Wall clock time and date at job start Wed Apr 1 2020 03:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47150 * 2 1 4 4 H 1.09006 * 109.46949 * 54.99709 * 3 2 1 5 5 C 1.50696 * 109.46945 * 174.99768 * 3 2 1 6 6 H 1.08001 * 120.00084 * 120.00487 * 5 3 2 7 7 C 1.37878 * 120.00313 * 299.99910 * 5 3 2 8 8 N 1.31518 * 119.99484 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00167 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47032 * 90.00136 * 9 7 5 11 11 H 1.48502 * 109.47074 * 210.00242 * 9 7 5 12 12 H 1.48496 * 109.46773 * 330.00291 * 9 7 5 13 13 N 1.46902 * 109.47456 * 295.00019 * 3 2 1 14 14 C 1.47010 * 110.99738 * 303.63737 * 13 3 2 15 15 C 1.53101 * 109.25772 * 177.60825 * 14 13 3 16 16 O 1.43005 * 109.26043 * 56.84635 * 15 14 13 17 17 C 1.43023 * 113.73627 * 301.33198 * 16 15 14 18 18 C 1.47005 * 111.00075 * 179.97438 * 13 3 2 19 19 H 1.09001 * 109.50788 * 62.45816 * 18 13 3 20 20 C 1.50702 * 109.54583 * 302.34627 * 18 13 3 21 21 N 1.31795 * 119.08138 * 314.93063 * 20 18 13 22 22 C 1.32546 * 121.00951 * 179.75816 * 21 20 18 23 23 C 1.38123 * 119.19603 * 0.49960 * 22 21 20 24 24 C 1.39618 * 118.33531 * 359.75538 * 23 22 21 25 25 N 1.38545 * 120.53388 * 180.02562 * 24 23 22 26 26 C 1.46502 * 119.99793 * 359.97438 * 25 24 23 27 27 C 1.52991 * 109.47306 * 179.97438 * 26 25 24 28 28 C 1.53005 * 117.50087 * 243.74703 * 27 26 25 29 29 C 1.53007 * 117.49980 * 175.08582 * 27 26 25 30 30 N 1.31750 * 119.08458 * 135.19542 * 20 18 13 31 31 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47363 * 300.00197 * 1 2 3 33 33 H 1.09005 * 109.46948 * 59.99831 * 1 2 3 34 34 H 1.09001 * 109.47117 * 240.00243 * 2 1 3 35 35 H 1.08995 * 109.46961 * 120.00204 * 2 1 3 36 36 H 0.97003 * 119.99533 * 179.97438 * 8 7 5 37 37 H 1.09005 * 109.50762 * 297.54365 * 14 13 3 38 38 H 1.08996 * 109.51150 * 57.66818 * 14 13 3 39 39 H 1.09007 * 109.50597 * 176.78233 * 15 14 13 40 40 H 1.08999 * 109.50386 * 296.86609 * 15 14 13 41 41 H 1.08999 * 109.50605 * 298.72944 * 17 16 15 42 42 H 1.09004 * 109.50604 * 178.60658 * 17 16 15 43 43 H 1.07997 * 120.40517 * 180.25618 * 22 21 20 44 44 H 1.07999 * 120.82742 * 179.77393 * 23 22 21 45 45 H 0.96995 * 120.00253 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.46908 * 300.00356 * 26 25 24 47 47 H 1.09002 * 109.47184 * 59.99716 * 26 25 24 48 48 H 1.09008 * 115.55136 * 29.41513 * 27 26 25 49 49 H 1.09002 * 117.49245 * 359.97438 * 28 27 26 50 50 H 1.09001 * 117.49961 * 145.01703 * 28 27 26 51 51 H 1.08998 * 117.49691 * 214.97992 * 29 27 26 52 52 H 1.08996 * 117.49664 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3366 2.1729 9 14 6.0049 0.8811 1.3819 10 1 6.4416 2.1141 2.0850 11 1 6.4395 -0.3099 2.1550 12 1 6.6135 0.8416 0.0280 13 7 1.6514 2.0993 -1.2552 14 6 2.1486 1.3496 -2.4180 15 6 1.6717 2.0342 -3.7017 16 8 2.1154 3.3937 -3.7041 17 6 1.6490 4.1534 -2.5857 18 6 2.1252 3.4905 -1.2904 19 1 3.2145 3.5051 -1.2536 20 6 1.5715 4.2418 -0.1072 21 7 0.2986 4.0995 0.2034 22 6 -0.2272 4.7383 1.2389 23 6 0.5744 5.5723 1.9938 24 6 1.9170 5.7045 1.6346 25 7 2.7620 6.5285 2.3603 26 6 2.2484 7.2700 3.5147 27 6 3.3774 8.0966 4.1333 28 6 3.8044 7.7523 5.5616 29 6 3.0159 9.0352 5.2863 30 7 2.3721 5.0265 0.5849 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.8292 -0.0619 2.9496 37 1 3.2383 1.3295 -2.3993 38 1 1.7646 0.3300 -2.3850 39 1 2.0852 1.5148 -4.5663 40 1 0.5830 2.0058 -3.7464 41 1 0.5596 4.1875 -2.5976 42 1 2.0461 5.1669 -2.6432 43 1 -1.2705 4.6114 1.4871 44 1 0.1725 6.1084 2.8409 45 1 3.6935 6.6143 2.1042 46 1 1.4460 7.9338 3.1924 47 1 1.8642 6.5687 4.2554 48 1 4.1532 8.4249 3.4414 49 1 3.2805 6.9370 6.0607 50 1 4.8609 7.8543 5.8096 51 1 3.5540 9.9807 5.3532 52 1 1.9737 9.0634 5.6044 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167706.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:21 Heat of formation + Delta-G solvation = 28.049002 kcal Electronic energy + Delta-G solvation = -32165.732240 eV Core-core repulsion = 28165.820418 eV Total energy + Delta-G solvation = -3999.911822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.99483 -40.44878 -38.92283 -37.68795 -36.58921 -34.73033 -34.11423 -33.24828 -32.39798 -30.82050 -29.29197 -27.87332 -27.05133 -25.85081 -24.67076 -24.35680 -23.30388 -23.14098 -21.80791 -21.67527 -20.72139 -18.87426 -18.61647 -18.00861 -17.44070 -17.14709 -16.86541 -16.49196 -16.25243 -16.07352 -15.93175 -15.67905 -15.42403 -15.17618 -15.02205 -14.92457 -14.59870 -14.47472 -14.36195 -13.81265 -13.47405 -13.33705 -13.15916 -12.90431 -12.71240 -12.51888 -12.44720 -12.42272 -12.24195 -12.18707 -12.15606 -11.66698 -11.60830 -11.39625 -11.30555 -11.18817 -11.10863 -11.07221 -10.76949 -10.44134 -10.30495 -9.99339 -9.04506 -8.97810 -8.05736 -6.26295 0.19544 0.59601 1.28536 1.30534 1.39582 1.97018 2.35574 2.83227 2.87789 2.95351 3.12198 3.19415 3.33643 3.60589 3.76000 3.88397 3.95603 4.07239 4.08919 4.22046 4.25228 4.32457 4.37274 4.42694 4.49166 4.51977 4.58762 4.66964 4.67823 4.74456 4.75162 4.76991 4.78150 4.90050 4.95940 4.99697 5.05219 5.15723 5.18964 5.23214 5.25046 5.39772 5.43000 5.48277 5.60005 5.79638 5.89783 6.04086 6.15578 6.17925 6.30547 6.33352 6.54705 6.68004 6.92109 7.42931 7.52155 8.88687 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009045 B = 0.004073 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.911463 B = 6872.958073 C = 8292.390821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C 0.235 3.765 4 H 0.001 0.999 5 C -0.541 4.541 6 H 0.040 0.960 7 C 0.027 3.973 8 N -0.909 5.909 9 Si 0.936 3.064 10 H -0.285 1.285 11 H -0.279 1.279 12 H -0.272 1.272 13 N -0.504 5.504 14 C 0.021 3.979 15 C 0.067 3.933 16 O -0.394 6.394 17 C 0.089 3.911 18 C 0.126 3.874 19 H 0.040 0.960 20 C 0.379 3.621 21 N -0.546 5.546 22 C 0.160 3.840 23 C -0.296 4.296 24 C 0.417 3.583 25 N -0.712 5.712 26 C 0.160 3.840 27 C -0.179 4.179 28 C -0.188 4.188 29 C -0.150 4.150 30 N -0.599 5.599 31 H 0.046 0.954 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.259 0.741 37 H 0.020 0.980 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.195 0.805 44 H 0.168 0.832 45 H 0.404 0.596 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.110 0.890 49 H 0.093 0.907 50 H 0.097 0.903 51 H 0.110 0.890 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 14.504 1.492 15.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.148 4.148 3 C 0.128 3.872 4 H 0.019 0.981 5 C -0.580 4.580 6 H 0.058 0.942 7 C -0.173 4.173 8 N -0.549 5.549 9 Si 0.763 3.237 10 H -0.212 1.212 11 H -0.204 1.204 12 H -0.197 1.197 13 N -0.229 5.229 14 C -0.107 4.107 15 C -0.009 4.009 16 O -0.313 6.313 17 C 0.011 3.989 18 C 0.014 3.986 19 H 0.058 0.942 20 C 0.109 3.891 21 N -0.265 5.265 22 C -0.003 4.003 23 C -0.323 4.323 24 C 0.173 3.827 25 N -0.344 5.344 26 C 0.037 3.963 27 C -0.198 4.198 28 C -0.225 4.225 29 C -0.187 4.187 30 N -0.324 5.324 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.212 0.788 44 H 0.186 0.814 45 H 0.239 0.761 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.128 0.872 49 H 0.111 0.889 50 H 0.116 0.884 51 H 0.128 0.872 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.440 14.122 0.914 15.548 hybrid contribution 2.385 -0.007 1.585 2.864 sum -4.055 14.115 2.499 14.897 Atomic orbital electron populations 1.21499 0.95996 0.99539 1.00597 1.21506 0.94716 0.97975 1.00587 1.18894 0.91043 0.91232 0.86037 0.98115 1.21887 0.94252 1.36929 1.04977 0.94196 1.25464 1.01121 0.95081 0.95596 1.70004 1.35847 1.39277 1.09745 0.85893 0.82432 0.77288 0.78068 1.21163 1.20420 1.19676 1.62652 1.57200 0.99507 1.03561 1.22766 0.97733 0.99134 0.91115 1.22871 0.99899 0.81140 0.97030 1.87907 1.75441 1.23641 1.44293 1.22493 0.99288 0.94224 0.82870 1.20683 0.96543 0.90159 0.91183 0.94228 1.22183 0.85673 0.88396 0.92839 1.68266 1.13662 1.24702 1.19848 1.23535 1.01356 0.87521 0.87856 1.22352 0.93601 1.09093 1.07291 1.18824 0.89284 0.86933 0.87680 1.44552 1.11806 1.47104 1.30965 1.21098 0.96009 0.93436 0.85775 1.22365 1.01103 1.04032 0.92250 1.23170 1.01496 1.00168 0.97642 1.23067 1.02052 0.94415 0.99186 1.67612 1.40560 1.13972 1.10252 0.93468 0.95639 0.92228 0.94251 0.92169 0.93184 0.96162 0.89096 0.86311 0.91272 0.91350 0.88486 0.78816 0.81428 0.76083 0.89759 0.91760 0.87172 0.88892 0.88423 0.87215 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.80 71.98 0.71 -4.19 16 2 C -0.11 -5.31 4.94 30.59 0.15 -5.16 16 3 C 0.24 12.05 1.49 44.17 0.07 12.12 16 4 H 0.00 0.06 6.78 -2.38 -0.02 0.04 16 5 C -0.54 -30.52 7.10 25.60 0.18 -30.33 16 6 H 0.04 2.33 5.79 -2.91 -0.02 2.32 16 7 C 0.03 1.54 5.29 84.65 0.45 1.99 16 8 N -0.91 -53.50 11.29 21.45 0.24 -53.26 16 9 Si 0.94 45.84 29.54 68.60 2.03 47.87 16 10 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 13 N -0.50 -22.09 3.83 -853.68 -3.27 -25.35 16 14 C 0.02 0.82 4.95 86.32 0.43 1.24 16 15 C 0.07 2.09 7.01 72.02 0.50 2.60 16 16 O -0.39 -13.86 10.83 -148.98 -1.61 -15.48 16 17 C 0.09 3.19 6.27 72.01 0.45 3.64 16 18 C 0.13 5.42 2.03 44.18 0.09 5.51 16 19 H 0.04 2.00 6.53 -2.39 -0.02 1.98 16 20 C 0.38 16.16 5.09 138.76 0.71 16.87 16 21 N -0.55 -21.48 9.77 -188.10 -1.84 -23.32 16 22 C 0.16 5.01 11.29 84.56 0.95 5.97 16 23 C -0.30 -8.63 9.40 22.58 0.21 -8.42 16 24 C 0.42 14.40 7.71 133.16 1.03 15.43 16 25 N -0.71 -19.43 5.71 -344.60 -1.97 -21.40 16 26 C 0.16 3.01 5.21 86.38 0.45 3.46 16 27 C -0.18 -2.84 5.84 -10.79 -0.06 -2.90 16 28 C -0.19 -2.89 10.18 30.62 0.31 -2.58 16 29 C -0.15 -1.74 10.26 30.62 0.31 -1.43 16 30 N -0.60 -25.29 10.35 -185.44 -1.92 -27.21 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 2.32 7.75 -2.38 -0.02 2.30 16 34 H 0.04 1.82 6.02 -2.39 -0.01 1.81 16 35 H 0.06 3.33 5.95 -2.39 -0.01 3.31 16 36 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.02 0.90 6.78 -2.38 -0.02 0.88 16 38 H 0.09 3.41 6.00 -2.39 -0.01 3.40 16 39 H 0.12 2.99 8.14 -2.38 -0.02 2.97 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.10 3.19 8.14 -2.38 -0.02 3.18 16 43 H 0.20 4.39 8.06 -2.91 -0.02 4.37 16 44 H 0.17 3.49 6.87 -2.91 -0.02 3.47 16 45 H 0.40 11.19 8.53 -92.71 -0.79 10.40 16 46 H 0.08 1.31 7.98 -2.38 -0.02 1.29 16 47 H 0.06 1.24 7.71 -2.39 -0.02 1.22 16 48 H 0.11 1.77 8.04 -2.38 -0.02 1.75 16 49 H 0.09 1.52 8.03 -2.39 -0.02 1.50 16 50 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -70.73 404.89 -1.26 -71.99 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.14 Total: 32.33 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 6.94 Total: 13.82 kcal Atomic # 7 Polarization: -141.79 SS G_CDS: -8.75 Total: -150.54 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -1.61 Total: -15.48 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -70.73 -1.26 -71.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167706.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.040 kcal (2) G-P(sol) polarization free energy of solvation -70.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds