Wall clock time and date at job start Wed Apr 1 2020 03:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47217 * 2 1 4 4 H 1.09003 * 109.47054 * 58.02241 * 3 2 1 5 5 C 1.50697 * 109.47262 * 178.02769 * 3 2 1 6 6 H 1.07991 * 120.00234 * 114.64631 * 5 3 2 7 7 C 1.37878 * 119.99502 * 294.64826 * 5 3 2 8 8 N 1.31510 * 120.00310 * 347.93091 * 7 5 3 9 9 Si 1.86801 * 119.99830 * 167.65616 * 7 5 3 10 10 H 1.48504 * 109.47029 * 59.99638 * 9 7 5 11 11 H 1.48497 * 109.47451 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47162 * 300.00113 * 9 7 5 13 13 N 1.46908 * 109.47139 * 298.02834 * 3 2 1 14 14 C 1.47588 * 110.99525 * 296.29088 * 13 3 2 15 15 C 1.50692 * 108.48501 * 152.84312 * 14 13 3 16 16 O 1.44049 * 112.01934 * 93.54157 * 15 14 13 17 17 C 1.44489 * 116.01535 * 319.37648 * 16 15 14 18 18 C 1.50468 * 112.51863 * 318.95585 * 17 16 15 19 19 C 1.53769 * 111.43313 * 213.11161 * 18 17 16 20 20 C 1.54505 * 104.88452 * 120.80500 * 19 18 17 21 21 N 1.48608 * 104.60448 * 23.80474 * 20 19 18 22 22 C 1.38401 * 111.00372 * 201.17377 * 21 20 19 23 23 N 1.32492 * 119.21713 * 239.60715 * 22 21 20 24 24 C 1.32282 * 120.73925 * 179.71562 * 23 22 21 25 25 C 1.38597 * 119.19580 * 0.54373 * 24 23 22 26 26 C 1.38610 * 118.56100 * 359.72842 * 25 24 23 27 27 N 1.32275 * 119.19517 * 0.02562 * 26 25 24 28 28 C 1.48674 * 104.28477 * 320.77164 * 21 20 19 29 29 C 1.40591 * 110.99982 * 167.88695 * 13 3 2 30 30 H 1.09001 * 109.46978 * 299.99491 * 1 2 3 31 31 H 1.09001 * 109.47490 * 59.99527 * 1 2 3 32 32 H 1.09006 * 109.47353 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46458 * 240.00501 * 2 1 3 34 34 H 1.08997 * 109.47020 * 120.00572 * 2 1 3 35 35 H 0.96998 * 120.00297 * 1.53452 * 8 7 5 36 36 H 1.09008 * 109.63144 * 272.53650 * 14 13 3 37 37 H 1.08996 * 109.63574 * 33.13965 * 14 13 3 38 38 H 1.09004 * 108.96809 * 332.89377 * 15 14 13 39 39 H 1.08999 * 108.90258 * 214.15328 * 15 14 13 40 40 H 1.08998 * 108.87034 * 198.17719 * 17 16 15 41 41 H 1.09001 * 108.87324 * 79.74020 * 17 16 15 42 42 H 1.08996 * 110.35755 * 239.66292 * 19 18 17 43 43 H 1.09002 * 110.35357 * 1.85208 * 19 18 17 44 44 H 1.09004 * 110.40939 * 142.58188 * 20 19 18 45 45 H 1.09005 * 110.41634 * 265.02244 * 20 19 18 46 46 H 1.08004 * 120.40000 * 180.29191 * 24 23 22 47 47 H 1.08006 * 120.72158 * 179.70416 * 25 24 23 48 48 H 1.07999 * 120.39930 * 180.02562 * 26 25 24 49 49 H 1.09005 * 110.42851 * 280.32919 * 28 21 20 50 50 H 1.08998 * 110.43382 * 157.83159 * 28 21 20 51 51 H 1.09006 * 109.16071 * 307.91465 * 29 13 3 52 52 H 1.08998 * 109.16770 * 67.16144 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6480 1.9665 0.8717 5 6 3.5462 1.4428 0.0489 6 1 4.1136 1.8231 -0.7876 7 6 4.1998 0.9574 1.1617 8 7 3.5279 0.7169 2.2663 9 14 6.0385 0.6341 1.0978 10 1 6.7527 1.8980 0.7850 11 1 6.4965 0.1187 2.4130 12 1 6.3280 -0.3718 0.0444 13 7 1.5896 2.1211 -1.2226 14 6 2.1737 1.4913 -2.4228 15 6 1.2414 1.7206 -3.5843 16 8 1.5950 2.8971 -4.3365 17 6 2.0044 4.0456 -3.5613 18 6 1.1597 4.2416 -2.3316 19 6 1.0003 5.7327 -1.9912 20 6 -0.5230 5.9880 -2.0298 21 7 -1.1327 4.6549 -1.7854 22 6 -2.4372 4.6141 -2.2457 23 7 -3.4161 4.3509 -1.3926 24 6 -4.6743 4.3100 -1.7989 25 6 -4.9606 4.5352 -3.1362 26 6 -3.9121 4.8022 -4.0025 27 7 -2.6769 4.8334 -3.5302 28 6 -0.2698 3.7121 -2.5449 29 6 1.7988 3.5086 -1.1349 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.5688 0.8598 2.2914 36 1 3.1434 1.9408 -2.6372 37 1 2.2921 0.4210 -2.2539 38 1 0.2254 1.8338 -3.2061 39 1 1.2792 0.8536 -4.2439 40 1 1.9309 4.9364 -4.1851 41 1 3.0432 3.9144 -3.2582 42 1 1.3943 5.9386 -0.9960 43 1 1.5084 6.3476 -2.7341 44 1 -0.8112 6.6874 -1.2450 45 1 -0.8202 6.3684 -3.0071 46 1 -5.4685 4.0996 -1.0978 47 1 -5.9786 4.5030 -3.4955 48 1 -4.1013 4.9826 -5.0504 49 1 -0.5278 3.7291 -3.6039 50 1 -0.3654 2.7025 -2.1453 51 1 1.3562 3.8794 -0.2103 52 1 2.8701 3.7091 -1.1241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:01 Heat of formation + Delta-G solvation = 56.439546 kcal Electronic energy + Delta-G solvation = -33240.324555 eV Core-core repulsion = 29241.643839 eV Total energy + Delta-G solvation = -3998.680716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.46594 -40.32957 -37.66045 -36.41419 -33.99796 -33.80316 -32.86361 -31.36088 -30.76291 -29.13480 -28.83083 -26.32958 -26.02386 -24.78926 -24.31730 -23.32346 -22.52530 -21.72051 -20.95371 -19.24494 -18.92298 -17.75389 -17.73005 -16.88327 -16.25612 -16.00836 -15.87274 -15.27358 -15.03621 -14.82407 -14.50345 -14.10669 -14.00151 -13.76333 -13.71666 -13.25960 -13.20615 -12.71200 -12.59701 -12.35729 -12.24729 -11.94203 -11.85114 -11.72279 -11.19285 -11.17087 -11.07524 -10.99150 -10.82493 -10.70226 -10.58084 -10.42974 -10.25013 -10.14094 -10.00344 -9.65023 -9.63037 -9.58526 -9.55828 -9.09126 -8.94634 -8.56148 -8.29329 -7.06772 -6.35707 -4.10250 0.66285 0.94502 3.26666 3.40154 3.42338 3.52938 3.60341 4.02294 4.08322 4.39147 4.49899 4.50953 4.69194 4.74402 4.83896 4.90044 4.99177 5.10705 5.30322 5.33216 5.38517 5.43568 5.53525 5.59821 5.73113 5.76688 5.82639 5.85136 5.94796 5.97782 6.04177 6.09278 6.14312 6.20758 6.22391 6.32165 6.41726 6.45551 6.57030 6.60277 6.65599 6.70201 6.80361 6.91136 6.93111 7.12732 7.20396 7.38573 7.41548 7.50181 7.89611 8.03161 8.18528 8.40207 8.54135 8.81383 9.61664 10.98268 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.003545 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.736063 B = 7897.214424 C = 8457.570394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.210 3.790 4 H 0.032 0.968 5 C -0.628 4.628 6 H 0.048 0.952 7 C 0.030 3.970 8 N -0.903 5.903 9 Si 1.059 2.941 10 H -0.290 1.290 11 H -0.283 1.283 12 H -0.289 1.289 13 N -0.542 5.542 14 C 0.037 3.963 15 C 0.045 3.955 16 O -0.396 6.396 17 C 0.079 3.921 18 C -0.097 4.097 19 C -0.107 4.107 20 C 0.046 3.954 21 N -0.451 5.451 22 C 0.488 3.512 23 N -0.491 5.491 24 C 0.155 3.845 25 C -0.243 4.243 26 C 0.157 3.843 27 N -0.543 5.543 28 C 0.058 3.942 29 C 0.098 3.902 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.273 0.727 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.170 0.830 47 H 0.147 0.853 48 H 0.165 0.835 49 H 0.062 0.938 50 H 0.119 0.881 51 H 0.071 0.929 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.952 8.624 -12.311 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.104 3.896 4 H 0.049 0.951 5 C -0.666 4.666 6 H 0.067 0.933 7 C -0.176 4.176 8 N -0.538 5.538 9 Si 0.888 3.112 10 H -0.217 1.217 11 H -0.208 1.208 12 H -0.215 1.215 13 N -0.264 5.264 14 C -0.091 4.091 15 C -0.031 4.031 16 O -0.315 6.315 17 C 0.003 3.997 18 C -0.098 4.098 19 C -0.145 4.145 20 C -0.081 4.081 21 N -0.176 5.176 22 C 0.133 3.867 23 N -0.206 5.206 24 C -0.012 4.012 25 C -0.265 4.265 26 C -0.011 4.011 27 N -0.261 5.261 28 C -0.067 4.067 29 C -0.032 4.032 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.187 0.813 47 H 0.165 0.835 48 H 0.182 0.818 49 H 0.080 0.920 50 H 0.136 0.864 51 H 0.090 0.910 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -12.216 7.939 -10.688 18.069 hybrid contribution -1.321 0.763 -1.694 2.280 sum -13.537 8.702 -12.382 20.305 Atomic orbital electron populations 1.21696 0.97986 0.98715 1.01171 1.21680 0.93080 0.99436 1.00834 1.19318 0.93526 0.90165 0.86610 0.95054 1.22426 0.92097 1.46814 1.05304 0.93328 1.25620 1.06262 0.93748 0.91985 1.70797 1.10540 1.45869 1.26606 0.83689 0.75111 0.76494 0.75953 1.21703 1.20833 1.21516 1.59578 1.60130 1.02742 1.03996 1.22184 0.95574 1.01364 0.89982 1.22981 0.99748 0.86667 0.93737 1.88256 1.87973 1.21013 1.34298 1.22350 0.97123 0.88425 0.91845 1.21626 0.95482 0.95610 0.97114 1.22309 0.94549 0.94704 1.02980 1.23172 0.94479 0.89704 1.00750 1.62965 0.96541 1.06793 1.51266 1.21491 0.92506 0.89188 0.83544 1.68162 1.00076 1.13386 1.38962 1.23266 0.93348 0.90313 0.94268 1.22877 1.02126 1.05185 0.96310 1.23089 0.87259 0.90289 1.00487 1.68569 1.24383 1.16141 1.17035 1.23666 0.89346 0.97212 0.96490 1.20943 0.97582 0.88917 0.95737 0.93980 0.92954 0.95314 0.93688 0.92020 0.91610 0.93864 0.89389 0.91166 0.90368 0.90133 0.92845 0.89957 0.90763 0.90108 0.92439 0.81292 0.83538 0.81784 0.91955 0.86368 0.91029 0.95308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.77 37.16 0.36 -2.32 16 2 C -0.11 -2.49 5.01 -26.73 -0.13 -2.62 16 3 C 0.21 4.92 1.32 -68.86 -0.09 4.83 16 4 H 0.03 0.83 7.07 -51.93 -0.37 0.47 16 5 C -0.63 -16.40 7.22 -34.44 -0.25 -16.65 16 6 H 0.05 1.30 6.50 -52.49 -0.34 0.96 16 7 C 0.03 0.82 5.14 -17.82 -0.09 0.73 16 8 N -0.90 -26.10 13.02 55.43 0.72 -25.38 16 9 Si 1.06 24.65 29.92 -169.99 -5.09 19.56 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.54 -10.72 2.15 -233.06 -0.50 -11.22 16 14 C 0.04 0.69 4.14 -4.60 -0.02 0.67 16 15 C 0.04 0.73 6.15 36.00 0.22 0.96 16 16 O -0.40 -6.58 10.19 -35.23 -0.36 -6.94 16 17 C 0.08 1.21 5.56 35.89 0.20 1.40 16 18 C -0.10 -1.49 0.69 -154.26 -0.11 -1.60 16 19 C -0.11 -1.40 6.21 -25.54 -0.16 -1.56 16 20 C 0.05 0.62 6.41 -2.09 -0.01 0.60 16 21 N -0.45 -7.12 5.46 -171.03 -0.93 -8.05 16 22 C 0.49 7.35 6.46 -322.82 -2.09 5.27 16 23 N -0.49 -7.17 10.47 -13.93 -0.15 -7.31 16 24 C 0.16 1.57 11.30 -17.23 -0.19 1.38 16 25 C -0.24 -1.95 10.16 -39.31 -0.40 -2.35 16 26 C 0.16 1.51 11.30 -17.22 -0.19 1.32 16 27 N -0.54 -7.28 8.75 -13.93 -0.12 -7.40 16 28 C 0.06 0.94 3.37 -2.36 -0.01 0.93 16 29 C 0.10 1.86 3.58 -6.47 -0.02 1.83 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.99 7.66 -51.93 -0.40 0.59 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.98 6.06 -51.93 -0.31 0.67 16 34 H 0.06 1.53 6.60 -51.93 -0.34 1.18 16 35 H 0.27 7.87 6.26 -40.82 -0.26 7.62 16 36 H 0.04 0.88 6.12 -51.92 -0.32 0.56 16 37 H 0.09 1.73 5.68 -51.93 -0.29 1.44 16 38 H 0.07 1.18 4.36 -51.93 -0.23 0.95 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.07 7.38 -51.93 -0.38 0.68 16 41 H 0.05 0.86 6.67 -51.93 -0.35 0.51 16 42 H 0.08 1.10 7.51 -51.93 -0.39 0.71 16 43 H 0.07 0.82 7.34 -51.93 -0.38 0.44 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.75 7.42 -51.93 -0.39 0.37 16 46 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 47 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 48 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 49 H 0.06 1.04 6.42 -51.93 -0.33 0.70 16 50 H 0.12 2.16 4.83 -51.93 -0.25 1.91 16 51 H 0.07 1.46 7.52 -51.93 -0.39 1.07 16 52 H 0.03 0.60 6.93 -51.93 -0.36 0.24 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -30.78 380.15 -11.51 -42.29 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.83 Total: 5.89 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.98 Total: -7.17 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.98 Total: -59.36 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.36 Total: -6.94 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.09 Total: 19.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.78 -11.51 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.732 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds