Wall clock time and date at job start Wed Apr 1 2020 03:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47128 * 2 1 4 4 H 1.09000 * 109.47434 * 52.72117 * 3 2 1 5 5 C 1.50696 * 109.47269 * 172.72540 * 3 2 1 6 6 H 1.08001 * 120.00479 * 114.10065 * 5 3 2 7 7 C 1.37881 * 120.00106 * 294.09602 * 5 3 2 8 8 N 1.31514 * 119.99647 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00215 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46799 * 60.00160 * 9 7 5 11 11 H 1.48501 * 109.47097 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47214 * 300.00536 * 9 7 5 13 13 N 1.46898 * 109.46887 * 292.72194 * 3 2 1 14 14 C 1.46978 * 110.99887 * 75.89865 * 13 3 2 15 15 C 1.53406 * 109.65348 * 53.27572 * 14 13 3 16 16 N 1.46531 * 108.23587 * 49.67637 * 15 14 13 17 17 C 1.36032 * 128.67259 * 163.57495 * 16 15 14 18 18 C 1.34938 * 106.64630 * 180.20872 * 17 16 15 19 19 C 1.50695 * 125.95642 * 179.97438 * 18 17 16 20 20 N 1.46501 * 109.47152 * 95.00016 * 19 18 17 21 21 C 1.34774 * 120.00208 * 180.02562 * 20 19 18 22 22 O 1.21284 * 119.99715 * 359.97438 * 21 20 19 23 23 C 1.50696 * 119.99973 * 180.02562 * 21 20 19 24 24 C 1.53786 * 113.61084 * 179.97438 * 23 21 20 25 25 C 1.53782 * 87.08318 * 89.19740 * 24 23 21 26 26 C 1.53780 * 113.68820 * 277.52892 * 23 21 20 27 27 N 1.34373 * 108.08716 * 0.23041 * 18 17 16 28 28 C 1.29895 * 109.19874 * 359.50186 * 27 18 17 29 29 C 1.47325 * 111.00219 * 200.08021 * 13 3 2 30 30 H 1.08998 * 109.47089 * 207.11697 * 1 2 3 31 31 H 1.08997 * 109.47377 * 327.12200 * 1 2 3 32 32 H 1.09001 * 109.47115 * 87.12359 * 1 2 3 33 33 H 1.09003 * 109.47427 * 239.99481 * 2 1 3 34 34 H 1.09004 * 109.47380 * 119.99498 * 2 1 3 35 35 H 0.97005 * 119.99441 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.44161 * 293.21926 * 14 13 3 37 37 H 1.09000 * 109.41219 * 173.31627 * 14 13 3 38 38 H 1.08996 * 109.71401 * 289.99314 * 15 14 13 39 39 H 1.08999 * 109.71000 * 169.36249 * 15 14 13 40 40 H 1.08007 * 126.67932 * 0.24812 * 17 16 15 41 41 H 1.09001 * 109.47375 * 335.00288 * 19 18 17 42 42 H 1.09004 * 109.47136 * 214.99738 * 19 18 17 43 43 H 0.97003 * 119.99666 * 359.97438 * 20 19 18 44 44 H 1.08991 * 112.85379 * 48.80081 * 23 21 20 45 45 H 1.08992 * 113.61815 * 334.64789 * 24 23 21 46 46 H 1.09003 * 113.68673 * 203.75551 * 24 23 21 47 47 H 1.09003 * 113.61600 * 139.97339 * 25 24 23 48 48 H 1.08993 * 113.61622 * 270.88559 * 25 24 23 49 49 H 1.09002 * 113.61339 * 156.32425 * 26 23 21 50 50 H 1.09000 * 113.61713 * 25.42672 * 26 23 21 51 51 H 1.09004 * 109.73806 * 45.75787 * 29 13 3 52 52 H 1.08997 * 109.74070 * 166.41010 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5742 1.9926 0.8177 5 6 3.5361 1.4464 0.1799 6 1 4.1752 1.7933 -0.6186 7 6 4.0893 1.0071 1.3640 8 7 3.3111 0.5842 2.3363 9 14 5.9439 1.0112 1.5868 10 1 6.4565 2.3976 1.4440 11 1 6.2814 0.4948 2.9376 12 1 6.5683 0.1439 0.5557 13 7 1.6988 2.0824 -1.2775 14 6 0.2735 2.4382 -1.3243 15 6 -0.0896 3.2771 -0.0923 16 7 0.8918 4.3582 0.0317 17 6 0.8097 5.5006 0.7656 18 6 1.9558 6.1802 0.5524 19 6 2.3206 7.5116 1.1567 20 7 3.1245 7.2968 2.3625 21 6 3.5671 8.3523 3.0742 22 8 3.3002 9.4799 2.7162 23 6 4.3945 8.1313 4.3141 24 6 4.8209 9.4346 5.0105 25 6 3.5090 9.3453 5.8079 26 6 3.5587 7.8264 5.5684 27 7 2.7128 5.4653 -0.2971 28 6 2.0876 4.3701 -0.6083 29 6 2.5496 3.2601 -1.5220 30 1 -0.3633 -0.9147 0.4684 31 1 -0.3634 0.8630 0.5578 32 1 -0.3633 0.0516 -1.0264 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.7003 0.2748 3.1692 36 1 -0.3274 1.5288 -1.3338 37 1 0.0734 3.0146 -2.2275 38 1 -0.0619 2.6515 0.7997 39 1 -1.0872 3.6986 -0.2156 40 1 -0.0125 5.8044 1.3967 41 1 1.4115 8.0534 1.4179 42 1 2.8954 8.0927 0.4355 43 1 3.3376 6.3949 2.6490 44 1 5.2156 7.4323 4.1561 45 1 4.8669 10.2929 4.3403 46 1 5.7141 9.3300 5.6263 47 1 3.6151 9.6257 6.8559 48 1 2.6673 9.8368 5.3202 49 1 4.1070 7.2810 6.3365 50 1 2.5858 7.3867 5.3486 51 1 3.5893 3.0143 -1.3061 52 1 2.4539 3.5740 -2.5613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168918.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:38 Heat of formation + Delta-G solvation = 69.282325 kcal Electronic energy + Delta-G solvation = -31703.578834 eV Core-core repulsion = 27705.455023 eV Total energy + Delta-G solvation = -3998.123811 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.05912 -40.32024 -38.21708 -37.27641 -34.83745 -33.75324 -32.75220 -31.88166 -30.02569 -29.23001 -27.39419 -26.78312 -25.80580 -25.51988 -24.22224 -23.16985 -21.88641 -21.41256 -20.46348 -20.09738 -19.06043 -18.35105 -17.03268 -16.72005 -16.45381 -15.97742 -15.73209 -15.48834 -15.29267 -14.74677 -14.56249 -14.30535 -14.29382 -13.73004 -13.49288 -13.34930 -13.13420 -12.78672 -12.60671 -12.50527 -12.38581 -12.16807 -12.07242 -11.97635 -11.81284 -11.69464 -11.22946 -11.08838 -10.93467 -10.90005 -10.61839 -10.51091 -10.49615 -10.03098 -9.95280 -9.77452 -9.59719 -9.51595 -9.11816 -8.92780 -8.91115 -8.55603 -7.87355 -7.60632 -6.16754 -4.21021 2.32646 2.69072 3.09686 3.14448 3.26381 3.29877 3.34562 3.77391 4.30875 4.42889 4.51293 4.58834 4.68960 4.70350 4.74689 4.90111 5.11035 5.15136 5.17574 5.21354 5.31278 5.41125 5.49715 5.52384 5.53570 5.67270 5.72849 5.76509 5.83011 5.94260 5.96304 6.00211 6.00577 6.04142 6.09575 6.13964 6.26242 6.32035 6.47321 6.54606 6.70417 6.72509 6.88945 7.03172 7.08443 7.28086 7.44450 7.57653 7.65454 7.66864 7.83116 8.06787 8.31893 8.32785 8.55251 8.83117 9.44875 10.90889 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.003437 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.594504 B = 8145.465167 C = 9661.071488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C 0.209 3.791 4 H 0.016 0.984 5 C -0.518 4.518 6 H 0.068 0.932 7 C 0.068 3.932 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.524 5.524 14 C 0.022 3.978 15 C 0.063 3.937 16 N -0.448 5.448 17 C -0.036 4.036 18 C -0.037 4.037 19 C 0.216 3.784 20 N -0.717 5.717 21 C 0.532 3.468 22 O -0.547 6.547 23 C -0.143 4.143 24 C -0.121 4.121 25 C -0.141 4.141 26 C -0.125 4.125 27 N -0.479 5.479 28 C 0.218 3.782 29 C 0.132 3.868 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.262 0.738 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.167 0.833 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.406 0.594 44 H 0.100 0.900 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.071 0.929 51 H 0.130 0.870 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 8.391 1.946 10.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C 0.104 3.896 4 H 0.034 0.966 5 C -0.556 4.556 6 H 0.086 0.914 7 C -0.135 4.135 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.246 5.246 14 C -0.107 4.107 15 C -0.061 4.061 16 N -0.129 5.129 17 C -0.172 4.172 18 C -0.166 4.166 19 C 0.092 3.908 20 N -0.368 5.368 21 C 0.318 3.682 22 O -0.425 6.425 23 C -0.164 4.164 24 C -0.158 4.158 25 C -0.178 4.178 26 C -0.163 4.163 27 N -0.198 5.198 28 C -0.048 4.048 29 C 0.002 3.998 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.184 0.816 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.240 0.760 44 H 0.118 0.882 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.086 0.914 48 H 0.102 0.898 49 H 0.109 0.891 50 H 0.089 0.911 51 H 0.148 0.852 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.035 8.870 1.188 10.268 hybrid contribution -0.036 -0.259 1.476 1.499 sum -5.071 8.610 2.664 10.341 Atomic orbital electron populations 1.22222 0.99762 0.99932 0.99152 1.21540 0.91322 0.99456 1.02243 1.19489 0.96040 0.90763 0.83303 0.96649 1.21177 0.90788 1.43551 1.00051 0.91403 1.24870 0.98092 0.94833 0.95706 1.69903 1.34839 1.42825 1.05149 0.86647 0.85501 0.78687 0.77263 1.20018 1.21357 1.20022 1.62571 1.00490 1.23167 1.38360 1.23066 0.93232 0.99761 0.94636 1.22813 0.91129 0.88448 1.03676 1.45292 1.16258 1.16277 1.35078 1.22131 1.02339 0.89416 1.03290 1.20450 0.93505 0.98894 1.03757 1.19247 0.94904 0.91324 0.85342 1.46124 1.53977 1.09675 1.27029 1.20027 0.79483 0.84572 0.84084 1.90659 1.58232 1.23138 1.70499 1.22435 0.99585 1.01197 0.93232 1.22736 0.97613 0.96928 0.98551 1.22890 0.98652 0.96005 1.00255 1.22833 1.00169 0.97360 0.95906 1.69860 1.30181 1.04354 1.15359 1.24485 0.83558 0.97113 0.99644 1.21236 1.01648 0.82721 0.94170 0.94523 0.93911 0.93517 0.93546 0.89572 0.92843 0.86913 0.91287 0.88657 0.90044 0.81557 0.90835 0.90563 0.75963 0.88157 0.90061 0.89620 0.91413 0.89817 0.89083 0.91073 0.85231 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.32 37.15 0.31 -2.25 16 2 C -0.11 -2.25 5.49 -26.73 -0.15 -2.40 16 3 C 0.21 4.59 1.17 -68.87 -0.08 4.51 16 4 H 0.02 0.39 5.33 -51.93 -0.28 0.11 16 5 C -0.52 -12.92 7.62 -34.44 -0.26 -13.19 16 6 H 0.07 1.70 5.59 -52.49 -0.29 1.40 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -23.69 11.76 55.43 0.65 -23.04 16 9 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.52 -9.79 4.82 -228.59 -1.10 -10.89 16 14 C 0.02 0.33 5.31 -3.57 -0.02 0.31 16 15 C 0.06 0.94 5.94 -3.82 -0.02 0.92 16 16 N -0.45 -7.74 2.98 -113.69 -0.34 -8.07 16 17 C -0.04 -0.57 11.59 -16.86 -0.20 -0.77 16 18 C -0.04 -0.63 6.47 -82.65 -0.53 -1.16 16 19 C 0.22 3.27 6.21 -5.20 -0.03 3.24 16 20 N -0.72 -10.48 5.55 -61.47 -0.34 -10.82 16 21 C 0.53 7.77 7.09 -10.99 -0.08 7.69 16 22 O -0.55 -9.50 15.75 5.55 0.09 -9.41 16 23 C -0.14 -1.67 4.34 -90.96 -0.39 -2.07 16 24 C -0.12 -1.28 7.45 -25.92 -0.19 -1.47 16 25 C -0.14 -1.42 7.74 -25.89 -0.20 -1.62 16 26 C -0.12 -1.26 7.67 -25.89 -0.20 -1.46 16 27 N -0.48 -9.53 11.24 -6.85 -0.08 -9.61 16 28 C 0.22 4.21 7.31 -155.22 -1.13 3.08 16 29 C 0.13 2.49 5.84 -4.59 -0.03 2.46 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.69 5.18 -51.93 -0.27 0.42 16 32 H 0.05 0.68 6.20 -51.93 -0.32 0.36 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 2.08 6.42 -51.93 -0.33 1.75 16 35 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.11 1.56 4.13 -51.93 -0.21 1.34 16 37 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.10 1.58 4.99 -51.93 -0.26 1.32 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.17 2.12 8.06 -52.48 -0.42 1.70 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.41 5.96 8.46 -40.82 -0.35 5.61 16 44 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.08 0.98 7.43 -51.93 -0.39 0.60 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 51 H 0.13 2.72 5.04 -51.93 -0.26 2.46 16 52 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -29.57 394.61 -11.50 -41.07 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -8.01 Total: 11.88 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.30 Total: -2.52 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -1.21 Total: -62.44 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.57 -11.50 -41.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168918.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.354 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds