Wall clock time and date at job start Wed Apr 1 2020 03:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47329 * 2 1 4 4 H 1.08998 * 109.46765 * 53.60960 * 3 2 1 5 5 C 1.50700 * 109.47164 * 173.61295 * 3 2 1 6 6 H 1.07996 * 119.99971 * 116.78184 * 5 3 2 7 7 C 1.37875 * 119.99907 * 296.79157 * 5 3 2 8 8 N 1.31513 * 119.99992 * 171.53293 * 7 5 3 9 9 Si 1.86806 * 119.99916 * 351.52566 * 7 5 3 10 10 H 1.48500 * 109.47055 * 264.22394 * 9 7 5 11 11 H 1.48494 * 109.46875 * 24.22566 * 9 7 5 12 12 H 1.48504 * 109.46884 * 144.22393 * 9 7 5 13 13 N 1.46899 * 109.47028 * 293.61603 * 3 2 1 14 14 C 1.47018 * 111.00031 * 321.32295 * 13 3 2 15 15 C 1.53096 * 109.25605 * 182.39790 * 14 13 3 16 16 O 1.43016 * 109.25845 * 303.14645 * 15 14 13 17 17 C 1.43019 * 113.73548 * 58.67528 * 16 15 14 18 18 C 1.47007 * 111.00491 * 84.96271 * 13 3 2 19 19 H 1.09007 * 109.50538 * 297.58195 * 18 13 3 20 20 C 1.50699 * 109.50756 * 57.66705 * 18 13 3 21 21 N 1.31789 * 119.08070 * 48.82030 * 20 18 13 22 22 C 1.32545 * 121.00947 * 179.97438 * 21 20 18 23 23 C 1.38122 * 119.20121 * 359.97438 * 22 21 20 24 24 C 1.39621 * 118.32927 * 0.02562 * 23 22 21 25 25 N 1.38550 * 120.53082 * 179.97438 * 24 23 22 26 26 C 1.46502 * 119.99508 * 359.97438 * 25 24 23 27 27 C 1.53003 * 109.46630 * 179.97438 * 26 25 24 28 28 C 1.53009 * 117.49876 * 243.74777 * 27 26 25 29 29 C 1.53000 * 117.49473 * 175.08844 * 27 26 25 30 30 N 1.31750 * 119.08674 * 228.54815 * 20 18 13 31 31 H 1.08993 * 109.47652 * 191.78135 * 1 2 3 32 32 H 1.09008 * 109.46964 * 311.78406 * 1 2 3 33 33 H 1.09003 * 109.46959 * 71.77931 * 1 2 3 34 34 H 1.09007 * 109.46889 * 240.00045 * 2 1 3 35 35 H 1.08997 * 109.46833 * 120.00447 * 2 1 3 36 36 H 0.96999 * 119.99998 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.50557 * 302.32879 * 14 13 3 38 38 H 1.09001 * 109.50635 * 62.45977 * 14 13 3 39 39 H 1.09007 * 109.50467 * 183.22097 * 15 14 13 40 40 H 1.09000 * 109.54607 * 63.10946 * 15 14 13 41 41 H 1.08997 * 109.50525 * 181.39114 * 17 16 15 42 42 H 1.09004 * 109.54061 * 61.28340 * 17 16 15 43 43 H 1.08005 * 120.40191 * 179.97438 * 22 21 20 44 44 H 1.08001 * 120.83601 * 180.02562 * 23 22 21 45 45 H 0.96996 * 119.99938 * 179.97438 * 25 24 23 46 46 H 1.08994 * 109.47641 * 300.00253 * 26 25 24 47 47 H 1.09001 * 109.47341 * 60.00618 * 26 25 24 48 48 H 1.08996 * 115.55102 * 29.41902 * 27 26 25 49 49 H 1.08993 * 117.49716 * 0.02562 * 28 27 26 50 50 H 1.08992 * 117.49424 * 145.02436 * 28 27 26 51 51 H 1.09004 * 117.49880 * 214.97539 * 29 27 26 52 52 H 1.08997 * 117.50174 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5864 1.9882 0.8273 5 6 3.5388 1.4454 0.1581 6 1 4.1642 1.8366 -0.6307 7 6 4.1115 0.9484 1.3096 8 7 5.4157 0.7959 1.3824 9 14 3.0348 0.4918 2.7663 10 1 2.9878 1.6273 3.7222 11 1 1.6613 0.1880 2.2906 12 1 3.5996 -0.7027 3.4440 13 7 1.6802 2.0891 -1.2690 14 6 1.8204 1.1543 -2.3950 15 6 1.4942 1.8840 -3.7007 16 8 0.1776 2.4362 -3.6162 17 6 0.0059 3.3517 -2.5309 18 6 0.3171 2.6369 -1.2133 19 1 -0.3951 1.8258 -1.0615 20 6 0.2147 3.6166 -0.0729 21 7 1.1355 4.5509 0.0537 22 6 1.0826 5.4324 1.0420 23 6 0.0434 5.3657 1.9495 24 6 -0.9152 4.3638 1.7866 25 7 -1.9764 4.2546 2.6707 26 6 -2.0988 5.1946 3.7876 27 6 -3.3480 4.8566 4.6039 28 6 -4.4642 5.9021 4.6530 29 6 -3.5914 5.6552 5.8861 30 7 -0.7959 3.5187 0.7668 31 1 -0.3634 -1.0059 0.2098 32 1 -0.3633 0.6848 0.7664 33 1 -0.3633 0.3213 -0.9762 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 5.8186 0.4466 2.1927 37 1 2.8437 0.7808 -2.4327 38 1 1.1322 0.3194 -2.2628 39 1 1.5411 1.1807 -4.5322 40 1 2.2155 2.6854 -3.8606 41 1 -1.0234 3.7099 -2.5164 42 1 0.6835 4.1963 -2.6556 43 1 1.8427 6.1938 1.1367 44 1 -0.0258 6.0709 2.7646 45 1 -2.6382 3.5558 2.5500 46 1 -1.2172 5.1197 4.4240 47 1 -2.1821 6.2102 3.4005 48 1 -3.6414 3.8069 4.6014 49 1 -4.3087 6.8304 4.1033 50 1 -5.4918 5.5400 4.6831 51 1 -4.0454 5.1309 6.7270 52 1 -2.8615 6.4210 6.1483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:28 Heat of formation + Delta-G solvation = 69.917877 kcal Electronic energy + Delta-G solvation = -32294.540160 eV Core-core repulsion = 28296.443909 eV Total energy + Delta-G solvation = -3998.096251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.88478 -39.31326 -38.26346 -36.41607 -35.67981 -33.16212 -32.49853 -31.79364 -31.13508 -29.60685 -28.30202 -27.05217 -25.55798 -24.67180 -23.40767 -22.81820 -22.53025 -21.95672 -21.09074 -20.38959 -19.19860 -17.70409 -17.28595 -16.78150 -16.20759 -15.98737 -15.63462 -15.28805 -15.06968 -15.02395 -14.70082 -14.61425 -14.29520 -14.15163 -13.88948 -13.70004 -13.51094 -13.30202 -12.81004 -12.22674 -12.17484 -11.98333 -11.95962 -11.80887 -11.64808 -11.42855 -11.20034 -11.00238 -10.87744 -10.83091 -10.78894 -10.48567 -10.44630 -10.29726 -10.05120 -9.86746 -9.63883 -9.27231 -9.09791 -8.95326 -8.76258 -8.42824 -8.05151 -7.22684 -6.02431 -3.96002 1.32922 1.72979 2.84355 3.26204 3.35683 3.37315 3.40054 4.09624 4.15368 4.19807 4.39620 4.44484 4.46265 4.53458 4.56831 4.78042 4.88695 5.00226 5.15649 5.22173 5.24975 5.32913 5.37745 5.42821 5.46334 5.52671 5.56882 5.64825 5.67159 5.70746 5.72044 5.81110 5.88823 5.90324 5.96191 6.07816 6.08653 6.15784 6.40809 6.43724 6.48789 6.56856 6.68594 6.82225 6.90337 6.97040 7.19638 7.34238 7.46162 7.68694 7.72125 7.90857 8.04509 8.67730 8.73484 9.11353 9.62500 11.11012 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009657 B = 0.004053 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.823206 B = 6907.356047 C = 8477.472229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.166 4.166 3 C 0.198 3.802 4 H 0.026 0.974 5 C -0.488 4.488 6 H 0.082 0.918 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.847 3.153 10 H -0.286 1.286 11 H -0.244 1.244 12 H -0.287 1.287 13 N -0.494 5.494 14 C 0.022 3.978 15 C 0.060 3.940 16 O -0.387 6.387 17 C 0.079 3.921 18 C 0.096 3.904 19 H 0.084 0.916 20 C 0.383 3.617 21 N -0.512 5.512 22 C 0.177 3.823 23 C -0.304 4.304 24 C 0.432 3.568 25 N -0.716 5.716 26 C 0.160 3.840 27 C -0.169 4.169 28 C -0.176 4.176 29 C -0.169 4.169 30 N -0.577 5.577 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.261 0.739 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.163 0.837 44 H 0.134 0.866 45 H 0.405 0.595 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.111 0.889 49 H 0.097 0.903 50 H 0.096 0.904 51 H 0.098 0.902 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.675 9.215 2.673 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.205 4.205 3 C 0.090 3.910 4 H 0.044 0.956 5 C -0.526 4.526 6 H 0.100 0.900 7 C -0.128 4.128 8 N -0.537 5.537 9 Si 0.675 3.325 10 H -0.213 1.213 11 H -0.168 1.168 12 H -0.213 1.213 13 N -0.219 5.219 14 C -0.106 4.106 15 C -0.017 4.017 16 O -0.306 6.306 17 C 0.001 3.999 18 C -0.014 4.014 19 H 0.102 0.898 20 C 0.114 3.886 21 N -0.228 5.228 22 C 0.014 3.986 23 C -0.331 4.331 24 C 0.189 3.811 25 N -0.351 5.351 26 C 0.035 3.965 27 C -0.188 4.188 28 C -0.213 4.213 29 C -0.207 4.207 30 N -0.301 5.301 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.180 0.820 44 H 0.152 0.848 45 H 0.241 0.759 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.129 0.871 49 H 0.115 0.885 50 H 0.114 0.886 51 H 0.116 0.884 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.257 9.031 1.992 19.579 hybrid contribution -1.054 -0.610 2.377 2.671 sum -18.311 8.421 4.369 20.623 Atomic orbital electron populations 1.22170 0.98242 1.00262 1.00928 1.22845 0.93287 1.02057 1.02318 1.19679 0.97158 0.87866 0.86273 0.95638 1.20875 0.88725 1.39302 1.03712 0.89955 1.24823 0.94562 0.95338 0.98029 1.69904 1.09693 1.46367 1.27756 0.87573 0.82956 0.78120 0.83831 1.21285 1.16834 1.21340 1.62424 1.18841 1.35746 1.04921 1.22818 1.03040 0.94288 0.90463 1.22790 0.83987 0.97541 0.97381 1.87912 1.31773 1.61679 1.49209 1.22526 1.01133 0.91849 0.84408 1.21372 0.94488 0.94858 0.90703 0.89836 1.22375 0.83581 0.90963 0.91633 1.68345 1.26245 1.04841 1.23402 1.22993 0.93830 0.94089 0.87728 1.22089 1.00253 1.04440 1.06365 1.18379 0.86648 0.88812 0.87283 1.44298 1.26790 1.35908 1.28083 1.20920 0.96533 0.92425 0.86593 1.22406 0.97282 0.98252 1.00857 1.23103 0.96151 1.00295 1.01713 1.22975 1.03200 1.02877 0.91646 1.67648 1.27579 1.28617 1.06230 0.94225 0.92979 0.92776 0.91819 0.91765 0.92880 0.88501 0.93958 0.89065 0.92219 0.89540 0.91564 0.81993 0.84776 0.75850 0.91314 0.91594 0.87061 0.88455 0.88594 0.88374 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 8.19 37.16 0.30 -2.73 16 2 C -0.17 -3.66 3.98 -26.73 -0.11 -3.77 16 3 C 0.20 4.72 1.30 -68.86 -0.09 4.63 16 4 H 0.03 0.67 5.30 -51.93 -0.28 0.39 16 5 C -0.49 -13.74 8.89 -34.44 -0.31 -14.05 16 6 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 7 C 0.07 2.13 5.40 -17.82 -0.10 2.04 16 8 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 9 Si 0.85 21.68 25.71 -169.99 -4.37 17.31 16 10 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.24 -5.93 5.00 56.52 0.28 -5.65 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 13 N -0.49 -10.42 4.23 -221.18 -0.94 -11.36 16 14 C 0.02 0.41 4.27 -3.71 -0.02 0.39 16 15 C 0.06 0.95 7.01 37.21 0.26 1.21 16 16 O -0.39 -6.48 10.83 -35.23 -0.38 -6.87 16 17 C 0.08 1.32 6.27 37.21 0.23 1.55 16 18 C 0.10 1.82 2.00 -68.76 -0.14 1.68 16 19 H 0.08 1.60 4.23 -51.93 -0.22 1.38 16 20 C 0.38 7.38 4.66 -157.24 -0.73 6.64 16 21 N -0.51 -9.97 10.17 -10.81 -0.11 -10.08 16 22 C 0.18 2.86 11.29 -17.29 -0.20 2.66 16 23 C -0.30 -4.36 9.40 -39.11 -0.37 -4.73 16 24 C 0.43 6.68 7.71 -154.77 -1.19 5.49 16 25 N -0.72 -8.46 5.71 -60.27 -0.34 -8.80 16 26 C 0.16 1.40 5.21 -4.04 -0.02 1.38 16 27 C -0.17 -1.22 5.85 -90.61 -0.53 -1.75 16 28 C -0.18 -1.08 10.18 -26.69 -0.27 -1.35 16 29 C -0.17 -1.02 10.25 -26.69 -0.27 -1.30 16 30 N -0.58 -10.34 10.35 -9.97 -0.10 -10.45 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 1.04 7.99 -51.92 -0.41 0.63 16 33 H 0.05 0.98 4.66 -51.93 -0.24 0.74 16 34 H 0.06 1.36 6.02 -51.92 -0.31 1.04 16 35 H 0.06 1.52 4.12 -51.93 -0.21 1.31 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.10 1.92 7.80 -51.93 -0.40 1.51 16 38 H 0.04 0.77 5.10 -51.93 -0.26 0.51 16 39 H 0.09 1.20 8.14 -51.92 -0.42 0.77 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.16 2.09 8.06 -52.48 -0.42 1.67 16 44 H 0.13 1.48 6.87 -52.49 -0.36 1.12 16 45 H 0.41 4.51 8.53 -40.82 -0.35 4.16 16 46 H 0.07 0.63 7.97 -51.93 -0.41 0.22 16 47 H 0.07 0.53 7.70 -51.93 -0.40 0.13 16 48 H 0.11 0.81 8.04 -51.93 -0.42 0.40 16 49 H 0.10 0.57 8.03 -51.93 -0.42 0.15 16 50 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 393.94 15.07 5.94 5.94 Total: -1.00 -33.27 393.94 -11.26 -44.53 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.19 Total: 8.61 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -3.54 Total: -1.99 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -0.72 Total: -67.53 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.38 Total: -6.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.37 Total: 17.31 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.27 -11.26 -44.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.448 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds