Wall clock time and date at job start Wed Apr 1 2020 03:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47607 * 2 1 4 4 H 1.08991 * 109.47704 * 173.76830 * 3 2 1 5 5 C 1.50704 * 109.46824 * 53.76759 * 3 2 1 6 6 H 1.07999 * 120.00287 * 240.00221 * 5 3 2 7 7 C 1.37885 * 119.99587 * 59.73263 * 5 3 2 8 8 N 1.31515 * 119.99929 * 0.26681 * 7 5 3 9 9 Si 1.86800 * 119.99805 * 180.27322 * 7 5 3 10 10 H 1.48508 * 109.46936 * 89.99672 * 9 7 5 11 11 H 1.48494 * 109.47067 * 209.99654 * 9 7 5 12 12 H 1.48494 * 109.47083 * 329.99932 * 9 7 5 13 13 N 1.46904 * 109.46983 * 293.77719 * 3 2 1 14 14 C 1.47426 * 111.00056 * 71.79857 * 13 3 2 15 15 C 1.52014 * 107.03893 * 154.26906 * 14 13 3 16 16 N 1.30078 * 127.02672 * 244.53810 * 15 14 13 17 17 C 1.34418 * 108.99229 * 179.81451 * 16 15 14 18 18 C 1.35000 * 108.05923 * 0.07706 * 17 16 15 19 19 N 1.34554 * 124.20610 * 64.53719 * 15 14 13 20 20 C 1.47614 * 124.50936 * 0.38597 * 19 15 14 21 21 C 1.53707 * 106.98095 * 295.24322 * 20 19 15 22 22 H 1.08999 * 109.20490 * 319.13467 * 21 20 19 23 23 C 1.52999 * 109.20290 * 199.78250 * 21 20 19 24 24 N 1.46497 * 109.47596 * 65.00150 * 23 21 20 25 25 C 1.46758 * 124.34959 * 89.99409 * 24 23 21 26 26 C 1.54482 * 105.47306 * 197.02093 * 25 24 23 27 27 C 1.54631 * 101.76375 * 334.58480 * 26 25 24 28 28 C 1.34421 * 124.34838 * 269.69878 * 24 23 21 29 29 O 1.21284 * 124.94238 * 359.57892 * 28 24 23 30 30 C 1.44777 * 110.99718 * 305.42430 * 13 3 2 31 31 H 1.08990 * 109.47344 * 198.82221 * 1 2 3 32 32 H 1.09007 * 109.47087 * 318.82446 * 1 2 3 33 33 H 1.09004 * 109.46788 * 78.81474 * 1 2 3 34 34 H 1.08998 * 109.47640 * 240.00139 * 2 1 3 35 35 H 1.09001 * 109.47113 * 119.99927 * 2 1 3 36 36 H 0.97003 * 119.99373 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.93974 * 273.64674 * 14 13 3 38 38 H 1.08996 * 109.94334 * 34.89110 * 14 13 3 39 39 H 1.08006 * 125.96733 * 180.12365 * 17 16 15 40 40 H 1.08006 * 126.79338 * 180.02562 * 18 17 16 41 41 H 1.08994 * 109.95150 * 54.61414 * 20 19 15 42 42 H 1.08999 * 109.94777 * 175.78789 * 20 19 15 43 43 H 1.09003 * 109.47081 * 185.00271 * 23 21 20 44 44 H 1.08998 * 109.47314 * 304.99684 * 23 21 20 45 45 H 1.08995 * 110.25049 * 316.02031 * 25 24 23 46 46 H 1.09004 * 110.24360 * 78.02589 * 25 24 23 47 47 H 1.08997 * 110.97403 * 92.70625 * 26 25 24 48 48 H 1.09006 * 110.97019 * 216.43104 * 26 25 24 49 49 H 1.09000 * 110.48476 * 143.47467 * 27 26 25 50 50 H 1.09004 * 110.48836 * 265.98516 * 27 26 25 51 51 H 1.09000 * 108.02624 * 320.85355 * 30 13 3 52 52 H 1.08999 * 108.02896 * 77.27219 * 30 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1243 1.4445 0.1115 5 6 1.4158 2.1960 1.1461 6 1 0.8100 3.0688 0.9524 7 6 1.6136 1.7678 2.4418 8 7 2.3513 0.7050 2.6777 9 14 0.8335 2.6974 3.8620 10 1 -0.5109 2.1330 4.1439 11 1 1.6886 2.5659 5.0688 12 1 0.7025 4.1321 3.5020 13 7 1.6769 2.0903 -1.2675 14 6 0.2286 2.3593 -1.3273 15 6 0.0324 3.5334 -2.2727 16 7 -0.4292 4.7120 -1.9728 17 6 -0.4460 5.4706 -3.0822 18 6 0.0234 4.7258 -4.1057 19 7 0.3210 3.5031 -3.5866 20 6 0.8601 2.3271 -4.2975 21 6 2.2560 2.0519 -3.7158 22 1 2.7733 2.9988 -3.5617 23 6 3.0533 1.1978 -4.7036 24 7 3.2857 1.9609 -5.9324 25 6 4.4509 2.8225 -6.1642 26 6 4.0627 3.7298 -7.3527 27 6 3.0039 2.8658 -8.0762 28 6 2.4619 1.9575 -6.9946 29 8 1.4324 1.3211 -7.0732 30 6 2.1534 1.3217 -2.3981 31 1 -0.3633 -0.9726 0.3315 32 1 -0.3634 0.7736 0.6766 33 1 -0.3633 0.1994 -1.0082 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.4907 0.4040 3.5893 37 1 -0.2967 1.4835 -1.7083 38 1 -0.1433 2.6149 -0.3352 39 1 -0.7765 6.4970 -3.1439 40 1 0.1393 5.0381 -5.1331 41 1 0.2128 1.4653 -4.1349 42 1 0.9353 2.5394 -5.3639 43 1 4.0103 0.9256 -4.2585 44 1 2.4915 0.2937 -4.9382 45 1 4.6556 3.4261 -5.2801 46 1 5.3217 2.2185 -6.4194 47 1 3.6290 4.6666 -7.0030 48 1 4.9214 3.9166 -7.9977 49 1 2.2116 3.4944 -8.4827 50 1 3.4676 2.2780 -8.8684 51 1 3.1412 0.9335 -2.1499 52 1 1.4848 0.4717 -2.5340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168928.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:51 Heat of formation + Delta-G solvation = 39.303400 kcal Electronic energy + Delta-G solvation = -32870.666724 eV Core-core repulsion = 28871.242930 eV Total energy + Delta-G solvation = -3999.423795 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.20182 -41.47936 -39.91086 -37.61706 -36.96360 -34.62569 -33.99716 -32.61140 -31.84444 -30.89551 -28.69881 -28.43795 -27.70922 -27.16548 -25.79897 -23.95368 -22.79123 -22.35924 -21.91821 -20.89498 -20.45487 -20.26765 -18.47024 -18.19619 -17.73867 -17.47727 -17.00144 -16.45998 -16.28351 -15.90103 -15.82321 -15.75296 -15.13769 -14.94954 -14.94234 -14.57731 -14.43287 -14.34632 -14.00664 -13.97229 -13.77678 -13.52074 -13.30194 -13.18741 -13.04870 -12.87069 -12.77510 -12.56454 -12.31019 -12.19536 -12.16067 -11.89038 -11.83761 -11.74684 -11.66305 -11.31231 -10.87252 -10.85843 -10.78689 -10.53834 -10.44195 -9.74775 -9.22909 -8.83468 -8.08249 -6.14475 1.19624 1.41450 1.44580 1.52122 1.54911 1.91104 1.99390 2.23705 2.45576 3.16527 3.22773 3.39798 3.53542 3.56007 3.68058 3.68642 3.88583 4.06476 4.11987 4.19250 4.24252 4.26507 4.30753 4.39739 4.40384 4.54271 4.57524 4.62518 4.67465 4.70989 4.74293 4.77122 4.80211 4.85636 4.91986 4.99242 5.10701 5.12807 5.14064 5.23962 5.40073 5.46513 5.51925 5.55292 5.73886 5.74630 5.82474 5.94141 6.13219 6.14471 6.28622 6.43293 6.78265 6.96211 7.12247 7.30733 7.52300 8.97356 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.003486 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.055722 B = 8031.306224 C = 8884.237568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.232 3.768 4 H 0.014 0.986 5 C -0.509 4.509 6 H 0.053 0.947 7 C 0.028 3.972 8 N -0.910 5.910 9 Si 0.939 3.061 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.544 5.544 14 C 0.144 3.856 15 C 0.208 3.792 16 N -0.532 5.532 17 C -0.058 4.058 18 C -0.055 4.055 19 N -0.449 5.449 20 C 0.116 3.884 21 C -0.098 4.098 22 H 0.075 0.925 23 C 0.138 3.862 24 N -0.616 5.616 25 C 0.093 3.907 26 C -0.121 4.121 27 C -0.150 4.150 28 C 0.500 3.500 29 O -0.578 6.578 30 C 0.066 3.934 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.260 0.740 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.186 0.814 40 H 0.203 0.797 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.119 0.881 49 H 0.107 0.893 50 H 0.121 0.879 51 H 0.075 0.925 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 3.145 -23.367 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.177 4.177 3 C 0.125 3.875 4 H 0.032 0.968 5 C -0.547 4.547 6 H 0.071 0.929 7 C -0.172 4.172 8 N -0.550 5.550 9 Si 0.766 3.234 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.203 1.203 13 N -0.267 5.267 14 C 0.016 3.984 15 C -0.055 4.055 16 N -0.251 5.251 17 C -0.206 4.206 18 C -0.188 4.188 19 N -0.130 5.130 20 C -0.006 4.006 21 C -0.119 4.119 22 H 0.094 0.906 23 C 0.015 3.985 24 N -0.349 5.349 25 C -0.029 4.029 26 C -0.159 4.159 27 C -0.189 4.189 28 C 0.291 3.709 29 O -0.459 6.459 30 C -0.063 4.063 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.203 0.797 40 H 0.219 0.781 41 H 0.095 0.905 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.101 0.899 48 H 0.137 0.863 49 H 0.125 0.875 50 H 0.139 0.861 51 H 0.093 0.907 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.197 3.238 -22.511 23.329 hybrid contribution -0.607 -0.590 0.689 1.092 sum 4.589 2.648 -21.822 22.456 Atomic orbital electron populations 1.21976 0.96861 1.00339 1.00217 1.21980 0.95759 0.99849 1.00124 1.19082 0.94435 0.89500 0.84441 0.96805 1.21280 1.30792 1.11498 0.91157 0.92873 1.25389 0.95712 0.95655 1.00406 1.69979 1.39638 1.24759 1.20604 0.85836 0.78590 0.79247 0.79684 1.20249 1.20928 1.20334 1.60605 1.12887 1.50151 1.03097 1.21208 0.89741 0.90186 0.97313 1.23766 1.01448 0.96496 0.83838 1.70158 1.21673 1.02787 1.30513 1.22844 1.07922 1.01361 0.88485 1.22981 1.08809 0.85468 1.01583 1.45669 1.46943 1.11822 1.08586 1.22555 0.94786 0.85967 0.97270 1.21593 0.94717 1.00992 0.94624 0.90650 1.21277 1.01250 0.93128 0.82880 1.48472 1.24344 1.47069 1.14982 1.22392 0.87693 0.92788 1.00037 1.22630 0.99781 0.97508 0.95960 1.22378 1.01127 0.98389 0.97056 1.21734 0.82578 0.81770 0.84860 1.90722 1.25698 1.47557 1.81876 1.21121 1.00983 0.94138 0.90054 0.94586 0.92935 0.93198 0.94307 0.91691 0.93063 0.92088 0.88310 0.79730 0.78062 0.90493 0.87547 0.87278 0.90012 0.90195 0.88873 0.89928 0.86301 0.87498 0.86142 0.90681 0.95380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 8.43 71.98 0.61 -5.06 16 2 C -0.14 -6.08 5.07 30.59 0.16 -5.92 16 3 C 0.23 11.04 2.31 44.17 0.10 11.14 16 4 H 0.01 0.75 8.12 -2.39 -0.02 0.73 16 5 C -0.51 -27.17 5.98 25.60 0.15 -27.01 16 6 H 0.05 3.00 6.10 -2.91 -0.02 2.98 16 7 C 0.03 1.51 5.30 84.66 0.45 1.96 16 8 N -0.91 -50.32 11.38 21.45 0.24 -50.08 16 9 Si 0.94 44.22 29.54 68.60 2.03 46.25 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 13 N -0.54 -22.31 4.39 -885.50 -3.89 -26.20 16 14 C 0.14 5.97 3.74 85.88 0.32 6.29 16 15 C 0.21 8.34 7.31 138.83 1.01 9.36 16 16 N -0.53 -22.53 11.26 -186.94 -2.11 -24.63 16 17 C -0.06 -1.95 11.88 83.55 0.99 -0.96 16 18 C -0.05 -1.58 11.66 83.28 0.97 -0.61 16 19 N -0.45 -14.64 2.76 -509.85 -1.41 -16.05 16 20 C 0.12 3.21 5.71 86.40 0.49 3.70 16 21 C -0.10 -2.54 2.38 -11.21 -0.03 -2.57 16 22 H 0.08 2.19 8.09 -2.39 -0.02 2.17 16 23 C 0.14 2.67 5.33 86.38 0.46 3.13 16 24 N -0.62 -10.06 2.80 -818.00 -2.29 -12.35 16 25 C 0.09 0.87 7.35 86.83 0.64 1.51 16 26 C -0.12 -0.69 7.18 31.65 0.23 -0.46 16 27 C -0.15 -1.44 6.86 30.59 0.21 -1.23 16 28 C 0.50 9.51 6.62 87.90 0.58 10.09 16 29 O -0.58 -16.04 16.09 -3.04 -0.05 -16.09 16 30 C 0.07 2.12 3.09 86.05 0.27 2.39 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 2.43 5.80 -2.38 -0.01 2.41 16 33 H 0.05 1.85 5.23 -2.38 -0.01 1.84 16 34 H 0.04 1.51 6.36 -2.39 -0.02 1.50 16 35 H 0.06 3.28 6.25 -2.39 -0.01 3.27 16 36 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 37 H 0.06 2.38 4.93 -2.39 -0.01 2.36 16 38 H 0.10 4.73 4.65 -2.39 -0.01 4.72 16 39 H 0.19 4.93 8.06 -2.91 -0.02 4.90 16 40 H 0.20 4.02 8.06 -2.91 -0.02 4.00 16 41 H 0.08 2.26 7.88 -2.39 -0.02 2.24 16 42 H 0.11 2.78 4.64 -2.39 -0.01 2.77 16 43 H 0.11 1.72 7.97 -2.39 -0.02 1.70 16 44 H 0.08 1.71 7.92 -2.39 -0.02 1.69 16 45 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 47 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.12 0.08 8.14 -2.38 -0.02 0.07 16 49 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 51 H 0.07 2.34 7.52 -2.39 -0.02 2.32 16 52 H 0.03 0.89 6.50 -2.39 -0.02 0.88 16 Total: -1.00 -70.98 385.12 1.08 -69.91 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.93 Total: 23.51 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 7.62 Total: 5.73 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -9.45 Total: -129.31 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.05 Total: -16.09 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -70.98 1.08 -69.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168928.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.210 kcal (2) G-P(sol) polarization free energy of solvation -70.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds