15 C 1.53101 * 109.25772 * 177.60825 * 14 13 3 16 16 O 1.43005 * 109.26043 * 56.84635 * 15 14 13 17 17 C 1.43023 * 113.73627 * 301.33198 * 16 15 14 18 18 C 1.47005 * 111.00075 * 179.97438 * 13 3 2 19 19 H 1.09001 * 109.50788 * 62.45816 * 18 13 3 20 20 C 1.50702 * 109.54583 * 302.34627 * 18 13 3 21 21 N 1.31795 * 119.08138 * 314.93063 * 20 18 13 22 22 C 1.32546 * 121.00951 * 179.75816 * 21 20 18 23 23 C 1.38123 * 119.19603 * 0.49960 * 22 21 20 24 24 C 1.39618 * 118.33531 * 359.75538 * 23 22 21 25 25 N 1.38545 * 120.53388 * 180.02562 * 24 23 22 26 26 C 1.46502 * 119.99793 * 359.97438 * 25 24 23 27 27 C 1.52991 * 109.47306 * 179.97438 * 26 25 24 28 28 C 1.53005 * 117.50087 * 243.74703 * 27 26 25 29 29 C 1.53007 * 117.49980 * 175.08582 * 27 26 25 30 30 N 1.31750 * 119.08458 * 135.19542 * 20 18 13 31 31 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47363 * 300.00197 * 1 2 3 33 33 H 1.09005 * 109.46948 * 59.99831 * 1 2 3 34 34 H 1.09001 * 109.47117 * 240.00243 * 2 1 3 35 35 H 1.08995 * 109.46961 * 120.00204 * 2 1 3 36 36 H 0.97003 * 119.99533 * 179.97438 * 8 7 5 37 37 H 1.09005 * 109.50762 * 297.54365 * 14 13 3 38 38 H 1.08996 * 109.51150 * 57.66818 * 14 13 3 39 39 H 1.09007 * 109.50597 * 176.78233 * 15 14 13 40 40 H 1.08999 * 109.50386 * 296.86609 * 15 14 13 41 41 H 1.08999 * 109.50605 * 298.72944 * 17 16 15 42 42 H 1.09004 * 109.50604 * 178.60658 * 17 16 15 43 43 H 1.07997 * 120.40517 * 180.25618 * 22 21 20 44 44 H 1.07999 * 120.82742 * 179.77393 * 23 22 21 45 45 H 0.96995 * 120.00253 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.46908 * 300.00356 * 26 25 24 47 47 H 1.09002 * 109.47184 * 59.99716 * 26 25 24 48 48 H 1.09008 * 115.55136 * 29.41513 * 27 26 25 49 49 H 1.09002 * 117.49245 * 359.97438 * 28 27 26 50 50 H 1.09001 * 117.49961 * 145.01703 * 28 27 26 51 51 H 1.08998 * 117.49691 * 214.97992 * 29 27 26 52 52 H 1.08996 * 117.49664 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3366 2.1729 9 14 6.0049 0.8811 1.3819 10 1 6.4416 2.1141 2.0850 11 1 6.4395 -0.3099 2.1550 12 1 6.6135 0.8416 0.0280 13 7 1.6514 2.0993 -1.2552 14 6 2.1486 1.3496 -2.4180 15 6 1.6717 2.0342 -3.7017 16 8 2.1154 3.3937 -3.7041 17 6 1.6490 4.1534 -2.5857 18 6 2.1252 3.4905 -1.2904 19 1 3.2145 3.5051 -1.2536 20 6 1.5715 4.2418 -0.1072 21 7 0.2986 4.0995 0.2034 22 6 -0.2272 4.7383 1.2389 23 6 0.5744 5.5723 1.9938 24 6 1.9170 5.7045 1.6346 25 7 2.7620 6.5285 2.3603 26 6 2.2484 7.2700 3.5147 27 6 3.3774 8.0966 4.1333 28 6 3.8044 7.7523 5.5616 29 6 3.0159 9.0352 5.2863 30 7 2.3721 5.0265 0.5849 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.8292 -0.0619 2.9496 37 1 3.2383 1.3295 -2.3993 38 1 1.7646 0.3300 -2.3850 39 1 2.0852 1.5148 -4.5663 40 1 0.5830 2.0058 -3.7464 41 1 0.5596 4.1875 -2.5976 42 1 2.0461 5.1669 -2.6432 43 1 -1.2705 4.6114 1.4871 44 1 0.1725 6.1084 2.8409 45 1 3.6935 6.6143 2.1042 46 1 1.4460 7.9338 3.1924 47 1 1.8642 6.5687 4.2554 48 1 4.1532 8.4249 3.4414 49 1 3.2805 6.9370 6.0607 50 1 4.8609 7.8543 5.8096 51 1 3.5540 9.9807 5.3532 52 1 1.9737 9.0634 5.6044 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167706.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:22 Heat of formation + Delta-G solvation = 48.312283 kcal Electronic energy + Delta-G solvation = -32164.853558 eV Core-core repulsion = 28165.820418 eV Total energy + Delta-G solvation = -3999.033140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.61601 -38.95863 -38.10944 -36.03371 -35.46515 -33.07893 -32.43891 -31.67473 -30.77171 -29.47568 -27.49081 -26.88424 -25.22744 -24.42961 -23.20075 -22.71320 -22.63993 -21.81353 -20.94158 -20.07094 -18.93762 -17.56875 -17.18854 -16.20343 -16.05666 -15.87347 -15.59084 -15.02157 -14.88948 -14.64173 -14.55721 -14.25900 -14.19572 -14.07680 -13.62598 -13.38011 -13.25528 -13.11767 -12.69397 -12.23616 -11.85450 -11.78433 -11.71887 -11.64306 -11.22550 -11.08646 -10.97166 -10.85296 -10.74886 -10.70652 -10.66093 -10.36379 -10.28730 -10.12753 -9.71477 -9.65374 -9.50642 -9.40834 -9.16159 -8.79749 -8.58726 -8.31567 -7.85721 -7.13027 -5.95110 -4.07491 1.54318 1.91438 3.03394 3.28803 3.35206 3.39338 3.52099 4.25338 4.33041 4.36472 4.43182 4.58831 4.61570 4.68003 4.75696 4.92764 5.07482 5.19107 5.29361 5.30959 5.34657 5.44081 5.53671 5.59685 5.61456 5.68624 5.76673 5.80279 5.84812 5.86619 5.93723 5.97774 6.04247 6.15899 6.36966 6.42599 6.51376 6.60348 6.68192 6.73975 6.79490 7.11123 7.13653 7.26181 7.31050 7.54790 7.58768 7.65059 7.77609 7.89628 7.95459 8.15076 8.28867 8.46367 8.90080 9.01087 9.59446 11.03980 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009045 B = 0.004073 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.911463 B = 6872.958073 C = 8292.390821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 C 0.219 3.781 4 H 0.040 0.960 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.071 3.929 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.511 5.511 14 C 0.022 3.978 15 C 0.061 3.939 16 O -0.387 6.387 17 C 0.078 3.922 18 C 0.124 3.876 19 H 0.079 0.921 20 C 0.398 3.602 21 N -0.525 5.525 22 C 0.171 3.829 23 C -0.306 4.306 24 C 0.436 3.564 25 N -0.716 5.716 26 C 0.161 3.839 27 C -0.169 4.169 28 C -0.176 4.176 29 C -0.170 4.170 30 N -0.563 5.563 31 H 0.023 0.977 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.034 0.966 35 H 0.092 0.908 36 H 0.259 0.741 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.158 0.842 44 H 0.131 0.869 45 H 0.406 0.594 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.111 0.889 49 H 0.098 0.902 50 H 0.096 0.904 51 H 0.097 0.903 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 13.343 1.520 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.152 4.152 3 C 0.113 3.887 4 H 0.058 0.942 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.131 4.131 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.236 5.236 14 C -0.107 4.107 15 C -0.016 4.016 16 O -0.305 6.305 17 C 0.000 4.000 18 C 0.012 3.988 19 H 0.097 0.903 20 C 0.129 3.871 21 N -0.243 5.243 22 C 0.007 3.993 23 C -0.335 4.335 24 C 0.192 3.808 25 N -0.350 5.350 26 C 0.037 3.963 27 C -0.187 4.187 28 C -0.213 4.213 29 C -0.208 4.208 30 N -0.286 5.286 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.175 0.825 44 H 0.149 0.851 45 H 0.242 0.758 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.129 0.871 49 H 0.117 0.883 50 H 0.114 0.886 51 H 0.115 0.885 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.176 12.935 0.925 13.963 hybrid contribution 1.977 0.278 1.506 2.501 sum -3.199 13.213 2.432 13.811 Atomic orbital electron populations 1.21673 0.98559 0.98107 1.00870 1.21647 0.92502 0.99046 1.01983 1.19264 0.92835 0.91021 0.85553 0.94237 1.21705 0.92794 1.37748 1.05510 0.92654 1.24846 0.97606 0.95013 0.95646 1.69885 1.34641 1.38528 1.09418 0.86712 0.86527 0.77355 0.78144 1.20869 1.21313 1.19917 1.62715 1.57574 0.99048 1.04289 1.22674 0.99370 0.98471 0.90148 1.22759 0.98839 0.82060 0.97917 1.87912 1.75114 1.22946 1.44571 1.22556 0.99005 0.94004 0.84425 1.20728 0.98790 0.90264 0.88981 0.90296 1.22323 0.84871 0.87502 0.92365 1.68320 1.14176 1.23600 1.18172 1.22865 0.99624 0.88083 0.88716 1.22001 0.94679 1.09848 1.06931 1.18385 0.87803 0.86688 0.87915 1.44294 1.12148 1.47855 1.30751 1.20886 0.94960 0.93426 0.87045 1.22405 1.01245 1.03069 0.92015 1.23117 1.01063 0.99177 0.97908 1.22963 1.01459 0.94677 1.01675 1.67674 1.39619 1.12705 1.08638 0.95801 0.94301 0.93178 0.94764 0.89009 0.93091 0.93395 0.89627 0.89443 0.92873 0.92147 0.89632 0.82486 0.85109 0.75793 0.91521 0.91670 0.87093 0.88348 0.88575 0.88484 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.71 4.94 -26.73 -0.13 -2.85 16 3 C 0.22 5.45 1.49 -68.87 -0.10 5.35 16 4 H 0.04 1.13 6.78 -51.93 -0.35 0.78 16 5 C -0.54 -14.61 7.10 -34.44 -0.24 -14.85 16 6 H 0.06 1.54 5.79 -52.49 -0.30 1.23 16 7 C 0.07 1.97 5.29 -17.82 -0.09 1.88 16 8 N -0.89 -25.36 11.29 55.43 0.63 -24.73 16 9 Si 0.88 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.51 -11.00 3.83 -221.18 -0.85 -11.84 16 14 C 0.02 0.43 4.95 -3.71 -0.02 0.41 16 15 C 0.06 1.01 7.01 37.21 0.26 1.27 16 16 O -0.39 -7.01 10.83 -35.23 -0.38 -7.39 16 17 C 0.08 1.40 6.27 37.21 0.23 1.64 16 18 C 0.12 2.58 2.03 -68.76 -0.14 2.45 16 19 H 0.08 1.87 6.53 -51.93 -0.34 1.53 16 20 C 0.40 8.28 5.09 -157.23 -0.80 7.48 16 21 N -0.53 -10.31 9.77 -10.81 -0.11 -10.41 16 22 C 0.17 2.79 11.29 -17.29 -0.20 2.60 16 23 C -0.31 -4.69 9.40 -39.11 -0.37 -5.06 16 24 C 0.44 7.52 7.71 -154.78 -1.19 6.33 16 25 N -0.72 -9.88 5.71 -60.27 -0.34 -10.23 16 26 C 0.16 1.65 5.21 -4.05 -0.02 1.62 16 27 C -0.17 -1.46 5.84 -90.62 -0.53 -1.99 16 28 C -0.18 -1.46 10.18 -26.69 -0.27 -1.73 16 29 C -0.17 -1.19 10.26 -26.69 -0.27 -1.47 16 30 N -0.56 -11.50 10.35 -9.96 -0.10 -11.60 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 1.01 7.75 -51.93 -0.40 0.61 16 34 H 0.03 0.79 6.02 -51.93 -0.31 0.47 16 35 H 0.09 2.48 5.95 -51.93 -0.31 2.17 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.05 1.04 6.78 -51.93 -0.35 0.68 16 38 H 0.09 1.63 6.00 -51.93 -0.31 1.32 16 39 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 44 H 0.13 1.56 6.87 -52.49 -0.36 1.20 16 45 H 0.41 5.52 8.53 -40.82 -0.35 5.18 16 46 H 0.07 0.61 7.98 -51.93 -0.41 0.19 16 47 H 0.07 0.69 7.71 -51.93 -0.40 0.29 16 48 H 0.11 0.94 8.04 -51.92 -0.42 0.52 16 49 H 0.10 0.84 8.03 -51.93 -0.42 0.43 16 50 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 404.89 15.07 6.10 6.10 Total: -1.00 -31.31 404.89 -12.00 -43.32 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -8.40 Total: 9.40 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -3.53 Total: 0.63 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -0.77 Total: -68.82 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.38 Total: -7.39 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.31 -12.00 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167706.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.629 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds