Wall clock time and date at job start Wed Apr 1 2020 03:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47217 * 2 1 4 4 H 1.09003 * 109.47054 * 58.02241 * 3 2 1 5 5 C 1.50697 * 109.47262 * 178.02769 * 3 2 1 6 6 H 1.07991 * 120.00234 * 114.64631 * 5 3 2 7 7 C 1.37878 * 119.99502 * 294.64826 * 5 3 2 8 8 N 1.31510 * 120.00310 * 347.93091 * 7 5 3 9 9 Si 1.86801 * 119.99830 * 167.65616 * 7 5 3 10 10 H 1.48504 * 109.47029 * 59.99638 * 9 7 5 11 11 H 1.48497 * 109.47451 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47162 * 300.00113 * 9 7 5 13 13 N 1.46908 * 109.47139 * 298.02834 * 3 2 1 14 14 C 1.47588 * 110.99525 * 296.29088 * 13 3 2 15 15 C 1.50692 * 108.48501 * 152.84312 * 14 13 3 16 16 O 1.44049 * 112.01934 * 93.54157 * 15 14 13 17 17 C 1.44489 * 116.01535 * 319.37648 * 16 15 14 18 18 C 1.50468 * 112.51863 * 318.95585 * 17 16 15 19 19 C 1.53769 * 111.43313 * 213.11161 * 18 17 16 20 20 C 1.54505 * 104.88452 * 120.80500 * 19 18 17 21 21 N 1.48608 * 104.60448 * 23.80474 * 20 19 18 22 22 C 1.38401 * 111.00372 * 201.17377 * 21 20 19 23 23 N 1.32492 * 119.21713 * 239.60715 * 22 21 20 24 24 C 1.32282 * 120.73925 * 179.71562 * 23 22 21 25 25 C 1.38597 * 119.19580 * 0.54373 * 24 23 22 26 26 C 1.38610 * 118.56100 * 359.72842 * 25 24 23 27 27 N 1.32275 * 119.19517 * 0.02562 * 26 25 24 28 28 C 1.48674 * 104.28477 * 320.77164 * 21 20 19 29 29 C 1.40591 * 110.99982 * 167.88695 * 13 3 2 30 30 H 1.09001 * 109.46978 * 299.99491 * 1 2 3 31 31 H 1.09001 * 109.47490 * 59.99527 * 1 2 3 32 32 H 1.09006 * 109.47353 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46458 * 240.00501 * 2 1 3 34 34 H 1.08997 * 109.47020 * 120.00572 * 2 1 3 35 35 H 0.96998 * 120.00297 * 1.53452 * 8 7 5 36 36 H 1.09008 * 109.63144 * 272.53650 * 14 13 3 37 37 H 1.08996 * 109.63574 * 33.13965 * 14 13 3 38 38 H 1.09004 * 108.96809 * 332.89377 * 15 14 13 39 39 H 1.08999 * 108.90258 * 214.15328 * 15 14 13 40 40 H 1.08998 * 108.87034 * 198.17719 * 17 16 15 41 41 H 1.09001 * 108.87324 * 79.74020 * 17 16 15 42 42 H 1.08996 * 110.35755 * 239.66292 * 19 18 17 43 43 H 1.09002 * 110.35357 * 1.85208 * 19 18 17 44 44 H 1.09004 * 110.40939 * 142.58188 * 20 19 18 45 45 H 1.09005 * 110.41634 * 265.02244 * 20 19 18 46 46 H 1.08004 * 120.40000 * 180.29191 * 24 23 22 47 47 H 1.08006 * 120.72158 * 179.70416 * 25 24 23 48 48 H 1.07999 * 120.39930 * 180.02562 * 26 25 24 49 49 H 1.09005 * 110.42851 * 280.32919 * 28 21 20 50 50 H 1.08998 * 110.43382 * 157.83159 * 28 21 20 51 51 H 1.09006 * 109.16071 * 307.91465 * 29 13 3 52 52 H 1.08998 * 109.16770 * 67.16144 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6480 1.9665 0.8717 5 6 3.5462 1.4428 0.0489 6 1 4.1136 1.8231 -0.7876 7 6 4.1998 0.9574 1.1617 8 7 3.5279 0.7169 2.2663 9 14 6.0385 0.6341 1.0978 10 1 6.7527 1.8980 0.7850 11 1 6.4965 0.1187 2.4130 12 1 6.3280 -0.3718 0.0444 13 7 1.5896 2.1211 -1.2226 14 6 2.1737 1.4913 -2.4228 15 6 1.2414 1.7206 -3.5843 16 8 1.5950 2.8971 -4.3365 17 6 2.0044 4.0456 -3.5613 18 6 1.1597 4.2416 -2.3316 19 6 1.0003 5.7327 -1.9912 20 6 -0.5230 5.9880 -2.0298 21 7 -1.1327 4.6549 -1.7854 22 6 -2.4372 4.6141 -2.2457 23 7 -3.4161 4.3509 -1.3926 24 6 -4.6743 4.3100 -1.7989 25 6 -4.9606 4.5352 -3.1362 26 6 -3.9121 4.8022 -4.0025 27 7 -2.6769 4.8334 -3.5302 28 6 -0.2698 3.7121 -2.5449 29 6 1.7988 3.5086 -1.1349 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.5688 0.8598 2.2914 36 1 3.1434 1.9408 -2.6372 37 1 2.2921 0.4210 -2.2539 38 1 0.2254 1.8338 -3.2061 39 1 1.2792 0.8536 -4.2439 40 1 1.9309 4.9364 -4.1851 41 1 3.0432 3.9144 -3.2582 42 1 1.3943 5.9386 -0.9960 43 1 1.5084 6.3476 -2.7341 44 1 -0.8112 6.6874 -1.2450 45 1 -0.8202 6.3684 -3.0071 46 1 -5.4685 4.0996 -1.0978 47 1 -5.9786 4.5030 -3.4955 48 1 -4.1013 4.9826 -5.0504 49 1 -0.5278 3.7291 -3.6039 50 1 -0.3654 2.7025 -2.1453 51 1 1.3562 3.8794 -0.2103 52 1 2.8701 3.7091 -1.1241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:00 Heat of formation + Delta-G solvation = 37.460117 kcal Electronic energy + Delta-G solvation = -33241.147565 eV Core-core repulsion = 29241.643839 eV Total energy + Delta-G solvation = -3999.503725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.49644 -41.53523 -39.01934 -37.90854 -35.36985 -34.69185 -34.48571 -33.11730 -31.84565 -30.34171 -30.23111 -28.00635 -27.43412 -25.99288 -25.44420 -24.84159 -23.89095 -22.96836 -22.36502 -20.99458 -20.23220 -19.03657 -18.65932 -18.46379 -17.62147 -17.41447 -16.92863 -16.53241 -16.15343 -15.90514 -15.76568 -15.67012 -15.41139 -15.26212 -14.97085 -14.56363 -14.37045 -14.20948 -14.12267 -13.92051 -13.61147 -13.46789 -13.26782 -13.01702 -12.84530 -12.61079 -12.48944 -12.40745 -12.07571 -12.03462 -11.94352 -11.89303 -11.84736 -11.81644 -11.51249 -11.37886 -11.17076 -10.91801 -10.57161 -10.50303 -10.40212 -10.27684 -9.60121 -8.89440 -8.48979 -6.29665 -0.15289 0.18370 1.49610 1.55436 1.74671 2.30860 2.54710 2.68140 2.82029 3.11943 3.18586 3.24596 3.48253 3.53023 3.76849 3.79785 3.89280 4.07299 4.12685 4.18846 4.23249 4.24534 4.34119 4.34486 4.39430 4.46970 4.54853 4.57127 4.64365 4.69214 4.71258 4.74934 4.80374 4.86203 4.90991 4.96114 5.00034 5.05727 5.11328 5.11709 5.19444 5.24076 5.31650 5.35295 5.48389 5.60682 5.63102 5.79432 5.94071 6.08462 6.15154 6.28912 6.53793 6.61717 6.74810 7.16189 7.49951 8.78040 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.003545 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.736063 B = 7897.214424 C = 8457.570394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.215 3.785 4 H -0.006 1.006 5 C -0.626 4.626 6 H 0.041 0.959 7 C -0.017 4.017 8 N -0.928 5.928 9 Si 1.102 2.898 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.532 5.532 14 C 0.044 3.956 15 C 0.054 3.946 16 O -0.399 6.399 17 C 0.079 3.921 18 C -0.086 4.086 19 C -0.102 4.102 20 C 0.052 3.948 21 N -0.473 5.473 22 C 0.461 3.539 23 N -0.533 5.533 24 C 0.140 3.860 25 C -0.217 4.217 26 C 0.145 3.855 27 N -0.561 5.561 28 C 0.076 3.924 29 C 0.106 3.894 30 H 0.030 0.970 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.032 0.968 35 H 0.260 0.740 36 H 0.027 0.973 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.199 0.801 47 H 0.192 0.808 48 H 0.200 0.800 49 H 0.060 0.940 50 H 0.093 0.907 51 H 0.047 0.953 52 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.630 9.259 -15.085 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.011 0.989 5 C -0.665 4.665 6 H 0.059 0.941 7 C -0.218 4.218 8 N -0.564 5.564 9 Si 0.925 3.075 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.254 5.254 14 C -0.084 4.084 15 C -0.022 4.022 16 O -0.319 6.319 17 C 0.003 3.997 18 C -0.088 4.088 19 C -0.141 4.141 20 C -0.074 4.074 21 N -0.198 5.198 22 C 0.106 3.894 23 N -0.249 5.249 24 C -0.025 4.025 25 C -0.238 4.238 26 C -0.022 4.022 27 N -0.280 5.280 28 C -0.050 4.050 29 C -0.025 4.025 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.060 0.940 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.216 0.784 47 H 0.209 0.791 48 H 0.217 0.783 49 H 0.078 0.922 50 H 0.111 0.889 51 H 0.066 0.934 52 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -13.928 8.589 -13.492 21.208 hybrid contribution -0.957 0.611 -0.858 1.423 sum -14.885 9.200 -14.350 22.630 Atomic orbital electron populations 1.21545 0.95583 1.00158 1.00887 1.21502 0.95123 0.97927 0.99575 1.19104 0.92097 0.90967 0.87001 0.98851 1.22670 0.93567 1.45673 1.04621 0.94103 1.26864 1.09755 0.93447 0.91733 1.70905 1.09947 1.47970 1.27614 0.83115 0.71004 0.77202 0.76132 1.20394 1.21183 1.19841 1.59582 1.59718 1.03051 1.03084 1.22163 0.95531 1.00422 0.90267 1.22882 0.98693 0.87637 0.93024 1.88250 1.87945 1.21203 1.34473 1.22441 0.96184 0.89068 0.92028 1.21514 0.95105 0.96691 0.95480 1.22324 0.94973 0.93246 1.03511 1.23147 0.94105 0.89045 1.01151 1.62827 0.97538 1.07507 1.51937 1.21348 0.92104 0.91510 0.84486 1.68091 1.01785 1.14783 1.40201 1.23900 0.92499 0.89937 0.96195 1.23323 1.03837 1.01723 0.94912 1.23813 0.86481 0.89511 1.02377 1.68515 1.26483 1.16869 1.16153 1.23312 0.89479 0.96236 0.96009 1.20864 0.96144 0.88687 0.96756 0.95079 0.92347 0.92928 0.93131 0.94890 0.92968 0.95473 0.90207 0.91255 0.88140 0.87194 0.93996 0.90672 0.87882 0.89819 0.91791 0.78411 0.79063 0.78302 0.92189 0.88942 0.93426 0.97768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.77 71.98 0.70 -4.18 16 2 C -0.10 -4.72 5.01 30.59 0.15 -4.57 16 3 C 0.22 10.62 1.32 44.17 0.06 10.68 16 4 H -0.01 -0.36 7.07 -2.39 -0.02 -0.38 16 5 C -0.63 -33.97 7.22 25.60 0.18 -33.78 16 6 H 0.04 2.24 6.50 -2.91 -0.02 2.23 16 7 C -0.02 -0.98 5.14 84.66 0.44 -0.54 16 8 N -0.93 -55.75 13.02 21.45 0.28 -55.48 16 9 Si 1.10 50.35 29.92 68.60 2.05 52.40 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 N -0.53 -21.92 2.15 -891.26 -1.92 -23.83 16 14 C 0.04 1.66 4.14 85.42 0.35 2.01 16 15 C 0.05 1.71 6.15 71.23 0.44 2.15 16 16 O -0.40 -12.65 10.19 -148.98 -1.52 -14.17 16 17 C 0.08 2.32 5.56 71.16 0.40 2.71 16 18 C -0.09 -2.66 0.69 -52.02 -0.04 -2.70 16 19 C -0.10 -2.61 6.21 31.37 0.19 -2.42 16 20 C 0.05 1.38 6.41 86.48 0.55 1.93 16 21 N -0.47 -15.08 5.46 -695.01 -3.80 -18.87 16 22 C 0.46 13.71 6.46 261.49 1.69 15.39 16 23 N -0.53 -15.32 10.47 -197.99 -2.07 -17.40 16 24 C 0.14 2.54 11.30 84.71 0.96 3.50 16 25 C -0.22 -2.68 10.16 22.44 0.23 -2.45 16 26 C 0.14 2.34 11.30 84.71 0.96 3.30 16 27 N -0.56 -14.14 8.75 -197.99 -1.73 -15.87 16 28 C 0.08 2.43 3.37 86.27 0.29 2.72 16 29 C 0.11 4.19 3.58 87.85 0.31 4.51 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 2.21 7.66 -2.39 -0.02 2.19 16 32 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.05 2.24 6.06 -2.39 -0.01 2.22 16 34 H 0.03 1.69 6.60 -2.39 -0.02 1.67 16 35 H 0.26 15.90 6.26 -92.71 -0.58 15.32 16 36 H 0.03 1.12 6.12 -2.38 -0.01 1.10 16 37 H 0.08 3.16 5.68 -2.39 -0.01 3.15 16 38 H 0.07 2.29 4.36 -2.38 -0.01 2.28 16 39 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.11 2.61 7.38 -2.39 -0.02 2.59 16 41 H 0.04 1.33 6.67 -2.39 -0.02 1.32 16 42 H 0.07 2.03 7.51 -2.39 -0.02 2.01 16 43 H 0.10 2.04 7.34 -2.39 -0.02 2.02 16 44 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.06 1.59 7.42 -2.38 -0.02 1.57 16 46 H 0.20 2.11 8.06 -2.91 -0.02 2.09 16 47 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 48 H 0.20 1.64 8.06 -2.91 -0.02 1.61 16 49 H 0.06 1.95 6.42 -2.38 -0.02 1.93 16 50 H 0.09 3.44 4.83 -2.39 -0.01 3.43 16 51 H 0.05 2.09 7.52 -2.38 -0.02 2.07 16 52 H 0.00 0.19 6.93 -2.39 -0.02 0.17 16 Total: -1.00 -71.07 380.15 0.29 -70.77 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 1.12 Total: 24.17 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 7.87 Total: -1.73 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -9.24 Total: -131.45 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -1.52 Total: -14.17 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.40 kcal Total: -71.07 0.29 -70.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.232 kcal (2) G-P(sol) polarization free energy of solvation -71.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds