Wall clock time and date at job start Wed Apr 1 2020 03:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47607 * 2 1 4 4 H 1.08991 * 109.47704 * 173.76830 * 3 2 1 5 5 C 1.50704 * 109.46824 * 53.76759 * 3 2 1 6 6 H 1.07999 * 120.00287 * 240.00221 * 5 3 2 7 7 C 1.37885 * 119.99587 * 59.73263 * 5 3 2 8 8 N 1.31515 * 119.99929 * 0.26681 * 7 5 3 9 9 Si 1.86800 * 119.99805 * 180.27322 * 7 5 3 10 10 H 1.48508 * 109.46936 * 89.99672 * 9 7 5 11 11 H 1.48494 * 109.47067 * 209.99654 * 9 7 5 12 12 H 1.48494 * 109.47083 * 329.99932 * 9 7 5 13 13 N 1.46904 * 109.46983 * 293.77719 * 3 2 1 14 14 C 1.47426 * 111.00056 * 71.79857 * 13 3 2 15 15 C 1.52014 * 107.03893 * 154.26906 * 14 13 3 16 16 N 1.30078 * 127.02672 * 244.53810 * 15 14 13 17 17 C 1.34418 * 108.99229 * 179.81451 * 16 15 14 18 18 C 1.35000 * 108.05923 * 0.07706 * 17 16 15 19 19 N 1.34554 * 124.20610 * 64.53719 * 15 14 13 20 20 C 1.47614 * 124.50936 * 0.38597 * 19 15 14 21 21 C 1.53707 * 106.98095 * 295.24322 * 20 19 15 22 22 H 1.08999 * 109.20490 * 319.13467 * 21 20 19 23 23 C 1.52999 * 109.20290 * 199.78250 * 21 20 19 24 24 N 1.46497 * 109.47596 * 65.00150 * 23 21 20 25 25 C 1.46758 * 124.34959 * 89.99409 * 24 23 21 26 26 C 1.54482 * 105.47306 * 197.02093 * 25 24 23 27 27 C 1.54631 * 101.76375 * 334.58480 * 26 25 24 28 28 C 1.34421 * 124.34838 * 269.69878 * 24 23 21 29 29 O 1.21284 * 124.94238 * 359.57892 * 28 24 23 30 30 C 1.44777 * 110.99718 * 305.42430 * 13 3 2 31 31 H 1.08990 * 109.47344 * 198.82221 * 1 2 3 32 32 H 1.09007 * 109.47087 * 318.82446 * 1 2 3 33 33 H 1.09004 * 109.46788 * 78.81474 * 1 2 3 34 34 H 1.08998 * 109.47640 * 240.00139 * 2 1 3 35 35 H 1.09001 * 109.47113 * 119.99927 * 2 1 3 36 36 H 0.97003 * 119.99373 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.93974 * 273.64674 * 14 13 3 38 38 H 1.08996 * 109.94334 * 34.89110 * 14 13 3 39 39 H 1.08006 * 125.96733 * 180.12365 * 17 16 15 40 40 H 1.08006 * 126.79338 * 180.02562 * 18 17 16 41 41 H 1.08994 * 109.95150 * 54.61414 * 20 19 15 42 42 H 1.08999 * 109.94777 * 175.78789 * 20 19 15 43 43 H 1.09003 * 109.47081 * 185.00271 * 23 21 20 44 44 H 1.08998 * 109.47314 * 304.99684 * 23 21 20 45 45 H 1.08995 * 110.25049 * 316.02031 * 25 24 23 46 46 H 1.09004 * 110.24360 * 78.02589 * 25 24 23 47 47 H 1.08997 * 110.97403 * 92.70625 * 26 25 24 48 48 H 1.09006 * 110.97019 * 216.43104 * 26 25 24 49 49 H 1.09000 * 110.48476 * 143.47467 * 27 26 25 50 50 H 1.09004 * 110.48836 * 265.98516 * 27 26 25 51 51 H 1.09000 * 108.02624 * 320.85355 * 30 13 3 52 52 H 1.08999 * 108.02896 * 77.27219 * 30 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1243 1.4445 0.1115 5 6 1.4158 2.1960 1.1461 6 1 0.8100 3.0688 0.9524 7 6 1.6136 1.7678 2.4418 8 7 2.3513 0.7050 2.6777 9 14 0.8335 2.6974 3.8620 10 1 -0.5109 2.1330 4.1439 11 1 1.6886 2.5659 5.0688 12 1 0.7025 4.1321 3.5020 13 7 1.6769 2.0903 -1.2675 14 6 0.2286 2.3593 -1.3273 15 6 0.0324 3.5334 -2.2727 16 7 -0.4292 4.7120 -1.9728 17 6 -0.4460 5.4706 -3.0822 18 6 0.0234 4.7258 -4.1057 19 7 0.3210 3.5031 -3.5866 20 6 0.8601 2.3271 -4.2975 21 6 2.2560 2.0519 -3.7158 22 1 2.7733 2.9988 -3.5617 23 6 3.0533 1.1978 -4.7036 24 7 3.2857 1.9609 -5.9324 25 6 4.4509 2.8225 -6.1642 26 6 4.0627 3.7298 -7.3527 27 6 3.0039 2.8658 -8.0762 28 6 2.4619 1.9575 -6.9946 29 8 1.4324 1.3211 -7.0732 30 6 2.1534 1.3217 -2.3981 31 1 -0.3633 -0.9726 0.3315 32 1 -0.3634 0.7736 0.6766 33 1 -0.3633 0.1994 -1.0082 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.4907 0.4040 3.5893 37 1 -0.2967 1.4835 -1.7083 38 1 -0.1433 2.6149 -0.3352 39 1 -0.7765 6.4970 -3.1439 40 1 0.1393 5.0381 -5.1331 41 1 0.2128 1.4653 -4.1349 42 1 0.9353 2.5394 -5.3639 43 1 4.0103 0.9256 -4.2585 44 1 2.4915 0.2937 -4.9382 45 1 4.6556 3.4261 -5.2801 46 1 5.3217 2.2185 -6.4194 47 1 3.6290 4.6666 -7.0030 48 1 4.9214 3.9166 -7.9977 49 1 2.2116 3.4944 -8.4827 50 1 3.4676 2.2780 -8.8684 51 1 3.1412 0.9335 -2.1499 52 1 1.4848 0.4717 -2.5340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168928.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:52 Heat of formation + Delta-G solvation = 58.334136 kcal Electronic energy + Delta-G solvation = -32869.841490 eV Core-core repulsion = 28871.242930 eV Total energy + Delta-G solvation = -3998.598560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.84362 -40.71334 -38.36291 -36.71225 -35.80005 -33.01822 -32.75874 -31.01670 -30.59544 -29.45749 -27.88570 -26.89810 -26.37105 -25.98018 -24.23131 -22.43774 -22.18329 -21.03991 -20.58852 -19.64778 -19.12315 -18.96437 -17.22247 -17.04642 -16.72236 -16.23317 -15.59173 -15.24380 -14.94671 -14.67191 -14.40561 -14.15872 -14.02611 -13.91250 -13.63057 -13.51249 -13.41435 -13.07198 -12.92248 -12.71461 -12.54975 -12.19759 -12.04363 -12.00269 -11.79024 -11.65011 -11.36408 -11.12527 -11.02318 -10.89958 -10.81117 -10.57193 -10.16335 -10.09686 -10.00949 -9.88779 -9.55588 -9.40057 -9.19319 -8.96207 -8.86108 -8.41204 -7.86937 -7.21445 -6.04564 -4.06995 2.29157 2.54180 2.71146 3.19045 3.33214 3.40262 3.47704 3.66424 4.00778 4.11463 4.39461 4.44210 4.57112 4.59526 4.71523 4.79287 4.97167 5.11546 5.14120 5.17988 5.24671 5.28383 5.32531 5.35419 5.42083 5.43949 5.47113 5.60480 5.62264 5.76079 5.82875 5.86059 6.05894 6.13437 6.21627 6.31057 6.36080 6.43981 6.53502 6.66640 6.82112 6.84004 6.86848 7.19200 7.23449 7.34377 7.50503 7.60866 7.68261 7.79531 7.88662 7.97622 8.28232 8.53505 8.70743 8.98368 9.57578 11.02242 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.003486 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.055722 B = 8031.306224 C = 8884.237568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.148 4.148 3 C 0.224 3.776 4 H 0.044 0.956 5 C -0.506 4.506 6 H 0.071 0.929 7 C 0.066 3.934 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.535 5.535 14 C 0.132 3.868 15 C 0.236 3.764 16 N -0.491 5.491 17 C -0.037 4.037 18 C -0.075 4.075 19 N -0.452 5.452 20 C 0.112 3.888 21 C -0.116 4.116 22 H 0.088 0.912 23 C 0.133 3.867 24 N -0.616 5.616 25 C 0.099 3.901 26 C -0.132 4.132 27 C -0.156 4.156 28 C 0.512 3.488 29 O -0.531 6.531 30 C 0.067 3.933 31 H 0.024 0.976 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.017 0.983 35 H 0.094 0.906 36 H 0.260 0.740 37 H 0.055 0.945 38 H 0.131 0.869 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.101 0.899 50 H 0.103 0.897 51 H 0.071 0.929 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 2.507 -20.511 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.187 4.187 3 C 0.119 3.881 4 H 0.061 0.939 5 C -0.544 4.544 6 H 0.089 0.911 7 C -0.136 4.136 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.259 5.259 14 C 0.003 3.997 15 C -0.028 4.028 16 N -0.209 5.209 17 C -0.185 4.185 18 C -0.208 4.208 19 N -0.134 5.134 20 C -0.010 4.010 21 C -0.136 4.136 22 H 0.106 0.894 23 C 0.010 3.990 24 N -0.350 5.350 25 C -0.024 4.024 26 C -0.170 4.170 27 C -0.196 4.196 28 C 0.301 3.699 29 O -0.408 6.408 30 C -0.063 4.063 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.035 0.965 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.149 0.851 39 H 0.178 0.822 40 H 0.179 0.821 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.109 0.891 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.089 0.911 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.249 2.589 -19.640 20.261 hybrid contribution -0.333 -0.449 -0.125 0.573 sum 3.916 2.140 -19.765 20.262 Atomic orbital electron populations 1.22106 0.97878 1.00643 0.99687 1.22158 0.94986 1.01007 1.00561 1.19385 0.96509 0.88752 0.83496 0.93869 1.21153 1.31308 1.11985 0.89978 0.91125 1.24859 0.95155 0.94947 0.98674 1.69884 1.38720 1.23897 1.20399 0.86585 0.79076 0.80739 0.81710 1.20680 1.21394 1.19534 1.60729 1.12596 1.49536 1.03003 1.21548 0.90034 0.89520 0.98615 1.24063 0.99447 0.96707 0.82603 1.70240 1.20722 1.01744 1.28201 1.22331 1.07064 1.00149 0.88992 1.22347 1.11475 0.86699 1.00273 1.45533 1.47638 1.10779 1.09410 1.22455 0.94635 0.86916 0.97005 1.21764 0.94930 1.01452 0.95488 0.89391 1.21406 1.00942 0.93867 0.82780 1.48344 1.23590 1.47194 1.15863 1.22133 0.88258 0.92648 0.99339 1.22603 0.99387 0.98409 0.96605 1.22340 1.00548 0.98795 0.97957 1.20962 0.83207 0.81933 0.83844 1.90751 1.23645 1.45548 1.80870 1.21039 1.01052 0.94089 0.90101 0.95642 0.90535 0.94995 0.96484 0.88812 0.92992 0.92708 0.85128 0.82185 0.82101 0.89885 0.88660 0.89147 0.89480 0.89920 0.90806 0.89862 0.89079 0.88086 0.87860 0.91095 0.95619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.43 37.16 0.31 -2.69 16 2 C -0.15 -3.22 5.07 -26.73 -0.14 -3.36 16 3 C 0.22 5.18 2.31 -68.86 -0.16 5.02 16 4 H 0.04 1.11 8.12 -51.93 -0.42 0.69 16 5 C -0.51 -13.02 5.98 -34.44 -0.21 -13.23 16 6 H 0.07 1.90 6.10 -52.49 -0.32 1.58 16 7 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.05 11.38 55.43 0.63 -23.42 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.53 -10.78 4.39 -231.24 -1.02 -11.80 16 14 C 0.13 2.65 3.74 -4.04 -0.02 2.64 16 15 C 0.24 4.69 7.31 -155.56 -1.14 3.55 16 16 N -0.49 -10.31 11.26 -10.44 -0.12 -10.43 16 17 C -0.04 -0.63 11.88 -17.57 -0.21 -0.84 16 18 C -0.07 -1.16 11.66 -16.80 -0.20 -1.36 16 19 N -0.45 -7.64 2.76 -112.50 -0.31 -7.95 16 20 C 0.11 1.63 5.71 -3.06 -0.02 1.62 16 21 C -0.12 -1.56 2.38 -91.26 -0.22 -1.78 16 22 H 0.09 1.34 8.09 -51.93 -0.42 0.92 16 23 C 0.13 1.41 5.33 -4.04 -0.02 1.39 16 24 N -0.62 -5.80 2.80 -172.42 -0.48 -6.28 16 25 C 0.10 0.63 7.35 -3.12 -0.02 0.61 16 26 C -0.13 -0.64 7.18 -25.10 -0.18 -0.82 16 27 C -0.16 -1.02 6.86 -26.74 -0.18 -1.20 16 28 C 0.51 5.45 6.62 -10.86 -0.07 5.38 16 29 O -0.53 -7.72 16.09 5.55 0.09 -7.63 16 30 C 0.07 1.09 3.09 -5.97 -0.02 1.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 1.72 5.80 -51.92 -0.30 1.42 16 33 H 0.03 0.59 5.23 -51.93 -0.27 0.32 16 34 H 0.02 0.33 6.36 -51.93 -0.33 0.00 16 35 H 0.09 2.32 6.25 -51.93 -0.32 2.00 16 36 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.06 1.06 4.93 -51.93 -0.26 0.80 16 38 H 0.13 2.97 4.65 -51.93 -0.24 2.73 16 39 H 0.16 2.28 8.06 -52.48 -0.42 1.85 16 40 H 0.16 1.95 8.06 -52.48 -0.42 1.52 16 41 H 0.08 1.26 7.88 -51.93 -0.41 0.85 16 42 H 0.10 1.34 4.64 -51.93 -0.24 1.10 16 43 H 0.09 0.82 7.97 -51.93 -0.41 0.40 16 44 H 0.09 0.98 7.92 -51.93 -0.41 0.57 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.07 1.13 7.52 -51.93 -0.39 0.74 16 52 H 0.03 0.42 6.50 -51.93 -0.34 0.08 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -31.37 385.12 -11.03 -42.40 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -8.03 Total: 5.66 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.57 Total: -2.38 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -1.30 Total: -59.88 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.37 -11.03 -42.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168928.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.732 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds