Wall clock time and date at job start Wed Apr 1 2020 03:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47551 * 2 1 4 4 H 1.09002 * 109.46792 * 50.51272 * 3 2 1 5 5 C 1.50700 * 109.47667 * 170.51705 * 3 2 1 6 6 H 1.08000 * 119.99800 * 113.57435 * 5 3 2 7 7 C 1.37874 * 119.99972 * 293.30083 * 5 3 2 8 8 N 1.31522 * 119.99571 * 0.27380 * 7 5 3 9 9 Si 1.86793 * 120.00336 * 180.27531 * 7 5 3 10 10 H 1.48496 * 109.47385 * 89.99990 * 9 7 5 11 11 H 1.48506 * 109.47391 * 210.00138 * 9 7 5 12 12 H 1.48500 * 109.46840 * 330.00026 * 9 7 5 13 13 N 1.46906 * 109.46987 * 290.51852 * 3 2 1 14 14 C 1.46943 * 110.99834 * 75.02402 * 13 3 2 15 15 C 1.53630 * 109.64339 * 53.08320 * 14 13 3 16 16 C 1.50417 * 107.73905 * 48.72667 * 15 14 13 17 17 C 1.40215 * 130.32863 * 164.51851 * 16 15 14 18 18 C 1.47715 * 126.69355 * 0.16366 * 17 16 15 19 19 O 1.21573 * 119.99910 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99864 * 179.97438 * 18 17 16 21 21 C 1.47026 * 125.64876 * 359.69460 * 20 18 17 22 22 C 1.54315 * 107.27477 * 180.96409 * 21 20 18 23 23 C 1.55157 * 102.86272 * 22.52778 * 22 21 20 24 24 C 1.47423 * 125.64822 * 180.02562 * 20 18 17 25 25 N 1.32292 * 106.61217 * 180.12664 * 17 16 15 26 26 N 1.28924 * 110.16252 * 359.97438 * 25 17 16 27 27 C 1.46505 * 124.97952 * 179.97438 * 26 25 17 28 28 C 1.34110 * 110.03823 * 359.90141 * 26 25 17 29 29 C 1.47329 * 111.00169 * 199.79821 * 13 3 2 30 30 H 1.09004 * 109.47161 * 207.09260 * 1 2 3 31 31 H 1.08996 * 109.47283 * 327.09075 * 1 2 3 32 32 H 1.09000 * 109.47092 * 87.09214 * 1 2 3 33 33 H 1.08999 * 109.47254 * 239.99708 * 2 1 3 34 34 H 1.09007 * 109.46835 * 120.00015 * 2 1 3 35 35 H 0.97004 * 119.99279 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.43686 * 173.13894 * 14 13 3 37 37 H 1.08996 * 109.44336 * 293.03068 * 14 13 3 38 38 H 1.08998 * 109.80576 * 168.27846 * 15 14 13 39 39 H 1.08996 * 109.80616 * 289.10638 * 15 14 13 40 40 H 1.08997 * 109.88031 * 300.50775 * 21 20 18 41 41 H 1.09000 * 109.88213 * 61.67892 * 21 20 18 42 42 H 1.08995 * 110.93140 * 264.11321 * 22 21 20 43 43 H 1.09001 * 110.58945 * 140.78127 * 22 21 20 44 44 H 1.09000 * 111.00787 * 206.22252 * 23 22 21 45 45 H 1.09004 * 111.03712 * 82.39028 * 23 22 21 46 46 H 1.08999 * 110.36735 * 274.67323 * 24 20 18 47 47 H 1.08999 * 110.36548 * 36.88906 * 24 20 18 48 48 H 1.09008 * 109.47028 * 89.97165 * 27 26 25 49 49 H 1.08997 * 109.47231 * 209.97256 * 27 26 25 50 50 H 1.08997 * 109.47045 * 329.97282 * 27 26 25 51 51 H 1.08997 * 109.71127 * 46.68057 * 29 13 3 52 52 H 1.08996 * 109.71217 * 167.31535 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5450 2.0028 0.7931 5 6 3.5287 1.4489 0.2341 6 1 4.1969 1.7777 -0.5481 7 6 4.0374 1.0405 1.4488 8 7 3.2236 0.6402 2.4013 9 14 5.8821 1.0559 1.7417 10 1 6.2843 2.3730 2.2971 11 1 6.2395 -0.0172 2.7041 12 1 6.5892 0.8238 0.4566 13 7 1.7456 2.0659 -1.2972 14 6 0.3194 2.4019 -1.4083 15 6 -0.1086 3.2443 -0.1969 16 6 0.8972 4.3501 -0.0294 17 6 0.8269 5.5353 0.7166 18 6 -0.3053 5.9874 1.5508 19 8 -1.3065 5.3035 1.6388 20 7 -0.2278 7.1575 2.2150 21 6 0.9209 8.0751 2.2032 22 6 0.5671 9.2640 3.1211 23 6 -0.5259 8.6708 4.0489 24 6 -1.2782 7.7262 3.0791 25 7 1.9727 6.1692 0.5284 26 7 2.7338 5.4874 -0.2578 27 6 4.0767 5.8893 -0.6836 28 6 2.1166 4.3556 -0.6273 29 6 2.6004 3.2445 -1.5227 30 1 -0.3634 -0.9149 0.4680 31 1 -0.3633 0.8627 0.5583 32 1 -0.3633 0.0521 -1.0263 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8901 35 1 3.5815 0.3526 3.2557 36 1 0.1508 2.9699 -2.3231 37 1 -0.2683 1.4844 -1.4380 38 1 -1.0974 3.6680 -0.3726 39 1 -0.1271 2.6220 0.6977 40 1 1.8071 7.5644 2.5799 41 1 1.0994 8.4326 1.1891 42 1 0.1705 10.0982 2.5425 43 1 1.4374 9.5739 3.6997 44 1 -1.1863 9.4525 4.4242 45 1 -0.0797 8.1113 4.8712 46 1 -1.9965 8.2889 2.4829 47 1 -1.7832 6.9349 3.6330 48 1 4.8124 5.5035 0.0223 49 1 4.2791 5.4863 -1.6759 50 1 4.1379 6.9771 -0.7139 51 1 3.6346 3.0004 -1.2797 52 1 2.5306 3.5552 -2.5651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167850.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:18 Heat of formation + Delta-G solvation = 74.374994 kcal Electronic energy + Delta-G solvation = -32931.620908 eV Core-core repulsion = 28933.717931 eV Total energy + Delta-G solvation = -3997.902976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.37627 -39.57773 -38.18214 -37.12363 -33.69912 -33.22316 -31.78709 -31.59980 -30.31980 -29.35526 -29.04722 -27.32278 -26.56513 -24.38198 -24.07505 -22.85096 -21.71584 -21.40805 -21.08101 -20.10781 -18.90316 -18.09712 -16.99367 -16.54547 -16.21023 -16.02878 -15.84643 -15.21746 -15.02832 -14.29427 -14.16310 -14.13826 -13.59097 -13.48661 -13.37465 -13.12713 -12.81700 -12.77166 -12.46285 -12.37469 -12.30377 -12.22612 -12.12023 -11.81710 -11.49745 -11.40095 -11.32674 -11.24788 -10.92868 -10.87547 -10.74855 -10.64634 -10.44482 -10.13920 -9.92251 -9.82413 -9.61937 -9.22417 -8.71406 -8.66111 -8.48233 -8.40393 -7.92597 -7.23304 -6.04447 -4.08876 1.96562 2.65185 2.82196 3.18814 3.22753 3.31504 3.32368 3.80069 4.35663 4.37504 4.51718 4.69009 4.79045 4.95432 5.11507 5.21716 5.22509 5.27037 5.27900 5.30555 5.51521 5.55990 5.57030 5.62589 5.65570 5.77183 5.86550 5.88518 5.91034 6.00394 6.04986 6.10021 6.14518 6.26423 6.31333 6.46131 6.50240 6.53759 6.67887 6.75300 6.81779 6.95792 7.10417 7.20728 7.29526 7.37161 7.56860 7.62734 7.71391 7.84441 8.10075 8.25766 8.29361 8.53008 8.57592 8.97914 9.55107 11.03319 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.004104 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.597178 B = 6820.382102 C = 7494.811549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C 0.208 3.792 4 H 0.026 0.974 5 C -0.516 4.516 6 H 0.063 0.937 7 C 0.065 3.935 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.284 1.284 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.519 5.519 14 C 0.036 3.964 15 C -0.074 4.074 16 C -0.143 4.143 17 C -0.014 4.014 18 C 0.624 3.376 19 O -0.531 6.531 20 N -0.615 5.615 21 C 0.113 3.887 22 C -0.134 4.134 23 C -0.134 4.134 24 C 0.107 3.893 25 N -0.281 5.281 26 N -0.270 5.270 27 C 0.090 3.910 28 C 0.011 3.989 29 C 0.124 3.876 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.260 0.740 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.112 0.888 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.790 15.147 -2.990 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 C 0.102 3.898 4 H 0.044 0.956 5 C -0.554 4.554 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.521 5.521 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.241 5.241 14 C -0.093 4.093 15 C -0.114 4.114 16 C -0.153 4.153 17 C -0.171 4.171 18 C 0.413 3.587 19 O -0.405 6.405 20 N -0.350 5.350 21 C -0.010 4.010 22 C -0.172 4.172 23 C -0.172 4.172 24 C -0.015 4.015 25 N -0.118 5.118 26 N -0.057 5.057 27 C -0.051 4.051 28 C -0.117 4.117 29 C -0.007 4.007 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.103 0.897 49 H 0.112 0.888 50 H 0.108 0.892 51 H 0.130 0.870 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.526 15.261 -2.911 15.740 hybrid contribution 0.666 0.048 0.901 1.121 sum -1.860 15.309 -2.011 15.552 Atomic orbital electron populations 1.22235 0.99480 1.00151 0.99365 1.21485 0.91681 0.99504 1.01543 1.19465 0.95585 0.90884 0.83873 0.95640 1.21224 0.91437 1.44296 0.98431 0.91900 1.24905 0.97425 0.95345 0.96110 1.69941 1.34066 1.43560 1.04539 0.86687 0.86090 0.77602 0.78174 1.21061 1.21147 1.19751 1.62535 1.02291 1.22464 1.36831 1.22733 0.91054 0.99536 0.95946 1.20676 0.96032 0.93788 1.00862 1.19735 0.96764 0.97077 1.01749 1.21065 0.94035 0.96804 1.05215 1.16571 0.85206 0.78945 0.78028 1.90767 1.31509 1.54406 1.63859 1.48250 1.18122 1.20480 1.48140 1.21983 0.89162 0.89637 1.00239 1.22683 0.99422 0.97363 0.97717 1.22787 0.97896 0.98811 0.97713 1.22183 0.90704 0.96745 0.91912 1.73745 1.02720 1.23230 1.12072 1.44876 1.13617 1.14491 1.32670 1.22074 0.78919 1.02379 1.01715 1.22396 0.93838 0.91431 1.04058 1.21102 1.00928 0.84492 0.94146 0.94972 0.93078 0.93624 0.94054 0.90002 0.92971 0.92570 0.88759 0.91075 0.89748 0.90864 0.91110 0.90739 0.90140 0.89924 0.90535 0.91597 0.90309 0.89704 0.88786 0.89222 0.86996 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 8.37 37.15 0.31 -2.80 16 2 C -0.10 -2.42 5.49 -26.74 -0.15 -2.57 16 3 C 0.21 4.99 1.13 -68.86 -0.08 4.92 16 4 H 0.03 0.71 5.11 -51.93 -0.27 0.45 16 5 C -0.52 -13.30 7.61 -34.44 -0.26 -13.56 16 6 H 0.06 1.57 5.62 -52.49 -0.30 1.27 16 7 C 0.06 1.73 5.27 -17.82 -0.09 1.64 16 8 N -0.88 -25.03 11.82 55.43 0.66 -24.38 16 9 Si 0.89 20.60 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.52 -10.70 4.79 -228.67 -1.09 -11.80 16 14 C 0.04 0.66 5.29 -3.47 -0.02 0.65 16 15 C -0.07 -1.50 4.67 -27.69 -0.13 -1.63 16 16 C -0.14 -2.99 5.46 -104.89 -0.57 -3.56 16 17 C -0.01 -0.28 6.96 -83.05 -0.58 -0.86 16 18 C 0.62 12.23 7.86 -12.39 -0.10 12.13 16 19 O -0.53 -11.62 16.21 5.30 0.09 -11.53 16 20 N -0.61 -9.55 3.33 -171.70 -0.57 -10.13 16 21 C 0.11 1.43 5.54 -3.07 -0.02 1.41 16 22 C -0.13 -1.18 6.95 -24.90 -0.17 -1.36 16 23 C -0.13 -1.20 7.08 -24.59 -0.17 -1.38 16 24 C 0.11 1.31 6.91 -2.54 -0.02 1.29 16 25 N -0.28 -5.11 9.57 33.24 0.32 -4.79 16 26 N -0.27 -4.66 3.69 -63.96 -0.24 -4.89 16 27 C 0.09 1.07 11.18 59.85 0.67 1.74 16 28 C 0.01 0.21 6.43 -82.47 -0.53 -0.32 16 29 C 0.12 2.30 5.39 -4.75 -0.03 2.28 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 1.06 5.18 -51.93 -0.27 0.79 16 32 H 0.05 0.81 6.04 -51.93 -0.31 0.50 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 2.15 6.46 -51.93 -0.34 1.82 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.09 1.69 4.24 -51.93 -0.22 1.47 16 38 H 0.07 1.39 7.80 -51.93 -0.41 0.99 16 39 H 0.08 1.93 4.87 -51.93 -0.25 1.68 16 40 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 41 H 0.07 0.91 7.76 -51.93 -0.40 0.50 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 48 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 49 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 50 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.11 2.19 5.09 -51.93 -0.26 1.92 16 52 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -32.47 387.47 -9.99 -42.46 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.03 Total: 5.63 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.93 Total: -2.00 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.93 Total: -55.98 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.47 -9.99 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167850.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.840 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds