Wall clock time and date at job start Wed Apr 1 2020 03:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47551 * 2 1 4 4 H 1.09002 * 109.46792 * 50.51272 * 3 2 1 5 5 C 1.50700 * 109.47667 * 170.51705 * 3 2 1 6 6 H 1.08000 * 119.99800 * 113.57435 * 5 3 2 7 7 C 1.37874 * 119.99972 * 293.30083 * 5 3 2 8 8 N 1.31522 * 119.99571 * 0.27380 * 7 5 3 9 9 Si 1.86793 * 120.00336 * 180.27531 * 7 5 3 10 10 H 1.48496 * 109.47385 * 89.99990 * 9 7 5 11 11 H 1.48506 * 109.47391 * 210.00138 * 9 7 5 12 12 H 1.48500 * 109.46840 * 330.00026 * 9 7 5 13 13 N 1.46906 * 109.46987 * 290.51852 * 3 2 1 14 14 C 1.46943 * 110.99834 * 75.02402 * 13 3 2 15 15 C 1.53630 * 109.64339 * 53.08320 * 14 13 3 16 16 C 1.50417 * 107.73905 * 48.72667 * 15 14 13 17 17 C 1.40215 * 130.32863 * 164.51851 * 16 15 14 18 18 C 1.47715 * 126.69355 * 0.16366 * 17 16 15 19 19 O 1.21573 * 119.99910 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99864 * 179.97438 * 18 17 16 21 21 C 1.47026 * 125.64876 * 359.69460 * 20 18 17 22 22 C 1.54315 * 107.27477 * 180.96409 * 21 20 18 23 23 C 1.55157 * 102.86272 * 22.52778 * 22 21 20 24 24 C 1.47423 * 125.64822 * 180.02562 * 20 18 17 25 25 N 1.32292 * 106.61217 * 180.12664 * 17 16 15 26 26 N 1.28924 * 110.16252 * 359.97438 * 25 17 16 27 27 C 1.46505 * 124.97952 * 179.97438 * 26 25 17 28 28 C 1.34110 * 110.03823 * 359.90141 * 26 25 17 29 29 C 1.47329 * 111.00169 * 199.79821 * 13 3 2 30 30 H 1.09004 * 109.47161 * 207.09260 * 1 2 3 31 31 H 1.08996 * 109.47283 * 327.09075 * 1 2 3 32 32 H 1.09000 * 109.47092 * 87.09214 * 1 2 3 33 33 H 1.08999 * 109.47254 * 239.99708 * 2 1 3 34 34 H 1.09007 * 109.46835 * 120.00015 * 2 1 3 35 35 H 0.97004 * 119.99279 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.43686 * 173.13894 * 14 13 3 37 37 H 1.08996 * 109.44336 * 293.03068 * 14 13 3 38 38 H 1.08998 * 109.80576 * 168.27846 * 15 14 13 39 39 H 1.08996 * 109.80616 * 289.10638 * 15 14 13 40 40 H 1.08997 * 109.88031 * 300.50775 * 21 20 18 41 41 H 1.09000 * 109.88213 * 61.67892 * 21 20 18 42 42 H 1.08995 * 110.93140 * 264.11321 * 22 21 20 43 43 H 1.09001 * 110.58945 * 140.78127 * 22 21 20 44 44 H 1.09000 * 111.00787 * 206.22252 * 23 22 21 45 45 H 1.09004 * 111.03712 * 82.39028 * 23 22 21 46 46 H 1.08999 * 110.36735 * 274.67323 * 24 20 18 47 47 H 1.08999 * 110.36548 * 36.88906 * 24 20 18 48 48 H 1.09008 * 109.47028 * 89.97165 * 27 26 25 49 49 H 1.08997 * 109.47231 * 209.97256 * 27 26 25 50 50 H 1.08997 * 109.47045 * 329.97282 * 27 26 25 51 51 H 1.08997 * 109.71127 * 46.68057 * 29 13 3 52 52 H 1.08996 * 109.71217 * 167.31535 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5450 2.0028 0.7931 5 6 3.5287 1.4489 0.2341 6 1 4.1969 1.7777 -0.5481 7 6 4.0374 1.0405 1.4488 8 7 3.2236 0.6402 2.4013 9 14 5.8821 1.0559 1.7417 10 1 6.2843 2.3730 2.2971 11 1 6.2395 -0.0172 2.7041 12 1 6.5892 0.8238 0.4566 13 7 1.7456 2.0659 -1.2972 14 6 0.3194 2.4019 -1.4083 15 6 -0.1086 3.2443 -0.1969 16 6 0.8972 4.3501 -0.0294 17 6 0.8269 5.5353 0.7166 18 6 -0.3053 5.9874 1.5508 19 8 -1.3065 5.3035 1.6388 20 7 -0.2278 7.1575 2.2150 21 6 0.9209 8.0751 2.2032 22 6 0.5671 9.2640 3.1211 23 6 -0.5259 8.6708 4.0489 24 6 -1.2782 7.7262 3.0791 25 7 1.9727 6.1692 0.5284 26 7 2.7338 5.4874 -0.2578 27 6 4.0767 5.8893 -0.6836 28 6 2.1166 4.3556 -0.6273 29 6 2.6004 3.2445 -1.5227 30 1 -0.3634 -0.9149 0.4680 31 1 -0.3633 0.8627 0.5583 32 1 -0.3633 0.0521 -1.0263 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8901 35 1 3.5815 0.3526 3.2557 36 1 0.1508 2.9699 -2.3231 37 1 -0.2683 1.4844 -1.4380 38 1 -1.0974 3.6680 -0.3726 39 1 -0.1271 2.6220 0.6977 40 1 1.8071 7.5644 2.5799 41 1 1.0994 8.4326 1.1891 42 1 0.1705 10.0982 2.5425 43 1 1.4374 9.5739 3.6997 44 1 -1.1863 9.4525 4.4242 45 1 -0.0797 8.1113 4.8712 46 1 -1.9965 8.2889 2.4829 47 1 -1.7832 6.9349 3.6330 48 1 4.8124 5.5035 0.0223 49 1 4.2791 5.4863 -1.6759 50 1 4.1379 6.9771 -0.7139 51 1 3.6346 3.0004 -1.2797 52 1 2.5306 3.5552 -2.5651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167850.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:17 Heat of formation + Delta-G solvation = 52.906572 kcal Electronic energy + Delta-G solvation = -32932.551848 eV Core-core repulsion = 28933.717931 eV Total energy + Delta-G solvation = -3998.833917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.81357 -40.83934 -39.82407 -38.36486 -35.40961 -34.71177 -33.60681 -32.77797 -31.82373 -30.85446 -30.06367 -28.87758 -28.04248 -26.08602 -25.35188 -24.44126 -23.22586 -22.70516 -22.03650 -21.77556 -20.22340 -19.74696 -18.61582 -17.80583 -17.57783 -17.52369 -17.15826 -16.95647 -16.34276 -16.03282 -15.88617 -15.43513 -14.96902 -14.63867 -14.55042 -14.37331 -14.29076 -14.12174 -13.91276 -13.86723 -13.64658 -13.47306 -13.36453 -13.27371 -13.13844 -13.02847 -12.74224 -12.55183 -12.36474 -12.25859 -12.17638 -12.04140 -11.80526 -11.65898 -11.61395 -11.48500 -11.24843 -10.98722 -10.57015 -10.43487 -10.05976 -9.72024 -9.44168 -8.95248 -8.08448 -6.18226 0.49989 1.15279 1.37646 1.41175 1.49935 1.57548 1.97824 2.30129 2.41813 3.22859 3.24814 3.34998 3.61293 3.66724 3.82845 4.00829 4.04156 4.10695 4.29196 4.30559 4.35529 4.36651 4.45130 4.47617 4.58303 4.59684 4.63305 4.63974 4.67193 4.70239 4.81776 4.87948 4.89925 4.96989 4.97608 5.05735 5.07256 5.10123 5.24200 5.26917 5.30436 5.36442 5.41181 5.53405 5.57518 5.70965 5.73637 5.91212 5.94379 6.27920 6.31698 6.37387 6.75163 6.83631 7.00471 7.08867 7.50128 8.99159 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.004104 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.597178 B = 6820.382102 C = 7494.811549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C 0.219 3.781 4 H -0.016 1.016 5 C -0.518 4.518 6 H 0.074 0.926 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.948 3.052 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.255 1.255 13 N -0.520 5.520 14 C 0.042 3.958 15 C -0.063 4.063 16 C -0.177 4.177 17 C -0.041 4.041 18 C 0.611 3.389 19 O -0.572 6.572 20 N -0.613 5.613 21 C 0.108 3.892 22 C -0.121 4.121 23 C -0.123 4.123 24 C 0.096 3.904 25 N -0.267 5.267 26 N -0.265 5.265 27 C 0.076 3.924 28 C 0.005 3.995 29 C 0.126 3.874 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.084 0.916 49 H 0.121 0.879 50 H 0.118 0.882 51 H 0.105 0.895 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.380 17.579 -4.513 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C 0.112 3.888 4 H 0.002 0.998 5 C -0.556 4.556 6 H 0.092 0.908 7 C -0.187 4.187 8 N -0.561 5.561 9 Si 0.774 3.226 10 H -0.209 1.209 11 H -0.219 1.219 12 H -0.179 1.179 13 N -0.241 5.241 14 C -0.086 4.086 15 C -0.102 4.102 16 C -0.188 4.188 17 C -0.198 4.198 18 C 0.399 3.601 19 O -0.450 6.450 20 N -0.346 5.346 21 C -0.015 4.015 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.026 4.026 25 N -0.105 5.105 26 N -0.052 5.052 27 C -0.062 4.062 28 C -0.124 4.124 29 C -0.004 4.004 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.134 0.866 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.103 0.897 49 H 0.140 0.860 50 H 0.136 0.864 51 H 0.123 0.877 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.082 17.752 -4.447 18.333 hybrid contribution 0.248 -0.629 1.366 1.525 sum -0.834 17.123 -3.081 17.418 Atomic orbital electron populations 1.22107 0.97083 1.00036 1.00964 1.21344 0.93891 0.98827 0.99818 1.19140 0.94415 0.90846 0.84389 0.99840 1.21638 0.92611 1.42905 0.98473 0.90771 1.25692 1.01520 0.95379 0.96119 1.70117 1.35907 1.45209 1.04862 0.85703 0.81255 0.77184 0.78434 1.20855 1.21865 1.17922 1.62488 1.03627 1.23738 1.34248 1.22753 0.89946 0.99837 0.96040 1.20490 0.96215 0.93538 0.99980 1.20012 0.97956 0.97697 1.03105 1.21303 0.95019 0.97335 1.06106 1.16735 0.84788 0.80011 0.78601 1.90719 1.32782 1.55941 1.65561 1.48418 1.19766 1.19463 1.46932 1.22168 0.87668 0.90345 1.01277 1.22697 1.00142 0.95957 0.97051 1.22795 0.98014 0.98652 0.96605 1.22493 0.90750 0.96973 0.92354 1.73726 1.02125 1.22932 1.11753 1.45407 1.14774 1.13640 1.31392 1.22568 0.76050 1.04576 1.03017 1.22467 0.93534 0.92260 1.04154 1.21188 0.99804 0.83475 0.95939 0.93986 0.94497 0.90924 0.93741 0.93540 0.93562 0.90019 0.88153 0.91308 0.93482 0.92618 0.91165 0.88583 0.88160 0.86562 0.91130 0.90085 0.92075 0.89709 0.86016 0.86354 0.87739 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 8.37 71.98 0.60 -5.29 16 2 C -0.10 -4.79 5.49 30.59 0.17 -4.62 16 3 C 0.22 10.75 1.13 44.17 0.05 10.80 16 4 H -0.02 -0.93 5.11 -2.39 -0.01 -0.94 16 5 C -0.52 -26.85 7.61 25.60 0.19 -26.65 16 6 H 0.07 3.61 5.62 -2.91 -0.02 3.59 16 7 C 0.01 0.63 5.27 84.65 0.45 1.07 16 8 N -0.92 -54.34 11.82 21.45 0.25 -54.08 16 9 Si 0.95 42.48 29.54 68.60 2.03 44.51 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 13 N -0.52 -21.01 4.79 -877.39 -4.20 -25.21 16 14 C 0.04 1.55 5.29 86.51 0.46 2.01 16 15 C -0.06 -2.66 4.67 29.97 0.14 -2.52 16 16 C -0.18 -7.62 5.46 -20.04 -0.11 -7.73 16 17 C -0.04 -1.72 6.96 42.06 0.29 -1.43 16 18 C 0.61 25.12 7.86 86.75 0.68 25.80 16 19 O -0.57 -26.75 16.21 -3.95 -0.06 -26.82 16 20 N -0.61 -19.35 3.33 -815.41 -2.71 -22.07 16 21 C 0.11 2.64 5.54 86.73 0.48 3.12 16 22 C -0.12 -1.78 6.95 31.78 0.22 -1.56 16 23 C -0.12 -1.92 7.08 31.98 0.23 -1.69 16 24 C 0.10 2.30 6.91 86.85 0.60 2.90 16 25 N -0.27 -9.69 9.57 -48.75 -0.47 -10.16 16 26 N -0.26 -8.82 3.69 -356.27 -1.31 -10.13 16 27 C 0.08 1.60 11.18 127.77 1.43 3.03 16 28 C 0.00 0.18 6.43 41.64 0.27 0.45 16 29 C 0.13 4.46 5.39 85.47 0.46 4.92 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.60 5.18 -2.39 -0.01 1.58 16 32 H 0.07 2.53 6.04 -2.39 -0.01 2.51 16 33 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 2.54 6.46 -2.38 -0.02 2.53 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.08 2.60 8.08 -2.39 -0.02 2.58 16 37 H 0.10 3.51 4.24 -2.39 -0.01 3.50 16 38 H 0.07 2.85 7.80 -2.39 -0.02 2.83 16 39 H 0.05 2.33 4.87 -2.39 -0.01 2.32 16 40 H 0.06 1.56 7.68 -2.39 -0.02 1.54 16 41 H 0.07 1.72 7.76 -2.39 -0.02 1.70 16 42 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.06 1.68 8.03 -2.39 -0.02 1.66 16 48 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 49 H 0.12 1.88 7.90 -2.39 -0.02 1.86 16 50 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.10 3.87 5.09 -2.39 -0.01 3.86 16 52 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -75.49 387.47 1.07 -74.42 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.94 Total: 26.95 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 6.61 Total: 2.60 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -8.44 Total: -121.65 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.06 Total: -26.82 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -75.49 1.07 -74.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167850.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.323 kcal (2) G-P(sol) polarization free energy of solvation -75.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds