Wall clock time and date at job start Wed Apr 1 2020 03:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.38410 * 119.99743 * 299.99699 * 13 3 2 15 15 N 1.32494 * 119.21749 * 179.72751 * 14 13 3 16 16 C 1.32276 * 120.74032 * 179.72013 * 15 14 13 17 17 C 1.38607 * 119.19511 * 0.54255 * 16 15 14 18 18 C 1.38601 * 118.55884 * 359.73573 * 17 16 15 19 19 N 1.32280 * 119.19870 * 359.97438 * 18 17 16 20 20 C 1.46502 * 120.00487 * 119.99365 * 13 3 2 21 21 H 1.08998 * 110.45585 * 2.61129 * 20 13 3 22 22 C 1.54510 * 110.51136 * 125.36391 * 20 13 3 23 23 O 1.44520 * 104.89734 * 94.83521 * 22 20 13 24 24 C 1.43862 * 105.27003 * 39.83137 * 23 22 20 25 25 C 1.53977 * 105.46372 * 320.20285 * 24 23 22 26 26 C 1.52549 * 110.23291 * 79.07963 * 24 23 22 27 27 C 1.53140 * 109.32463 * 65.78525 * 26 24 23 28 28 N 1.46855 * 109.45425 * 58.26453 * 27 26 24 29 29 C 1.46859 * 111.30557 * 297.82447 * 28 27 26 30 30 C 1.52544 * 110.23155 * 201.31015 * 24 23 22 31 31 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 35 35 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 36 36 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 37 37 H 1.07998 * 120.40001 * 180.30160 * 16 15 14 38 38 H 1.08003 * 120.72004 * 179.70993 * 17 16 15 39 39 H 1.07999 * 120.40134 * 180.02562 * 18 17 16 40 40 H 1.09006 * 110.35826 * 213.68961 * 22 20 13 41 41 H 1.09008 * 110.35799 * 335.98057 * 22 20 13 42 42 H 1.09000 * 110.53671 * 264.80054 * 25 24 23 43 43 H 1.08996 * 110.53926 * 142.00887 * 25 24 23 44 44 H 1.09005 * 109.49532 * 185.74043 * 26 24 23 45 45 H 1.08996 * 109.49552 * 305.83074 * 26 24 23 46 46 H 1.08999 * 109.47487 * 298.26698 * 27 26 24 47 47 H 1.08996 * 109.47597 * 178.25764 * 27 26 24 48 48 H 1.00899 * 110.99819 * 62.00287 * 28 27 26 49 49 H 1.08999 * 109.47494 * 302.18955 * 29 28 27 50 50 H 1.08997 * 109.47578 * 182.16863 * 29 28 27 51 51 H 1.09001 * 109.49670 * 54.18089 * 30 24 23 52 52 H 1.09009 * 109.49414 * 174.23647 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 2.0885 1.5887 -2.4629 15 7 1.7242 2.1902 -3.5858 16 6 2.1280 1.7329 -4.7595 17 6 2.9317 0.6046 -4.8053 18 6 3.2893 -0.0032 -3.6121 19 7 2.8560 0.5088 -2.4719 20 6 0.8034 3.2910 -1.2217 21 1 0.5908 3.5814 -0.1928 22 6 1.4753 4.4527 -1.9874 23 8 0.9220 4.3879 -3.3209 24 6 -0.4698 4.0725 -3.1388 25 6 -0.5109 3.0406 -1.9966 26 6 -1.2471 5.3244 -2.7442 27 6 -1.2312 6.3188 -3.9087 28 7 -1.8185 5.6887 -5.0981 29 6 -1.0355 4.5220 -5.5255 30 6 -1.0450 3.4672 -4.4153 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 3.8293 -0.0605 2.9503 37 1 1.8317 2.2304 -5.6711 38 1 3.2716 0.2074 -5.7504 39 1 3.9148 -0.8836 -3.6132 40 1 1.2294 5.4068 -1.5209 41 1 2.5558 4.3121 -2.0180 42 1 -0.5312 2.0272 -2.3974 43 1 -1.3732 3.2161 -1.3535 44 1 -2.2770 5.0545 -2.5104 45 1 -0.7827 5.7805 -1.8700 46 1 -0.2032 6.6115 -4.1226 47 1 -1.8120 7.2014 -3.6409 48 1 -2.7821 5.4377 -4.9357 49 1 -0.0089 4.8276 -5.7275 50 1 -1.4744 4.1014 -6.4302 51 1 -0.4383 2.6140 -4.7189 52 1 -2.0685 3.1392 -4.2333 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168312.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:38 Heat of formation + Delta-G solvation = 29.154674 kcal Electronic energy + Delta-G solvation = -33938.350163 eV Core-core repulsion = 29938.486287 eV Total energy + Delta-G solvation = -3999.863876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.00583 -40.90522 -38.55644 -37.31592 -34.93282 -34.12674 -33.07413 -32.75295 -31.98486 -31.62306 -30.24547 -28.18209 -27.09511 -25.31153 -24.90706 -24.28179 -23.76488 -23.09216 -21.82799 -21.41409 -20.59897 -18.69797 -18.29249 -17.64452 -17.06021 -16.77211 -16.56225 -16.29577 -16.01337 -15.85880 -15.57516 -15.29467 -15.23605 -15.07664 -14.82969 -14.65940 -14.27845 -13.94445 -13.74577 -13.65894 -13.44453 -13.24533 -13.13795 -12.95641 -12.92633 -12.64242 -12.48267 -12.32276 -12.18202 -12.04125 -11.98513 -11.76849 -11.65879 -11.62360 -11.41870 -11.31781 -11.18329 -11.00612 -10.65088 -10.39875 -10.17389 -9.38304 -9.19678 -8.41878 -8.00213 -6.12880 0.62770 0.69958 1.37822 1.39789 1.46595 2.14256 2.46568 3.07901 3.21501 3.37764 3.47916 3.68020 3.72653 3.84335 3.93693 4.01139 4.10653 4.15015 4.24075 4.29980 4.33979 4.48078 4.52592 4.54971 4.58978 4.63252 4.68867 4.70599 4.76093 4.77650 4.84377 4.87236 4.99613 5.01087 5.03374 5.10751 5.12419 5.20268 5.22365 5.26962 5.36503 5.44877 5.45643 5.67479 5.75040 5.82411 6.00280 6.16278 6.23953 6.26377 6.40498 6.52001 6.62784 6.84337 7.06836 7.50856 7.86735 8.97325 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.004173 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.709774 B = 6708.879168 C = 7279.407442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.126 4.126 3 C 0.303 3.697 4 H 0.018 0.982 5 C -0.492 4.492 6 H 0.032 0.968 7 C 0.022 3.978 8 N -0.916 5.916 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.567 5.567 14 C 0.549 3.451 15 N -0.534 5.534 16 C 0.167 3.833 17 C -0.297 4.297 18 C 0.152 3.848 19 N -0.568 5.568 20 C 0.129 3.871 21 H 0.090 0.910 22 C 0.056 3.944 23 O -0.330 6.330 24 C 0.124 3.876 25 C -0.133 4.133 26 C -0.170 4.170 27 C 0.069 3.931 28 N -0.689 5.689 29 C 0.070 3.930 30 C -0.130 4.130 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.260 0.740 37 H 0.182 0.818 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.345 0.655 49 H 0.062 0.938 50 H 0.083 0.917 51 H 0.068 0.932 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.842 6.679 -13.940 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.166 4.166 3 C 0.202 3.798 4 H 0.036 0.964 5 C -0.531 4.531 6 H 0.050 0.950 7 C -0.176 4.176 8 N -0.556 5.556 9 Si 0.772 3.228 10 H -0.205 1.205 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.282 5.282 14 C 0.194 3.806 15 N -0.256 5.256 16 C -0.002 4.002 17 C -0.323 4.323 18 C -0.017 4.017 19 N -0.290 5.290 20 C 0.023 3.977 21 H 0.109 0.891 22 C -0.022 4.022 23 O -0.248 6.248 24 C 0.084 3.916 25 C -0.172 4.172 26 C -0.209 4.209 27 C -0.061 4.061 28 N -0.318 5.318 29 C -0.060 4.060 30 C -0.169 4.169 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.199 0.801 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.103 0.897 48 H 0.163 0.837 49 H 0.080 0.920 50 H 0.102 0.898 51 H 0.087 0.913 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.793 7.520 -13.309 18.712 hybrid contribution 1.554 -1.508 0.888 2.341 sum -9.239 6.011 -12.421 16.606 Atomic orbital electron populations 1.21659 0.97299 0.99866 0.99828 1.21796 0.93267 0.99467 1.02037 1.18420 0.93050 0.89560 0.78807 0.96444 1.21269 0.92313 1.36018 1.03541 0.94956 1.25367 1.01125 0.95436 0.95713 1.69950 1.35826 1.39925 1.09939 0.85828 0.82180 0.77813 0.76966 1.20521 1.20722 1.20757 1.46742 1.50871 1.27980 1.02560 1.19547 0.87485 0.86597 0.86924 1.68485 1.27768 1.31845 0.97502 1.23324 0.89956 0.91279 0.95616 1.22645 1.07362 1.01726 1.00573 1.23319 0.93355 0.97481 0.87505 1.68251 1.15309 1.14106 1.31318 1.22385 0.90189 0.85201 0.99905 0.89150 1.23422 0.97574 0.96440 0.84792 1.89131 1.21006 1.90870 1.23752 1.21605 0.83220 0.92318 0.94499 1.23179 0.96431 1.00090 0.97456 1.22677 1.00870 0.97062 1.00293 1.21871 1.00277 0.96242 0.87691 1.60622 1.06409 1.29649 1.35100 1.21890 0.98642 0.88897 0.96541 1.22056 1.00227 0.99706 0.94905 0.94173 0.94082 0.93802 0.91475 0.92863 0.93059 0.80107 0.81917 0.81660 0.90989 0.92812 0.92394 0.90017 0.90179 0.91370 0.92202 0.89738 0.83656 0.91959 0.89842 0.91309 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.80 71.98 0.71 -4.46 16 2 C -0.13 -6.10 5.12 30.59 0.16 -5.94 16 3 C 0.30 14.92 2.07 44.24 0.09 15.01 16 4 H 0.02 0.94 7.58 -2.39 -0.02 0.92 16 5 C -0.49 -27.03 7.47 25.60 0.19 -26.83 16 6 H 0.03 1.88 7.47 -2.91 -0.02 1.86 16 7 C 0.02 1.21 5.29 84.65 0.45 1.66 16 8 N -0.92 -51.75 11.29 21.45 0.24 -51.51 16 9 Si 0.94 44.96 29.54 68.60 2.03 46.98 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 13 N -0.57 -23.70 1.88 -661.24 -1.24 -24.95 16 14 C 0.55 22.49 6.58 261.48 1.72 24.21 16 15 N -0.53 -18.23 4.21 -197.98 -0.83 -19.07 16 16 C 0.17 4.70 10.72 84.71 0.91 5.61 16 17 C -0.30 -8.03 10.16 22.44 0.23 -7.80 16 18 C 0.15 5.17 11.30 84.71 0.96 6.13 16 19 N -0.57 -24.51 6.40 -197.98 -1.27 -25.78 16 20 C 0.13 4.39 3.66 46.05 0.17 4.56 16 21 H 0.09 3.08 7.61 -2.39 -0.02 3.06 16 22 C 0.06 1.81 6.13 72.50 0.44 2.26 16 23 O -0.33 -9.74 7.90 -148.98 -1.18 -10.92 16 24 C 0.12 2.97 0.36 -10.76 0.00 2.97 16 25 C -0.13 -3.75 4.86 31.47 0.15 -3.60 16 26 C -0.17 -3.30 4.81 30.49 0.15 -3.15 16 27 C 0.07 1.28 6.46 86.36 0.56 1.83 16 28 N -0.69 -12.21 6.85 -513.59 -3.52 -15.73 16 29 C 0.07 1.32 6.46 86.36 0.56 1.88 16 30 C -0.13 -2.75 4.92 30.49 0.15 -2.60 16 31 H 0.04 1.53 6.52 -2.39 -0.02 1.51 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.60 8.14 -2.38 -0.02 1.59 16 34 H 0.07 3.66 5.95 -2.39 -0.01 3.65 16 35 H 0.05 2.68 5.82 -2.39 -0.01 2.66 16 36 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 38 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.17 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.07 1.98 7.24 -2.38 -0.02 1.97 16 41 H 0.05 2.08 7.96 -2.38 -0.02 2.07 16 42 H 0.06 1.91 6.10 -2.39 -0.01 1.89 16 43 H 0.08 2.03 7.84 -2.39 -0.02 2.01 16 44 H 0.08 1.34 8.13 -2.38 -0.02 1.32 16 45 H 0.07 1.37 6.93 -2.39 -0.02 1.35 16 46 H 0.06 1.35 7.91 -2.39 -0.02 1.33 16 47 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.35 4.98 8.85 -89.69 -0.79 4.19 16 49 H 0.06 1.42 7.91 -2.39 -0.02 1.40 16 50 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.07 1.69 6.56 -2.39 -0.02 1.67 16 52 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -63.69 385.17 1.93 -61.75 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.13 Total: 27.49 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 7.58 Total: 11.73 kcal Atomic # 7 Polarization: -130.40 SS G_CDS: -6.62 Total: -137.03 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.18 Total: -10.92 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.69 1.93 -61.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168312.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.907 kcal (2) G-P(sol) polarization free energy of solvation -63.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds