Wall clock time and date at job start Wed Apr 1 2020 03:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47287 * 2 1 4 4 H 1.08992 * 109.47068 * 176.97281 * 3 2 1 5 5 C 1.50697 * 109.46989 * 56.97091 * 3 2 1 6 6 H 1.07999 * 120.00384 * 240.00460 * 5 3 2 7 7 C 1.37875 * 120.00201 * 60.00138 * 5 3 2 8 8 N 1.31518 * 120.00064 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00476 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47039 * 89.99884 * 9 7 5 11 11 H 1.48500 * 109.47599 * 209.99995 * 9 7 5 12 12 H 1.48500 * 109.46983 * 330.00395 * 9 7 5 13 13 N 1.46900 * 109.47018 * 296.97400 * 3 2 1 14 14 C 1.46940 * 110.99939 * 295.68981 * 13 3 2 15 15 C 1.53628 * 109.64377 * 164.25009 * 14 13 3 16 16 C 1.50420 * 107.73740 * 48.73411 * 15 14 13 17 17 C 1.40220 * 130.32607 * 164.30907 * 16 15 14 18 18 C 1.47710 * 126.69545 * 0.29967 * 17 16 15 19 19 O 1.21571 * 119.99600 * 359.97327 * 18 17 16 20 20 N 1.34770 * 119.99833 * 179.97438 * 18 17 16 21 21 C 1.47017 * 125.65250 * 359.69021 * 20 18 17 22 22 C 1.54311 * 107.28065 * 180.96990 * 21 20 18 23 23 C 1.55157 * 102.86092 * 22.52579 * 22 21 20 24 24 C 1.47421 * 125.64735 * 179.97438 * 20 18 17 25 25 N 1.32287 * 106.60617 * 180.29638 * 17 16 15 26 26 N 1.28929 * 110.16885 * 359.97438 * 25 17 16 27 27 C 1.46503 * 124.98058 * 179.97438 * 26 25 17 28 28 C 1.34106 * 110.03263 * 359.89364 * 26 25 17 29 29 C 1.47330 * 111.00092 * 170.91504 * 13 3 2 30 30 H 1.09007 * 109.46493 * 54.83415 * 1 2 3 31 31 H 1.08991 * 109.47572 * 294.83205 * 1 2 3 32 32 H 1.09004 * 109.47240 * 174.82516 * 1 2 3 33 33 H 1.09003 * 109.46981 * 119.99878 * 2 1 3 34 34 H 1.09002 * 109.47567 * 239.99678 * 2 1 3 35 35 H 0.96997 * 120.00282 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.44347 * 284.30796 * 14 13 3 37 37 H 1.09009 * 109.44197 * 44.20089 * 14 13 3 38 38 H 1.09006 * 109.81286 * 289.17335 * 15 14 13 39 39 H 1.08993 * 109.85335 * 168.31837 * 15 14 13 40 40 H 1.09003 * 109.88171 * 300.51364 * 21 20 18 41 41 H 1.09001 * 109.88598 * 61.67464 * 21 20 18 42 42 H 1.09001 * 110.92211 * 264.10949 * 22 21 20 43 43 H 1.08995 * 110.59226 * 140.78475 * 22 21 20 44 44 H 1.09002 * 111.00406 * 206.23058 * 23 22 21 45 45 H 1.08996 * 111.03901 * 82.39226 * 23 22 21 46 46 H 1.08998 * 110.36950 * 274.67408 * 24 20 18 47 47 H 1.09007 * 110.36968 * 36.88322 * 24 20 18 48 48 H 1.08999 * 109.46891 * 269.95481 * 27 26 25 49 49 H 1.09003 * 109.47349 * 29.95448 * 27 26 25 50 50 H 1.09000 * 109.47036 * 149.95215 * 27 26 25 51 51 H 1.08998 * 109.71503 * 295.51337 * 29 13 3 52 52 H 1.08996 * 109.71152 * 56.10524 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4430 0.0543 5 6 1.4774 2.1743 1.1912 6 1 0.8625 3.0502 1.0459 7 6 1.7474 1.7255 2.4666 8 7 2.4957 0.6585 2.6436 9 14 1.0506 2.6329 3.9432 10 1 -0.2766 2.0651 4.2920 11 1 1.9725 2.4817 5.0975 12 1 0.9016 4.0732 3.6140 13 7 1.6110 2.1136 -1.2343 14 6 2.2242 1.4882 -2.4142 15 6 1.4763 1.9311 -3.6809 16 6 1.3362 3.4280 -3.6306 17 6 1.0082 4.3431 -4.6411 18 6 0.7054 4.0288 -6.0522 19 8 0.7275 2.8756 -6.4363 20 7 0.4046 5.0205 -6.9138 21 6 0.3361 6.4514 -6.5833 22 6 -0.0648 7.2007 -7.8714 23 6 -0.7585 6.0962 -8.7118 24 6 0.0842 4.8496 -8.3426 25 7 1.0230 5.5429 -4.0839 26 7 1.3268 5.4490 -2.8345 27 6 1.4355 6.5798 -1.9093 28 6 1.5269 4.1644 -2.5055 29 6 1.8948 3.5581 -1.1760 30 1 -0.3632 0.5919 -0.8402 31 1 -0.3634 0.4315 0.9325 32 1 -0.3634 -1.0235 -0.0927 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 2.6860 0.3430 3.5409 36 1 3.2686 1.7923 -2.4844 37 1 2.1682 0.4036 -2.3203 38 1 0.4896 1.4686 -3.7081 39 1 2.0438 1.6429 -4.5657 40 1 -0.4117 6.6173 -5.8078 41 1 1.3107 6.8002 -6.2420 42 1 0.8149 7.5836 -8.3887 43 1 -0.7617 8.0074 -7.6445 44 1 -0.6878 6.3138 -9.7775 45 1 -1.7979 5.9691 -8.4092 46 1 0.9982 4.8201 -8.9356 47 1 -0.4955 3.9391 -8.4951 48 1 2.4585 6.9561 -1.9142 49 1 0.7555 7.3721 -2.2223 50 1 1.1735 6.2526 -0.9032 51 1 1.3014 4.0178 -0.3856 52 1 2.9550 3.7169 -0.9793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167849.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:15 Heat of formation + Delta-G solvation = 59.726407 kcal Electronic energy + Delta-G solvation = -31828.615259 eV Core-core repulsion = 27830.077072 eV Total energy + Delta-G solvation = -3998.538187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.56105 -39.74598 -37.76394 -37.29448 -34.28033 -33.47558 -31.85703 -31.40191 -30.30419 -29.68293 -29.23037 -27.33603 -26.22340 -24.75608 -24.17416 -22.56503 -22.39172 -21.67479 -21.23708 -19.60327 -18.87654 -18.44720 -16.83965 -16.57719 -16.41580 -16.29319 -15.97752 -15.22970 -15.08509 -14.46829 -14.40075 -13.88584 -13.73368 -13.61851 -13.52428 -13.34630 -13.11938 -12.91567 -12.61117 -12.52462 -12.35931 -12.24695 -12.14540 -11.94163 -11.58569 -11.48196 -11.41156 -11.17993 -11.01230 -10.95956 -10.77344 -10.63902 -10.43405 -10.26306 -10.00522 -9.90277 -9.63033 -9.39764 -8.92968 -8.79684 -8.67324 -8.46679 -8.16149 -7.19605 -6.06340 -4.10831 1.73283 2.42264 2.57198 2.99465 3.25142 3.32678 3.33133 3.58612 4.21400 4.33999 4.37255 4.50566 4.65793 4.78724 4.92878 5.04479 5.08278 5.09869 5.13705 5.25855 5.33935 5.38007 5.44279 5.49852 5.53993 5.62680 5.70983 5.76806 5.77376 5.90602 5.96798 6.02348 6.13344 6.28866 6.37817 6.41697 6.53068 6.58053 6.63906 6.69941 6.78888 6.85047 7.01378 7.20432 7.29563 7.42371 7.44983 7.62459 7.75905 7.77885 8.02262 8.09613 8.28505 8.32264 8.52776 8.93312 9.53460 11.00136 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.002823 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.796252 B = 9917.881677 C =10931.295040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.219 3.781 4 H 0.000 1.000 5 C -0.505 4.505 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.526 5.526 14 C 0.049 3.951 15 C -0.032 4.032 16 C -0.137 4.137 17 C -0.016 4.016 18 C 0.624 3.376 19 O -0.530 6.530 20 N -0.614 5.614 21 C 0.112 3.888 22 C -0.134 4.134 23 C -0.134 4.134 24 C 0.107 3.893 25 N -0.277 5.277 26 N -0.272 5.272 27 C 0.087 3.913 28 C 0.022 3.978 29 C 0.141 3.859 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.014 0.986 33 H 0.089 0.911 34 H 0.017 0.983 35 H 0.261 0.739 36 H 0.023 0.977 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.099 0.901 51 H 0.098 0.902 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.914 13.367 -16.515 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.251 5.251 14 C -0.079 4.079 15 C -0.071 4.071 16 C -0.147 4.147 17 C -0.174 4.174 18 C 0.412 3.588 19 O -0.404 6.404 20 N -0.350 5.350 21 C -0.011 4.011 22 C -0.172 4.172 23 C -0.172 4.172 24 C -0.016 4.016 25 N -0.114 5.114 26 N -0.059 5.059 27 C -0.054 4.054 28 C -0.104 4.104 29 C 0.012 3.988 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.108 0.892 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.111 0.889 50 H 0.117 0.883 51 H 0.116 0.884 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.448 13.739 -16.696 21.895 hybrid contribution 0.626 0.012 1.248 1.396 sum -2.822 13.752 -15.448 20.873 Atomic orbital electron populations 1.21446 0.97173 0.97306 1.01801 1.21545 0.95441 0.97691 0.99886 1.19282 0.93425 0.91412 0.84536 0.98238 1.21063 1.31363 1.12118 0.89788 0.92048 1.24884 0.95127 0.95045 0.98771 1.69882 1.37641 1.23233 1.21939 0.86598 0.78941 0.79993 0.82441 1.20651 1.21374 1.20068 1.61966 1.59368 0.99875 1.03917 1.22243 0.94930 1.00161 0.90589 1.20034 1.01328 0.88442 0.97291 1.19867 1.07005 0.97247 0.90593 1.21149 1.11162 0.90356 0.94692 1.16539 0.76198 0.83645 0.82462 1.90781 1.52776 1.19203 1.77654 1.48264 1.69567 1.07323 1.09800 1.21993 1.02363 0.79694 0.97016 1.22688 1.00954 0.97850 0.95747 1.22795 0.99569 0.94412 1.00422 1.22212 0.99053 0.99086 0.81232 1.73813 1.20669 1.23985 0.92921 1.44892 1.47878 1.06617 1.06523 1.22156 1.04038 0.87008 0.92192 1.21569 1.05862 0.83675 0.99305 1.20454 0.98863 0.90493 0.89011 0.93429 0.92739 0.96688 0.89234 0.96459 0.92922 0.95889 0.89964 0.90443 0.90716 0.90890 0.91038 0.90655 0.90089 0.89858 0.90549 0.91478 0.90250 0.89885 0.88880 0.88256 0.88409 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.45 37.16 0.35 -2.29 16 2 C -0.11 -2.49 5.32 -26.73 -0.14 -2.64 16 3 C 0.22 5.18 1.78 -68.86 -0.12 5.06 16 4 H 0.00 0.00 8.13 -51.93 -0.42 -0.42 16 5 C -0.50 -12.69 6.65 -34.44 -0.23 -12.92 16 6 H 0.06 1.53 6.07 -52.49 -0.32 1.21 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 8 N -0.89 -24.09 11.35 55.43 0.63 -23.46 16 9 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.53 -10.90 3.75 -228.67 -0.86 -11.75 16 14 C 0.05 0.93 5.41 -3.48 -0.02 0.91 16 15 C -0.03 -0.59 5.79 -27.69 -0.16 -0.75 16 16 C -0.14 -2.52 6.05 -104.88 -0.64 -3.15 16 17 C -0.02 -0.28 6.96 -83.06 -0.58 -0.86 16 18 C 0.62 10.47 7.86 -12.39 -0.10 10.37 16 19 O -0.53 -10.14 16.20 5.30 0.09 -10.06 16 20 N -0.61 -8.04 3.33 -171.68 -0.57 -8.61 16 21 C 0.11 1.16 5.54 -3.07 -0.02 1.15 16 22 C -0.13 -0.93 6.95 -24.90 -0.17 -1.10 16 23 C -0.13 -0.93 7.08 -24.57 -0.17 -1.10 16 24 C 0.11 1.07 6.91 -2.52 -0.02 1.06 16 25 N -0.28 -4.28 9.57 33.24 0.32 -3.96 16 26 N -0.27 -4.05 3.69 -63.96 -0.24 -4.28 16 27 C 0.09 0.86 11.19 59.85 0.67 1.53 16 28 C 0.02 0.39 6.79 -82.48 -0.56 -0.17 16 29 C 0.14 2.65 4.93 -4.75 -0.02 2.62 16 30 H 0.05 1.03 7.55 -51.93 -0.39 0.64 16 31 H 0.05 1.29 7.33 -51.93 -0.38 0.91 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 2.31 6.16 -51.93 -0.32 1.99 16 34 H 0.02 0.37 6.10 -51.93 -0.32 0.05 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 37 H 0.08 1.55 5.80 -51.92 -0.30 1.25 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.07 1.32 7.79 -51.93 -0.40 0.91 16 40 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 41 H 0.07 0.78 7.76 -51.93 -0.40 0.38 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.86 8.03 -51.92 -0.42 0.44 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.10 0.93 7.61 -51.93 -0.40 0.54 16 51 H 0.10 1.86 5.86 -51.93 -0.30 1.55 16 52 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -30.68 398.39 -10.23 -40.90 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.56 Total: 0.76 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.02 Total: -0.73 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.72 Total: -52.07 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.68 -10.23 -40.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167849.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.630 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds