Wall clock time and date at job start Wed Apr 1 2020 03:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47287 * 2 1 4 4 H 1.08992 * 109.47068 * 176.97281 * 3 2 1 5 5 C 1.50697 * 109.46989 * 56.97091 * 3 2 1 6 6 H 1.07999 * 120.00384 * 240.00460 * 5 3 2 7 7 C 1.37875 * 120.00201 * 60.00138 * 5 3 2 8 8 N 1.31518 * 120.00064 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00476 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47039 * 89.99884 * 9 7 5 11 11 H 1.48500 * 109.47599 * 209.99995 * 9 7 5 12 12 H 1.48500 * 109.46983 * 330.00395 * 9 7 5 13 13 N 1.46900 * 109.47018 * 296.97400 * 3 2 1 14 14 C 1.46940 * 110.99939 * 295.68981 * 13 3 2 15 15 C 1.53628 * 109.64377 * 164.25009 * 14 13 3 16 16 C 1.50420 * 107.73740 * 48.73411 * 15 14 13 17 17 C 1.40220 * 130.32607 * 164.30907 * 16 15 14 18 18 C 1.47710 * 126.69545 * 0.29967 * 17 16 15 19 19 O 1.21571 * 119.99600 * 359.97327 * 18 17 16 20 20 N 1.34770 * 119.99833 * 179.97438 * 18 17 16 21 21 C 1.47017 * 125.65250 * 359.69021 * 20 18 17 22 22 C 1.54311 * 107.28065 * 180.96990 * 21 20 18 23 23 C 1.55157 * 102.86092 * 22.52579 * 22 21 20 24 24 C 1.47421 * 125.64735 * 179.97438 * 20 18 17 25 25 N 1.32287 * 106.60617 * 180.29638 * 17 16 15 26 26 N 1.28929 * 110.16885 * 359.97438 * 25 17 16 27 27 C 1.46503 * 124.98058 * 179.97438 * 26 25 17 28 28 C 1.34106 * 110.03263 * 359.89364 * 26 25 17 29 29 C 1.47330 * 111.00092 * 170.91504 * 13 3 2 30 30 H 1.09007 * 109.46493 * 54.83415 * 1 2 3 31 31 H 1.08991 * 109.47572 * 294.83205 * 1 2 3 32 32 H 1.09004 * 109.47240 * 174.82516 * 1 2 3 33 33 H 1.09003 * 109.46981 * 119.99878 * 2 1 3 34 34 H 1.09002 * 109.47567 * 239.99678 * 2 1 3 35 35 H 0.96997 * 120.00282 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.44347 * 284.30796 * 14 13 3 37 37 H 1.09009 * 109.44197 * 44.20089 * 14 13 3 38 38 H 1.09006 * 109.81286 * 289.17335 * 15 14 13 39 39 H 1.08993 * 109.85335 * 168.31837 * 15 14 13 40 40 H 1.09003 * 109.88171 * 300.51364 * 21 20 18 41 41 H 1.09001 * 109.88598 * 61.67464 * 21 20 18 42 42 H 1.09001 * 110.92211 * 264.10949 * 22 21 20 43 43 H 1.08995 * 110.59226 * 140.78475 * 22 21 20 44 44 H 1.09002 * 111.00406 * 206.23058 * 23 22 21 45 45 H 1.08996 * 111.03901 * 82.39226 * 23 22 21 46 46 H 1.08998 * 110.36950 * 274.67408 * 24 20 18 47 47 H 1.09007 * 110.36968 * 36.88322 * 24 20 18 48 48 H 1.08999 * 109.46891 * 269.95481 * 27 26 25 49 49 H 1.09003 * 109.47349 * 29.95448 * 27 26 25 50 50 H 1.09000 * 109.47036 * 149.95215 * 27 26 25 51 51 H 1.08998 * 109.71503 * 295.51337 * 29 13 3 52 52 H 1.08996 * 109.71152 * 56.10524 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4430 0.0543 5 6 1.4774 2.1743 1.1912 6 1 0.8625 3.0502 1.0459 7 6 1.7474 1.7255 2.4666 8 7 2.4957 0.6585 2.6436 9 14 1.0506 2.6329 3.9432 10 1 -0.2766 2.0651 4.2920 11 1 1.9725 2.4817 5.0975 12 1 0.9016 4.0732 3.6140 13 7 1.6110 2.1136 -1.2343 14 6 2.2242 1.4882 -2.4142 15 6 1.4763 1.9311 -3.6809 16 6 1.3362 3.4280 -3.6306 17 6 1.0082 4.3431 -4.6411 18 6 0.7054 4.0288 -6.0522 19 8 0.7275 2.8756 -6.4363 20 7 0.4046 5.0205 -6.9138 21 6 0.3361 6.4514 -6.5833 22 6 -0.0648 7.2007 -7.8714 23 6 -0.7585 6.0962 -8.7118 24 6 0.0842 4.8496 -8.3426 25 7 1.0230 5.5429 -4.0839 26 7 1.3268 5.4490 -2.8345 27 6 1.4355 6.5798 -1.9093 28 6 1.5269 4.1644 -2.5055 29 6 1.8948 3.5581 -1.1760 30 1 -0.3632 0.5919 -0.8402 31 1 -0.3634 0.4315 0.9325 32 1 -0.3634 -1.0235 -0.0927 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 2.6860 0.3430 3.5409 36 1 3.2686 1.7923 -2.4844 37 1 2.1682 0.4036 -2.3203 38 1 0.4896 1.4686 -3.7081 39 1 2.0438 1.6429 -4.5657 40 1 -0.4117 6.6173 -5.8078 41 1 1.3107 6.8002 -6.2420 42 1 0.8149 7.5836 -8.3887 43 1 -0.7617 8.0074 -7.6445 44 1 -0.6878 6.3138 -9.7775 45 1 -1.7979 5.9691 -8.4092 46 1 0.9982 4.8201 -8.9356 47 1 -0.4955 3.9391 -8.4951 48 1 2.4585 6.9561 -1.9142 49 1 0.7555 7.3721 -2.2223 50 1 1.1735 6.2526 -0.9032 51 1 1.3014 4.0178 -0.3856 52 1 2.9550 3.7169 -0.9793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167849.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:14 Heat of formation + Delta-G solvation = 41.891194 kcal Electronic energy + Delta-G solvation = -31829.388652 eV Core-core repulsion = 27830.077072 eV Total energy + Delta-G solvation = -3999.311579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.84154 -40.80007 -39.41870 -38.32941 -35.94353 -34.76576 -33.43340 -32.65546 -31.75300 -31.16588 -30.02577 -28.54541 -27.92096 -26.37225 -25.27061 -24.25968 -23.86075 -22.71699 -21.97547 -21.18339 -20.08260 -19.94994 -18.19526 -17.98666 -17.70056 -17.51599 -17.17443 -16.83926 -16.33971 -16.11450 -15.56855 -15.39425 -15.27636 -14.93174 -14.49418 -14.35023 -14.28632 -14.05055 -13.88552 -13.87438 -13.84664 -13.55609 -13.39547 -13.24151 -12.96945 -12.88782 -12.74877 -12.39618 -12.37619 -12.21932 -12.15230 -12.05700 -11.80405 -11.70434 -11.57720 -11.50562 -11.26716 -11.16616 -10.69687 -10.45138 -10.15319 -9.73938 -9.50607 -8.91639 -8.04825 -6.14847 0.47164 1.05127 1.44984 1.47236 1.47922 1.55045 1.96721 2.29711 2.45700 3.10780 3.25127 3.30425 3.60369 3.64603 3.71606 3.96824 4.06723 4.09366 4.22782 4.32749 4.34773 4.36096 4.47011 4.49938 4.55576 4.58224 4.64115 4.66709 4.72452 4.78961 4.89693 4.92756 4.94560 4.96102 4.97509 5.02447 5.09684 5.12199 5.14536 5.29349 5.34739 5.38549 5.46952 5.47364 5.54971 5.74312 5.76998 5.80705 5.91106 6.27342 6.35771 6.39991 6.70075 6.80107 6.96691 7.08703 7.52947 9.01180 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.002823 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.796252 B = 9917.881677 C =10931.295040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C 0.227 3.773 4 H -0.035 1.035 5 C -0.507 4.507 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.530 5.530 14 C 0.055 3.945 15 C -0.021 4.021 16 C -0.161 4.161 17 C -0.034 4.034 18 C 0.613 3.387 19 O -0.567 6.567 20 N -0.612 5.612 21 C 0.107 3.893 22 C -0.123 4.123 23 C -0.123 4.123 24 C 0.096 3.904 25 N -0.256 5.256 26 N -0.263 5.263 27 C 0.074 3.926 28 C 0.013 3.987 29 C 0.149 3.851 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.259 0.741 36 H 0.021 0.979 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.104 0.896 49 H 0.118 0.882 50 H 0.105 0.895 51 H 0.096 0.904 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 16.273 -17.644 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C 0.120 3.880 4 H -0.017 1.017 5 C -0.546 4.546 6 H 0.082 0.918 7 C -0.180 4.180 8 N -0.558 5.558 9 Si 0.776 3.224 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.186 1.186 13 N -0.255 5.255 14 C -0.073 4.073 15 C -0.059 4.059 16 C -0.172 4.172 17 C -0.190 4.190 18 C 0.401 3.599 19 O -0.445 6.445 20 N -0.345 5.345 21 C -0.016 4.016 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.026 4.026 25 N -0.094 5.094 26 N -0.050 5.050 27 C -0.064 4.064 28 C -0.114 4.114 29 C 0.020 3.980 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.120 0.880 44 H 0.129 0.871 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.123 0.877 49 H 0.137 0.863 50 H 0.123 0.877 51 H 0.114 0.886 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.517 16.715 -17.852 24.869 hybrid contribution 0.977 -0.815 1.544 2.001 sum -3.540 15.900 -16.308 23.050 Atomic orbital electron populations 1.21295 0.96021 0.98419 1.00666 1.21444 0.96327 0.97350 0.99200 1.19055 0.91214 0.92003 0.85680 1.01735 1.21282 1.30861 1.12072 0.90341 0.91791 1.25577 0.95474 0.95718 1.01263 1.70020 1.38913 1.24588 1.22233 0.85675 0.77856 0.79586 0.79242 1.20823 1.21617 1.18602 1.61897 1.59411 1.01030 1.03205 1.22207 0.94833 0.99947 0.90341 1.19861 1.00580 0.88895 0.96606 1.20025 1.08092 0.97437 0.91614 1.21283 1.12007 0.90580 0.95152 1.16618 0.76551 0.83921 0.82795 1.90744 1.54849 1.20690 1.78243 1.48418 1.67587 1.07877 1.10606 1.22182 1.01961 0.78423 0.98988 1.22698 1.01990 0.97748 0.93676 1.22796 0.98783 0.92385 1.02080 1.22492 0.99992 1.00416 0.79652 1.73821 1.19609 1.22929 0.93038 1.45353 1.46097 1.06861 1.06725 1.22615 1.06205 0.86072 0.91542 1.21272 1.06854 0.84991 0.98241 1.20294 0.98552 0.89299 0.89863 0.93264 0.94713 0.94689 0.91882 0.95138 0.93162 0.96105 0.90096 0.91342 0.90612 0.91622 0.91540 0.89217 0.88021 0.87076 0.90552 0.90613 0.91543 0.87749 0.86319 0.87656 0.88610 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.45 71.98 0.68 -4.01 16 2 C -0.10 -4.96 5.32 30.60 0.16 -4.80 16 3 C 0.23 10.98 1.78 44.17 0.08 11.06 16 4 H -0.03 -1.90 8.13 -2.39 -0.02 -1.92 16 5 C -0.51 -25.67 6.65 25.60 0.17 -25.50 16 6 H 0.06 3.16 6.07 -2.91 -0.02 3.14 16 7 C 0.02 0.97 5.30 84.65 0.45 1.42 16 8 N -0.92 -50.78 11.35 21.45 0.24 -50.53 16 9 Si 0.95 41.34 29.54 68.60 2.03 43.37 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 13 N -0.53 -22.28 3.75 -877.39 -3.29 -25.57 16 14 C 0.05 2.12 5.41 86.51 0.47 2.59 16 15 C -0.02 -0.77 5.79 29.97 0.17 -0.60 16 16 C -0.16 -5.97 6.05 -20.03 -0.12 -6.09 16 17 C -0.03 -1.16 6.96 42.06 0.29 -0.86 16 18 C 0.61 20.76 7.86 86.75 0.68 21.44 16 19 O -0.57 -22.36 16.20 -3.94 -0.06 -22.42 16 20 N -0.61 -15.50 3.33 -815.34 -2.71 -18.22 16 21 C 0.11 2.00 5.54 86.73 0.48 2.48 16 22 C -0.12 -1.28 6.95 31.78 0.22 -1.05 16 23 C -0.12 -1.33 7.08 31.99 0.23 -1.10 16 24 C 0.10 1.81 6.91 86.86 0.60 2.41 16 25 N -0.26 -7.58 9.57 -48.75 -0.47 -8.05 16 26 N -0.26 -7.41 3.69 -356.27 -1.31 -8.72 16 27 C 0.07 1.27 11.19 127.77 1.43 2.70 16 28 C 0.01 0.46 6.79 41.64 0.28 0.75 16 29 C 0.15 5.60 4.93 85.47 0.42 6.02 16 30 H 0.05 2.12 7.55 -2.38 -0.02 2.10 16 31 H 0.03 1.63 7.33 -2.39 -0.02 1.62 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 3.34 6.16 -2.39 -0.01 3.33 16 34 H 0.03 1.33 6.10 -2.39 -0.01 1.31 16 35 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 37 H 0.08 3.11 5.80 -2.38 -0.01 3.09 16 38 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 39 H 0.08 2.76 7.79 -2.39 -0.02 2.75 16 40 H 0.07 1.33 7.68 -2.39 -0.02 1.32 16 41 H 0.07 1.32 7.76 -2.39 -0.02 1.30 16 42 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.11 0.65 8.14 -2.39 -0.02 0.64 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 1.43 8.03 -2.38 -0.02 1.41 16 48 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 50 H 0.10 1.73 7.61 -2.39 -0.02 1.71 16 51 H 0.10 3.59 5.86 -2.39 -0.01 3.58 16 52 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -67.88 398.39 2.04 -65.85 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.91 Total: 17.45 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 6.70 Total: 6.85 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -7.54 Total: -111.09 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.42 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -67.88 2.04 -65.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167849.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.738 kcal (2) G-P(sol) polarization free energy of solvation -67.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds