Wall clock time and date at job start Wed Apr 1 2020 03:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.38410 * 119.99743 * 299.99699 * 13 3 2 15 15 N 1.32494 * 119.21749 * 179.72751 * 14 13 3 16 16 C 1.32276 * 120.74032 * 179.72013 * 15 14 13 17 17 C 1.38607 * 119.19511 * 0.54255 * 16 15 14 18 18 C 1.38601 * 118.55884 * 359.73573 * 17 16 15 19 19 N 1.32280 * 119.19870 * 359.97438 * 18 17 16 20 20 C 1.46502 * 120.00487 * 119.99365 * 13 3 2 21 21 H 1.08998 * 110.45585 * 2.61129 * 20 13 3 22 22 C 1.54510 * 110.51136 * 125.36391 * 20 13 3 23 23 O 1.44520 * 104.89734 * 94.83521 * 22 20 13 24 24 C 1.43862 * 105.27003 * 39.83137 * 23 22 20 25 25 C 1.53977 * 105.46372 * 320.20285 * 24 23 22 26 26 C 1.52549 * 110.23291 * 79.07963 * 24 23 22 27 27 C 1.53140 * 109.32463 * 65.78525 * 26 24 23 28 28 N 1.46855 * 109.45425 * 58.26453 * 27 26 24 29 29 C 1.46859 * 111.30557 * 297.82447 * 28 27 26 30 30 C 1.52544 * 110.23155 * 201.31015 * 24 23 22 31 31 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 35 35 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 36 36 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 37 37 H 1.07998 * 120.40001 * 180.30160 * 16 15 14 38 38 H 1.08003 * 120.72004 * 179.70993 * 17 16 15 39 39 H 1.07999 * 120.40134 * 180.02562 * 18 17 16 40 40 H 1.09006 * 110.35826 * 213.68961 * 22 20 13 41 41 H 1.09008 * 110.35799 * 335.98057 * 22 20 13 42 42 H 1.09000 * 110.53671 * 264.80054 * 25 24 23 43 43 H 1.08996 * 110.53926 * 142.00887 * 25 24 23 44 44 H 1.09005 * 109.49532 * 185.74043 * 26 24 23 45 45 H 1.08996 * 109.49552 * 305.83074 * 26 24 23 46 46 H 1.08999 * 109.47487 * 298.26698 * 27 26 24 47 47 H 1.08996 * 109.47597 * 178.25764 * 27 26 24 48 48 H 1.00899 * 110.99819 * 62.00287 * 28 27 26 49 49 H 1.08999 * 109.47494 * 302.18955 * 29 28 27 50 50 H 1.08997 * 109.47578 * 182.16863 * 29 28 27 51 51 H 1.09001 * 109.49670 * 54.18089 * 30 24 23 52 52 H 1.09009 * 109.49414 * 174.23647 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 2.0885 1.5887 -2.4629 15 7 1.7242 2.1902 -3.5858 16 6 2.1280 1.7329 -4.7595 17 6 2.9317 0.6046 -4.8053 18 6 3.2893 -0.0032 -3.6121 19 7 2.8560 0.5088 -2.4719 20 6 0.8034 3.2910 -1.2217 21 1 0.5908 3.5814 -0.1928 22 6 1.4753 4.4527 -1.9874 23 8 0.9220 4.3879 -3.3209 24 6 -0.4698 4.0725 -3.1388 25 6 -0.5109 3.0406 -1.9966 26 6 -1.2471 5.3244 -2.7442 27 6 -1.2312 6.3188 -3.9087 28 7 -1.8185 5.6887 -5.0981 29 6 -1.0355 4.5220 -5.5255 30 6 -1.0450 3.4672 -4.4153 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 3.8293 -0.0605 2.9503 37 1 1.8317 2.2304 -5.6711 38 1 3.2716 0.2074 -5.7504 39 1 3.9148 -0.8836 -3.6132 40 1 1.2294 5.4068 -1.5209 41 1 2.5558 4.3121 -2.0180 42 1 -0.5312 2.0272 -2.3974 43 1 -1.3732 3.2161 -1.3535 44 1 -2.2770 5.0545 -2.5104 45 1 -0.7827 5.7805 -1.8700 46 1 -0.2032 6.6115 -4.1226 47 1 -1.8120 7.2014 -3.6409 48 1 -2.7821 5.4377 -4.9357 49 1 -0.0089 4.8276 -5.7275 50 1 -1.4744 4.1014 -6.4302 51 1 -0.4383 2.6140 -4.7189 52 1 -2.0685 3.1392 -4.2333 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168312.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:39 Heat of formation + Delta-G solvation = 42.944848 kcal Electronic energy + Delta-G solvation = -33937.752176 eV Core-core repulsion = 29938.486287 eV Total energy + Delta-G solvation = -3999.265890 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74473 -39.70441 -37.29704 -35.97102 -33.29409 -32.62889 -31.64226 -31.27973 -30.97023 -30.53155 -28.77617 -26.42132 -25.98338 -23.74315 -23.50995 -22.99736 -22.64422 -21.99704 -20.41345 -19.84073 -19.56675 -17.02669 -16.84198 -16.28706 -15.78858 -15.45444 -15.17479 -14.90069 -14.69283 -14.61351 -14.33938 -14.30507 -13.94940 -13.85600 -13.33829 -12.98646 -12.84728 -12.73245 -12.61210 -12.53350 -12.27070 -11.69152 -11.64628 -11.46295 -11.29107 -11.18706 -11.11107 -11.01964 -10.85294 -10.77092 -10.58082 -10.42211 -10.25575 -10.05479 -10.01831 -9.81217 -9.61292 -9.43671 -9.07366 -8.88383 -8.39187 -8.34655 -7.96317 -6.89938 -5.99330 -4.02798 1.96021 2.00003 3.32325 3.36532 3.40279 3.61199 4.21771 4.28743 4.45036 4.68311 4.84049 4.84994 4.95434 5.05407 5.15976 5.17315 5.27624 5.30877 5.34290 5.38884 5.42186 5.46639 5.66233 5.69906 5.72379 5.78602 5.82814 5.92451 5.93876 6.01059 6.06509 6.08833 6.18081 6.22016 6.25692 6.29489 6.34174 6.43503 6.45840 6.54945 6.83375 6.93343 7.00345 7.07880 7.30241 7.33638 7.38607 7.52096 7.73141 7.81810 7.93441 8.16031 8.23793 8.56332 8.95140 9.26491 9.59981 11.04548 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.004173 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.709774 B = 6708.879168 C = 7279.407442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.291 3.709 4 H 0.041 0.959 5 C -0.491 4.491 6 H 0.054 0.946 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.557 5.557 14 C 0.567 3.433 15 N -0.540 5.540 16 C 0.175 3.825 17 C -0.319 4.319 18 C 0.174 3.826 19 N -0.520 5.520 20 C 0.136 3.864 21 H 0.094 0.906 22 C 0.046 3.954 23 O -0.321 6.321 24 C 0.122 3.878 25 C -0.144 4.144 26 C -0.175 4.175 27 C 0.064 3.936 28 N -0.688 5.688 29 C 0.062 3.938 30 C -0.135 4.135 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.030 0.970 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.261 0.739 37 H 0.147 0.853 38 H 0.124 0.876 39 H 0.150 0.850 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.334 0.666 49 H 0.080 0.920 50 H 0.067 0.933 51 H 0.083 0.917 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.457 5.899 -11.770 16.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.191 3.809 4 H 0.059 0.941 5 C -0.530 4.530 6 H 0.072 0.928 7 C -0.138 4.138 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.270 5.270 14 C 0.213 3.787 15 N -0.262 5.262 16 C 0.006 3.994 17 C -0.346 4.346 18 C 0.003 3.997 19 N -0.240 5.240 20 C 0.030 3.970 21 H 0.112 0.888 22 C -0.033 4.033 23 O -0.239 6.239 24 C 0.082 3.918 25 C -0.183 4.183 26 C -0.215 4.215 27 C -0.066 4.066 28 N -0.316 5.316 29 C -0.068 4.068 30 C -0.175 4.175 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.165 0.835 38 H 0.142 0.858 39 H 0.167 0.833 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.151 0.849 49 H 0.098 0.902 50 H 0.086 0.914 51 H 0.102 0.898 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.403 6.740 -11.092 16.028 hybrid contribution 1.105 -1.257 0.358 1.712 sum -8.298 5.483 -10.734 14.633 Atomic orbital electron populations 1.21837 0.99924 0.98912 0.99453 1.22032 0.91000 1.00177 1.04336 1.18878 0.94838 0.89419 0.77751 0.94146 1.21166 0.90744 1.36672 1.04391 0.92770 1.24786 0.97903 0.95352 0.95725 1.69844 1.34793 1.39271 1.09683 0.86614 0.85954 0.77994 0.77121 1.20658 1.21436 1.20349 1.47013 1.49650 1.26997 1.03369 1.19469 0.86746 0.86167 0.86357 1.68437 1.27989 1.32276 0.97531 1.22642 0.90417 0.91041 0.95325 1.22298 1.09388 1.02907 1.00031 1.22884 0.92880 0.96601 0.87318 1.68376 1.13825 1.12854 1.28956 1.22193 0.89358 0.85918 0.99526 0.88767 1.23619 0.99565 0.95904 0.84169 1.89150 1.19535 1.90755 1.24411 1.21476 0.84055 0.91834 0.94455 1.23278 0.97320 1.00723 0.96966 1.22718 1.00482 0.98097 1.00170 1.21926 1.00929 0.95807 0.87910 1.60645 1.05795 1.29931 1.35217 1.21986 0.99331 0.89130 0.96334 1.22095 1.00055 1.00055 0.95259 0.94891 0.94276 0.95102 0.88272 0.91664 0.92929 0.83540 0.85782 0.83273 0.93039 0.89497 0.90314 0.91574 0.91730 0.91182 0.90383 0.91403 0.84930 0.90176 0.91438 0.89812 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.80 37.16 0.36 -2.50 16 2 C -0.14 -3.18 5.12 -26.74 -0.14 -3.32 16 3 C 0.29 6.86 2.07 -69.09 -0.14 6.72 16 4 H 0.04 1.02 7.58 -51.93 -0.39 0.63 16 5 C -0.49 -12.93 7.47 -34.44 -0.26 -13.19 16 6 H 0.05 1.51 7.47 -52.49 -0.39 1.12 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 8 N -0.90 -24.56 11.29 55.43 0.63 -23.93 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.56 -11.29 1.88 -160.36 -0.30 -11.59 16 14 C 0.57 11.42 6.58 -322.80 -2.12 9.30 16 15 N -0.54 -9.37 4.21 -13.93 -0.06 -9.42 16 16 C 0.18 2.64 10.72 -17.22 -0.18 2.46 16 17 C -0.32 -4.69 10.16 -39.31 -0.40 -5.08 16 18 C 0.17 3.01 11.30 -17.22 -0.19 2.81 16 19 N -0.52 -10.97 6.40 -13.93 -0.09 -11.06 16 20 C 0.14 2.30 3.66 -66.29 -0.24 2.06 16 21 H 0.09 1.56 7.61 -51.93 -0.40 1.17 16 22 C 0.05 0.73 6.13 37.95 0.23 0.97 16 23 O -0.32 -4.88 7.90 -35.23 -0.28 -5.15 16 24 C 0.12 1.57 0.36 -90.57 -0.03 1.54 16 25 C -0.14 -2.10 4.86 -25.37 -0.12 -2.23 16 26 C -0.18 -1.92 4.81 -26.89 -0.13 -2.05 16 27 C 0.06 0.67 6.46 -3.78 -0.02 0.65 16 28 N -0.69 -7.12 6.85 -113.69 -0.78 -7.90 16 29 C 0.06 0.67 6.46 -3.77 -0.02 0.64 16 30 C -0.14 -1.60 4.92 -26.89 -0.13 -1.73 16 31 H 0.03 0.63 6.52 -51.93 -0.34 0.29 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 35 H 0.06 1.58 5.82 -51.93 -0.30 1.28 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.15 2.21 8.06 -52.49 -0.42 1.78 16 40 H 0.05 0.72 7.24 -51.93 -0.38 0.34 16 41 H 0.09 1.62 7.96 -51.92 -0.41 1.21 16 42 H 0.08 1.33 6.10 -51.93 -0.32 1.01 16 43 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 44 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 45 H 0.07 0.78 6.93 -51.93 -0.36 0.42 16 46 H 0.08 0.95 7.91 -51.93 -0.41 0.54 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.33 3.01 8.85 -39.29 -0.35 2.66 16 49 H 0.08 1.00 7.91 -51.93 -0.41 0.59 16 50 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.08 1.12 6.56 -51.93 -0.34 0.77 16 52 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -28.20 385.17 -12.20 -40.39 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -8.45 Total: 7.86 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -3.65 Total: -1.37 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.60 Total: -63.91 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.28 Total: -5.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.20 -12.20 -40.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168312.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.339 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds